mRNA_17865 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|181215
Unique Name	mRNA_17865
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|181215 vs. uniprot
Match: A0A835Z2M5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2M5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.960e-10
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:    1 MLAPRLRERFHGSSSLTSLSLTACNNITSLPDSISG 108
            MLAPRLRERFHGSSSLTSLSLTACNNITSLPDSISG
Sbjct:    1 MLAPRLRERFHGSSSLTSLSLTACNNITSLPDSISG 36

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|181215 vs. uniprot

BLAST of jgi.p|Trimin1|181215 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z2M5_9STRA	6.960e-10	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_246	contig	Contig_246:37343..38602 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|181215\|e_gw1.246.21.1
Hectar predicted targeting category	other localisation
TranscriptId	181537
Track	FilteredModels1
ProteinId	181215

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|181215	gene_17865	Tribonema minus UTEX_B_3156	gene	Contig_246 37343..38602 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|181215	Trimin1\|181215\|e_gw1.246.21.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_246 37343..38602 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_17865_2	exon_17865_2	Tribonema minus UTEX_B_3156	exon	Contig_246 37343..37820 -
exon_17865_1	exon_17865_1	Tribonema minus UTEX_B_3156	exon	Contig_246 37962..38602 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_17865	CDS_17865	Tribonema minus UTEX_B_3156	CDS	Contig_246 37962..38602 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_246:37343..38602-
coding sequence from alignment at Contig_246:37343..38602-

spliced messenger RNA

>mRNA_17865 ID=mRNA_17865|Name=jgi.p|Trimin1|181215|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1119bp|location=Sequence derived from alignment at Contig_246:37343..38602- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCGCCCCGCCTCCGGGAGCGCTTCCATGGATCATCATCGTTGAC
ATCGCTCAGCCTCACGGCATGCAACAACATCACCAGCCTGCCGGACAGCA
TCAGCGGACTCACTGCGCTGACGTATCTGACGCTGGACAGGTGCACGCAG
CTCGCGGGCCTGCCCGACAGCATCGGCAACCTCACTCAGCTGATAATGCT
GTCGCTGCATGGTTGCTTGCGGCTGACGCGCCTGCCCAACAGCATTGGCG
AGCTCACAGCGCTGGCGACGTTGGACCTGAGCTACTGCGCGGCACTTGTT
GGCGTGCCTGACAGCATTGGCGATCTTGCGGCGCTGACGACGCTCGAGCT
GTGCTATTGCGACAGCCTTCAGCGTCTGCCGGACAGCATTGGCGATCTTG
CGGCGCTGGCGACGCTCGAGCTGTGCAGTTGCGACAGCCTGGAAGTGCTG
CCAACCAGCATTGGCAATCTAGCGGCGCTGGCGACGCTCGTGCTGCGTGA
TTGCAGCAGCCTTCATGTACTGCCGGACGCCATTGCTCAGCTGACTGCTC
TCACGGCGCTGGACCTGGGGGGGTGCAGATCTCTGCAACGCCTGCCAGCC
AGCATTTGGGCCTTGCAGCACTTGAAGGCTCTCAGCTTGAGCTTTTCGCG
TCTCACGCTGCTGCCGGAGGGCGTCTTCACACTGGCGTCGTTGACAGCGC
TCAACCTCTGCGGCTGCTCTCGGCTGACGTGCTTGTCAGAAGCGATCGGT
GAACTCACTGCGCTGACGGCACTTGACCTTCGCTACTGCCACGCGCTGAC
GGGCCTGCCTGACGCCATCGGCAATGTGCACGCGCTGACGACGCTGTCGC
TGTGGTGTTGTTCAGTGCTCAAAGCTCTGCCGGAGTCTTTTAGCAACTTG
CGCGCGCTGACAGACCTGGACCTGCATGGCTGCGGAGCGCTGGCGCGGCT
TCCAGACAGCATTGCTCAACTGACGGCGCTTCAGCGCATCAACCTCGGCA
GCTGCTCGTCGCTGCATAGCATCCCAGACGCGCTAGTGCGTGTGACGCAG
GAAGGCAGCATTTACGCTGTCGTCTCTGCACCCTGCGTGCTTACAAGCGC
GCCTGAGCGGGCATGCTGA

protein sequence of jgi.p|Trimin1|181215

>Trimin1|181215|e_gw1.246.21.1 ID=Trimin1|181215|e_gw1.246.21.1|Name=jgi.p|Trimin1|181215|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=373bp
MLAPRLRERFHGSSSLTSLSLTACNNITSLPDSISGLTALTYLTLDRCTQ
LAGLPDSIGNLTQLIMLSLHGCLRLTRLPNSIGELTALATLDLSYCAALV
GVPDSIGDLAALTTLELCYCDSLQRLPDSIGDLAALATLELCSCDSLEVL
PTSIGNLAALATLVLRDCSSLHVLPDAIAQLTALTALDLGGCRSLQRLPA
SIWALQHLKALSLSFSRLTLLPEGVFTLASLTALNLCGCSRLTCLSEAIG
ELTALTALDLRYCHALTGLPDAIGNVHALTTLSLWCCSVLKALPESFSNL
RALTDLDLHGCGALARLPDSIAQLTALQRINLGSCSSLHSIPDALVRVTQ
EGSIYAVVSAPCVLTSAPERAC*

