mRNA_17777 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178946
Unique NamemRNA_17777
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178946 vs. uniprot
Match: A0A835Z9A7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9A7_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.720e-41
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MVSIVGGEGPPAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEMENASSALVPGS 207
            MVSIVGGEGPPAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEMENASSALVPGS
Sbjct:    1 MVSIVGGEGPPAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEMENASSALVPGS 69
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BLAST of jgi.p|Trimin1|178946 vs. uniprot
Match: A0A6H5KN32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN32_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.410e-9
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   31 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEMENASSALVPGS 207
            P  +ALHSGR+GGAT +   G S  +I +AGRWKS  F TY+R   +  N  S  +  S
Sbjct:   59 PTHFALHSGRIGGATQLAKQGASVVQIQRAGRWKSGAFMTYVRAGGDGANCVSRALASS 117
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BLAST of jgi.p|Trimin1|178946 vs. uniprot
Match: A0A6H5K8A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A0_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.630e-8
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 MVSIVGGEGPPAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPE 171
            +VS  G +  P +YALHSGR+GGAT +   G S  +I +AGRWKS+ F  Y+R   E
Sbjct:  138 LVSAAGRD--PQKYALHSGRIGGATHLASMGASVIQIQRAGRWKSSAFMVYVRAGGE 192
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BLAST of jgi.p|Trimin1|178946 vs. uniprot
Match: A0A6H5KZQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 9.890e-7
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:   31 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEMEN 180
            P  +ALHSGR+GGAT +   G S  +I + GRWKS    TY+R   E  N
Sbjct:  282 PTHFALHSGRIGGATQLAKQGASGVQIQRVGRWKSGAIMTYVRAGGEGAN 331
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BLAST of jgi.p|Trimin1|178946 vs. uniprot
Match: A0A662XNI5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNI5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.700e-6
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   31 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 207
            P +++ HS R+GGA A+M AG+SD  I   GRW S  F  Y RL P M  +A+S+++  S
Sbjct:  209 PNDFSCHSLRIGGACALMAAGKSDLVIRLMGRWSSWCFSVYTRLKPGMVRDAASSMIKAS 268
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BLAST of jgi.p|Trimin1|178946 vs. uniprot
Match: A0A6G0NHZ3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NHZ3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.860e-6
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   28 PPAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 207
            P ++Y+ HS R+GGA A++ AG+SD  I   GRW S  F  Y RL P M  +A+S ++  S
Sbjct:  237 PRSDYSTHSLRIGGACALLAAGKSDLAIRLLGRWASWCFTVYTRLRPGMIRDAASCMIKAS 297
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BLAST of jgi.p|Trimin1|178946 vs. uniprot
Match: W2PKW8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PKW8_PHYPN)

HSP 1 Score: 51.2 bits (121), Expect = 2.380e-6
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   31 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 207
            P +Y+ HS R+GGA A++ AG+SD  I   GRW S  F  Y RL P M  + +S+++  S
Sbjct:   56 PKDYSSHSLRIGGACALLAAGKSDLVIRLMGRWSSWCFIVYTRLKPGMIRDVASSMIKAS 115
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BLAST of jgi.p|Trimin1|178946 vs. uniprot
Match: A0A6A4FZM8_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FZM8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.640e-6
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   28 PPAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 207
            P ++Y+ HS R+GGA A++ AG+SD  I   GRW S  F  Y RL P M  +A+S ++  S
Sbjct:  420 PRSDYSTHSLRIGGACALLAAGKSDLVIRLLGRWASWCFTVYTRLRPGMIRDAASCMIKAS 480
[Close]
BLAST of jgi.p|Trimin1|178946 vs. uniprot
Match: W2PLJ7_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PLJ7_PHYPN)

HSP 1 Score: 52.8 bits (125), Expect = 2.670e-6
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   31 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 207
            P +Y+ HS R+GGA A++ AG+SD  I   GRW S  F  Y RL P M  + +S+++  S
Sbjct:  697 PKDYSSHSLRIGGACALLAAGKSDLVIRLMGRWSSRCFTVYTRLKPGMIRDVASSMIKAS 756
[Close]
BLAST of jgi.p|Trimin1|178946 vs. uniprot
Match: W2QZY1_PHYPN (Uncharacterized protein n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QZY1_PHYPN)

