mRNA_17817 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180348
Unique NamemRNA_17817
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180348 vs. uniprot
Match: A0A835Z1F0_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.990e-50
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFWCVTPFKVF 210
            AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFWCVTPFKVF
Sbjct:    1 AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFWCVTPFKVF 70
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BLAST of jgi.p|Trimin1|180348 vs. uniprot
Match: A0A835Z9R5_9STRA (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.660e-36
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            AGHAYTVLQAVETSHGHLL+QLRNPWG+GEW+GDWSD SGML D++CKEL HVID  DGTFW
Sbjct:    1 AGHAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 62
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BLAST of jgi.p|Trimin1|180348 vs. uniprot
Match: A0A835ZFZ2_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFZ2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.020e-30
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    4 GHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            GHAYTVLQAVETS+GHLL+QLRNPWG GE  GDWSDASGML D+ICKEL HVID EDGTFW
Sbjct:  183 GHAYTVLQAVETSYGHLLVQLRNPWGEGECTGDWSDASGMLTDEICKELKHVIDDEDGTFW 243
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BLAST of jgi.p|Trimin1|180348 vs. uniprot
Match: A0A835ZBB9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB9_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.670e-22
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   34 ETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            E+ H  L   LRNPWGRGEWRGDWSDASGML D+ICKEL HVID EDGTFW
Sbjct:  240 ESVHAFLSSALRNPWGRGEWRGDWSDASGMLTDEICKELKHVIDDEDGTFW 290
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BLAST of jgi.p|Trimin1|180348 vs. uniprot
Match: A0A835Z8S4_9STRA (Calpain catalytic domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S4_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.940e-22
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            AGHAYT+L+A ET HGH L+QLRNPWGR E+ G+WSD SGMLN  + +EL H I AEDGTFW
Sbjct:  302 AGHAYTILKAQETKHGHQLIQLRNPWGRHEFTGNWSDNSGMLNKGLLEELEHTI-AEDGTFW 362
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BLAST of jgi.p|Trimin1|180348 vs. uniprot
Match: A0A835YKV9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.160e-22
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    7 HAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            HAYT+L+A ET HGH L+QLRNPWG+ E+ GDWSD SGML+ ++ KEL HVI AEDGTFW
Sbjct:  306 HAYTILRAFETKHGHQLIQLRNPWGQREFTGDWSDTSGMLSKELLKELDHVI-AEDGTFW 364
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BLAST of jgi.p|Trimin1|180348 vs. uniprot
Match: R1C8G2_EMIHU (Calpain catalytic domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C8G2_EMIHU)

HSP 1 Score: 75.5 bits (184), Expect = 2.610e-14
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    4 GHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            GHAY+ L+  E   GH L+QLRNPWGR EWRGDWSDAS +    +   L    DA+DGTFW
Sbjct:  232 GHAYSCLRVAE-EEGHRLLQLRNPWGRTEWRGDWSDASHLWTPRLKARLGWS-DADDGTFW 290
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BLAST of jgi.p|Trimin1|180348 vs. uniprot
Match: A0A7S3T330_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T330_EMIHU)

HSP 1 Score: 75.1 bits (183), Expect = 3.750e-14
Identity = 35/61 (57.38%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    4 GHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            GHAY  L+  E   GH L+QLRNPWGR EWRGDWSDAS +    +   L    DA+DGTFW
Sbjct:  521 GHAYACLRVAE-EEGHRLLQLRNPWGRTEWRGDWSDASHLWTPRLKARLGWS-DADDGTFW 579
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BLAST of jgi.p|Trimin1|180348 vs. uniprot
Match: F2TVF2_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVF2_SALR5)

HSP 1 Score: 73.6 bits (179), Expect = 1.200e-13
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   19 VLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 186
            +L A +TS GH L+ LRNPWG  EW+GDWSD S +  DDI KE+    + +DG FW
Sbjct:    1 MLSAKQTSKGHRLVCLRNPWGEFEWKGDWSDNSSLWTDDIVKEVGATFNDKDGLFW 56
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BLAST of jgi.p|Trimin1|180348 vs. uniprot
Match: A0A7S1J9Z6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J9Z6_9EUGL)