mRNA from alignment at Contig_246:37343..38602-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_17865 ID=mRNA_17865|Name=jgi.p|Trimin1|181215|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1260bp|location=Sequence derived from alignment at Contig_246:37343..38602- (Tribonema minus UTEX_B_3156 )
ATGCTGGCGCCCCGCCTCCGGGAGCGCTTCCATGGATCATCATCGTTGAC
ATCGCTCAGCCTCACGGCATGCAACAACATCACCAGCCTGCCGGACAGCA
TCAGCGGACTCACTGCGCTGACGTATCTGACGCTGGACAGGTGCACGCAG
CTCGCGGGCCTGCCCGACAGCATCGGCAACCTCACTCAGCTGATAATGCT
GTCGCTGCATGGTTGCTTGCGGCTGACGCGCCTGCCCAACAGCATTGGCG
AGCTCACAGCGCTGGCGACGTTGGACCTGAGCTACTGCGCGGCACTTGTT
GGCGTGCCTGACAGCATTGGCGATCTTGCGGCGCTGACGACGCTCGAGCT
GTGCTATTGCGACAGCCTTCAGCGTCTGCCGGACAGCATTGGCGATCTTG
CGGCGCTGGCGACGCTCGAGCTGTGCAGTTGCGACAGCCTGGAAGTGCTG
CCAACCAGCATTGGCAATCTAGCGGCGCTGGCGACGCTCGTGCTGCGTGA
TTGCAGCAGCCTTCATGTACTGCCGGACGCCATTGCTCAGCTGACTGCTC
TCACGGCGCTGGACCTGGGGGGGTGCAGATCTCTGCAACGCCTGCCAGCC
AGCATTTGGGCCTTGCAGCACTTGAAGGCTCTCAGCTTGAGGTCCCTGGA
TGCTAGAGCGCTGCTGCCCCGCTTCCGCTGTCTCGCGACGCTGACGTCTC
TGGACATGAGTCATGGAAATGCTGCGCGCCTCCTGGTGGAGTGCATCGGC
GAGCTGACGGCGTTGCGGACACTGGACCTGAGCTTTTCGCGTCTCACGCT
GCTGCCGGAGGGCGTCTTCACACTGGCGTCGTTGACAGCGCTCAACCTCT
GCGGCTGCTCTCGGCTGACGTGCTTGTCAGAAGCGATCGGTGAACTCACT
GCGCTGACGGCACTTGACCTTCGCTACTGCCACGCGCTGACGGGCCTGCC
TGACGCCATCGGCAATGTGCACGCGCTGACGACGCTGTCGCTGTGGTGTT
GTTCAGTGCTCAAAGCTCTGCCGGAGTCTTTTAGCAACTTGCGCGCGCTG
ACAGACCTGGACCTGCATGGCTGCGGAGCGCTGGCGCGGCTTCCAGACAG
CATTGCTCAACTGACGGCGCTTCAGCGCATCAACCTCGGCAGCTGCTCGT
CGCTGCATAGCATCCCAGACGCGCTAGTGCGTGTGACGCAGGAAGGCAGC
ATTTACGCTGTCGTCTCTGCACCCTGCGTGCTTACAAGCGCGCCTGAGCG
GGCATGCTGA

Coding sequence (CDS) from alignment at Contig_246:37343..38602-

>mRNA_17865 ID=mRNA_17865|Name=jgi.p|Trimin1|181215|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1119bp|location=Sequence derived from alignment at Contig_246:37343..38602- (Tribonema minus UTEX_B_3156 )
ATGCTGGCGCCCCGCCTCCGGGAGCGCTTCCATGGATCATCATCGTTGAC
ATCGCTCAGCCTCACGGCATGCAACAACATCACCAGCCTGCCGGACAGCA
TCAGCGGACTCACTGCGCTGACGTATCTGACGCTGGACAGGTGCACGCAG
CTCGCGGGCCTGCCCGACAGCATCGGCAACCTCACTCAGCTGATAATGCT
GTCGCTGCATGGTTGCTTGCGGCTGACGCGCCTGCCCAACAGCATTGGCG
AGCTCACAGCGCTGGCGACGTTGGACCTGAGCTACTGCGCGGCACTTGTT
GGCGTGCCTGACAGCATTGGCGATCTTGCGGCGCTGACGACGCTCGAGCT
GTGCTATTGCGACAGCCTTCAGCGTCTGCCGGACAGCATTGGCGATCTTG
CGGCGCTGGCGACGCTCGAGCTGTGCAGTTGCGACAGCCTGGAAGTGCTG
CCAACCAGCATTGGCAATCTAGCGGCGCTGGCGACGCTCGTGCTGCGTGA
TTGCAGCAGCCTTCATGTACTGCCGGACGCCATTGCTCAGCTGACTGCTC
TCACGGCGCTGGACCTGGGGGGGTGCAGATCTCTGCAACGCCTGCCAGCC
AGCATTTGGGCCTTGCAGCACTTGAAGGCTCTCAGCTTGAGCTTTTCGCG
TCTCACGCTGCTGCCGGAGGGCGTCTTCACACTGGCGTCGTTGACAGCGC
TCAACCTCTGCGGCTGCTCTCGGCTGACGTGCTTGTCAGAAGCGATCGGT
GAACTCACTGCGCTGACGGCACTTGACCTTCGCTACTGCCACGCGCTGAC
GGGCCTGCCTGACGCCATCGGCAATGTGCACGCGCTGACGACGCTGTCGC
TGTGGTGTTGTTCAGTGCTCAAAGCTCTGCCGGAGTCTTTTAGCAACTTG
CGCGCGCTGACAGACCTGGACCTGCATGGCTGCGGAGCGCTGGCGCGGCT
TCCAGACAGCATTGCTCAACTGACGGCGCTTCAGCGCATCAACCTCGGCA
GCTGCTCGTCGCTGCATAGCATCCCAGACGCGCTAGTGCGTGTGACGCAG
GAAGGCAGCATTTACGCTGTCGTCTCTGCACCCTGCGTGCTTACAAGCGC
GCCTGAGCGGGCATGCTGA