HSP 1 Score: 52.8 bits (125), Expect = 2.700e-6
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   31 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 207
            P +Y+ HS R+GGA A++ AG+SD  I   GRW S  F  Y RL P +  +A+S+++  S
Sbjct: 1101 PKDYSAHSLRIGGACALLAAGKSDLVIRLMGRWSSWCFTVYTRLKPAIIRDAASSMIKAS 1160
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178946 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A835Z9A7_9STRA5.720e-41100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A6H5KN32_9PHAE6.410e-945.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8A0_9PHAE7.630e-849.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZQ1_9PHAE9.890e-748.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A662XNI5_9STRA1.700e-645.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6G0NHZ3_9STRA1.860e-644.26Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
W2PKW8_PHYPN2.380e-643.33Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A6A4FZM8_9STRA2.640e-644.26Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
W2PLJ7_PHYPN2.670e-643.33Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W2QZY1_PHYPN2.700e-643.33Uncharacterized protein n=5 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_180contigContig_180:59900..60109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178946|e_gw1.180.22.1
Max annot lvl2759|Eukaryota
EggNOG OGs2EE2Q@1|root,2SJJA@2759|Eukaryota
Evalue1.52e-06
Seed ortholog4792.ETI35125
Hectar predicted targeting categoryother localisation
TranscriptId179268
TrackFilteredModels1
ProteinId178946
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178946gene_17777Tribonema minus UTEX_B_3156 geneContig_180 59900..60109 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17777_1exon_17777_1Tribonema minus UTEX_B_3156 exonContig_180 59900..60109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17777CDS_17777Tribonema minus UTEX_B_3156 CDSContig_180 59900..60109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178946Trimin1|178946|e_gw1.180.22.1Tribonema minus UTEX_B_3156 polypeptideContig_180 59900..60109 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17777 ID=mRNA_17777|Name=jgi.p|Trimin1|178946|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_180:59900..60109+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCAATTGTGGGGGGTGAAGGCCCACCTGCAGAGTATGCTCTCCA
TTCAGGGCGAGTGGGGGGGGCCACCGCGATGATGATAGCAGGCAGGTCTG
ATACTGAAATCATGAAAGCGGGGAGGTGGAAGTCGGCAGTGTTCAGAACC
TACATCAGGCTTTCGCCGGAGATGGAGAATGCCTCCTCCGCACTCGTGCC
GGGTAGTTGA
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protein sequence of jgi.p|Trimin1|178946

>Trimin1|178946|e_gw1.180.22.1 ID=Trimin1|178946|e_gw1.180.22.1|Name=jgi.p|Trimin1|178946|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=70bp
MVSIVGGEGPPAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRT
YIRLSPEMENASSALVPGS*
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mRNA from alignment at Contig_180:59900..60109+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17777 ID=mRNA_17777|Name=jgi.p|Trimin1|178946|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_180:59900..60109+ (Tribonema minus UTEX_B_3156 )
ATGGTGTCAATTGTGGGGGGTGAAGGCCCACCTGCAGAGTATGCTCTCCA
TTCAGGGCGAGTGGGGGGGGCCACCGCGATGATGATAGCAGGCAGGTCTG
ATACTGAAATCATGAAAGCGGGGAGGTGGAAGTCGGCAGTGTTCAGAACC
TACATCAGGCTTTCGCCGGAGATGGAGAATGCCTCCTCCGCACTCGTGCC
GGGTAGTTGA
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Coding sequence (CDS) from alignment at Contig_180:59900..60109+

>mRNA_17777 ID=mRNA_17777|Name=jgi.p|Trimin1|178946|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=210bp|location=Sequence derived from alignment at Contig_180:59900..60109+ (Tribonema minus UTEX_B_3156 )
ATGGTGTCAATTGTGGGGGGTGAAGGCCCACCTGCAGAGTATGCTCTCCA
TTCAGGGCGAGTGGGGGGGGCCACCGCGATGATGATAGCAGGCAGGTCTG
ATACTGAAATCATGAAAGCGGGGAGGTGGAAGTCGGCAGTGTTCAGAACC
TACATCAGGCTTTCGCCGGAGATGGAGAATGCCTCCTCCGCACTCGTGCC
GGGTAGTTGA
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