HSP 1 Score: 72.8 bits (177), Expect = 2.420e-13
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    4 GHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFWCVTP 198
            GH Y VL A     G  L++LRNPWGRGEW G+WSD+S M  D    EL++    E G FW   P
Sbjct:  322 GHGYCVLDAQCLRSGERLLKLRNPWGRGEWMGEWSDSSPMWTDAARTELAYRPHTEPGVFWIAWP 386
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180348 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1F0_9STRA2.990e-50100.00Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835Z9R5_9STRA2.660e-3683.87Calpain catalytic domain-containing protein (Fragm... [more]
A0A835ZFZ2_9STRA1.020e-3085.25Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835ZBB9_9STRA3.670e-2278.43Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835Z8S4_9STRA3.940e-2269.35Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A835YKV9_9STRA5.160e-2270.00Calpain catalytic domain-containing protein n=1 Ta... [more]
R1C8G2_EMIHU2.610e-1457.38Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S3T330_EMIHU3.750e-1457.38Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
F2TVF2_SALR51.200e-1353.57Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7S1J9Z6_9EUGL2.420e-1349.23Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_214contigContig_214:57007..57219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180348|e_gw1.214.25.1
Descriptioncalcium-dependent cysteine-type endopeptidase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0045@1|root,KOG0045@2759|Eukaryota
Evalue9.59e-16
Seed ortholog5722.XP_001308640.1
Hectar predicted targeting categoryother localisation
TranscriptId180670
TrackFilteredModels1
ProteinId180348
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180348gene_17817Tribonema minus UTEX_B_3156 geneContig_214 57007..57219 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17817_1exon_17817_1Tribonema minus UTEX_B_3156 exonContig_214 57007..57219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17817CDS_17817Tribonema minus UTEX_B_3156 CDSContig_214 57007..57219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180348Trimin1|180348|e_gw1.214.25.1Tribonema minus UTEX_B_3156 polypeptideContig_214 57007..57219 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17817 ID=mRNA_17817|Name=jgi.p|Trimin1|180348|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_214:57007..57219- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGGTCACGCATACACCGTCCTGCAGGCTGTGGAAACATCCCACGGCCA
TCTGCTGATGCAGCTGAGGAACCCATGGGGGAGAGGGGAGTGGCGGGGCG
ACTGGAGCGATGCGTCTGGCATGCTCAATGACGACATCTGCAAGGAGCTG
AGCCACGTCATTGATGCTGAGGATGGGACCTTCTGGTGCGTCACCCCTTT
CAAAGTATTTTAA
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protein sequence of jgi.p|Trimin1|180348

>Trimin1|180348|e_gw1.214.25.1 ID=Trimin1|180348|e_gw1.214.25.1|Name=jgi.p|Trimin1|180348|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKEL
SHVIDAEDGTFWCVTPFKVF*
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mRNA from alignment at Contig_214:57007..57219-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17817 ID=mRNA_17817|Name=jgi.p|Trimin1|180348|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_214:57007..57219- (Tribonema minus UTEX_B_3156 )
GCAGGTCACGCATACACCGTCCTGCAGGCTGTGGAAACATCCCACGGCCA
TCTGCTGATGCAGCTGAGGAACCCATGGGGGAGAGGGGAGTGGCGGGGCG
ACTGGAGCGATGCGTCTGGCATGCTCAATGACGACATCTGCAAGGAGCTG
AGCCACGTCATTGATGCTGAGGATGGGACCTTCTGGTGCGTCACCCCTTT
CAAAGTATTTTAA
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Coding sequence (CDS) from alignment at Contig_214:57007..57219-

>mRNA_17817 ID=mRNA_17817|Name=jgi.p|Trimin1|180348|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_214:57007..57219- (Tribonema minus UTEX_B_3156 )
GCAGGTCACGCATACACCGTCCTGCAGGCTGTGGAAACATCCCACGGCCA
TCTGCTGATGCAGCTGAGGAACCCATGGGGGAGAGGGGAGTGGCGGGGCG
ACTGGAGCGATGCGTCTGGCATGCTCAATGACGACATCTGCAAGGAGCTG
AGCCACGTCATTGATGCTGAGGATGGGACCTTCTGGTGCGTCACCCCTTT
CAAAGTATTTTAA
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