mRNA_17730 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152006
Unique NamemRNA_17730
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|152006 vs. uniprot
Match: A0A835Z1X1_9STRA (Aspartate/ornithine carbamoyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1X1_9STRA)

HSP 1 Score: 410 bits (1055), Expect = 7.570e-145
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1 
Query:    1 RGVPALSGRSLMSIKDLSKQELLDVLACSIALKTAFKGGASGIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDLGK 633
            RGVPALSGRSLMSIKDLSKQELLDVLACSIALKTAFKGGASGIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDLGK
Sbjct:    1 RGVPALSGRSLMSIKDLSKQELLDVLACSIALKTAFKGGASGIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDLGK 211
[Close]
BLAST of jgi.p|Trimin1|152006 vs. uniprot
Match: D8LLH5_ECTSI (Ornithine transcarbamoylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH5_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 5.690e-95
Identity = 148/211 (70.14%), Postives = 174/211 (82.46%), Query Frame = 1 
Query:    1 RGVPALSGRSLMSIKDLSKQELLDVLACSIALKTAFKGGASGIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDLGK 633
            +GV +L+GRSLMSI DLSK EL+++L CSIALK AFK  +SGIE+E  L+GKSVAMIFQKRSTRTRVSTETGMG+LGG+ALFLGP+DIQLGVNES+KDTA+VL  FNS++LARV  H DV  L+A A VPVINALS+LHHPLQTLAD+MT+QE+FG +L G T  WVGDGNNVLHDL+LGAAKL +N+RIA P  Y PD  +      L K
Sbjct:    5 QGVKSLAGRSLMSIADLSKAELIELLDCSIALKKAFKDSSSGIEKEQKLIGKSVAMIFQKRSTRTRVSTETGMGLLGGRALFLGPTDIQLGVNESMKDTAKVLSGFNSLLLARVNDHADVEELKAEARVPVINALSDLHHPLQTLADLMTIQERFG-KLEGLTFTWVGDGNNVLHDLMLGAAKLAINLRIATPEGYRPDPAVTAMTEALAK 214
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BLAST of jgi.p|Trimin1|152006 vs. uniprot
Match: A0A7S2V0S5_9STRA (Ornithine carbamoyltransferase n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0S5_9STRA)

HSP 1 Score: 277 bits (709), Expect = 6.230e-90
Identity = 142/208 (68.27%), Postives = 169/208 (81.25%), Query Frame = 1 
Query:    4 GVPALSGRSLMSIKDLSKQELLDVLACSIALKTAFKGGASGIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDL 627
            GV +L+G+SL+SI DLS +EL  +L  S +LK+++K   + + R  PL G SVAMIFQKRSTRTRVSTETGM +LGG ALFLGPSDIQLGVNE +KDTA VL RFNS+VLARVFAH DV  L   A VPVINALS+LHHPLQ LAD++TLQE FG +L+G+TVAWVGDGNNVLHDL+LGAAKLG+NV IACP  Y PDAG+++   +L
Sbjct:   56 GVESLAGKSLLSIADLSTEELQGLLDLSASLKSSYK--QNSVAR--PLSGSSVAMIFQKRSTRTRVSTETGMSLLGGHALFLGPSDIQLGVNECMKDTALVLSRFNSLVLARVFAHADVTELAQHATVPVINALSDLHHPLQALADLLTLQEHFGKDLSGKTVAWVGDGNNVLHDLMLGAAKLGMNVNIACPTGYEPDAGVLEATKEL 259
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BLAST of jgi.p|Trimin1|152006 vs. uniprot
Match: A0A7S3LD54_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD54_9STRA)

HSP 1 Score: 253 bits (647), Expect = 8.300e-81
Identity = 131/207 (63.29%), Postives = 154/207 (74.40%), Query Frame = 1 
Query:    7 VPALSGRSLMSIKDLSKQELLDVLACSIALKTAFKGGASGIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDL 627
            V +L G   MSI  LSK EL  +L  S   K  +   ++      PL G S++MIFQKRSTRTRVS+ETGM +LGG ALFLGPSDIQLGVNE+++DTA VLGRFN +VLARVF H DVV L   + VPVINALS+LHHPLQTLAD+M LQE FG +L+G+TVAW GDGNNVLHDL+LG+A LG+NV IA P  Y P+A IMQ A D 
Sbjct:   32 VASLKGVDFMSIDQLSKSELQGLLDLSHHYKKIYSDKSNSKTLPRPLTGMSMSMIFQKRSTRTRVSSETGMALLGGHALFLGPSDIQLGVNETMRDTASVLGRFNDVVLARVFGHNDVVELAKYSDVPVINALSDLHHPLQTLADLMVLQEHFGKDLSGKTVAWCGDGNNVLHDLMLGSAILGMNVNIATPKGYEPNAAIMQKAKDF 238
[Close]
BLAST of jgi.p|Trimin1|152006 vs. uniprot
Match: A0A7S1D911_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D911_CYCTE)

HSP 1 Score: 250 bits (638), Expect = 1.320e-79
Identity = 130/206 (63.11%), Postives = 156/206 (75.73%), Query Frame = 1 
Query:   16 LSGRSLMSIKDLSKQELLDVLACSIALKTAFKGGA--SGIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDL 627
            L GR+L+SI +LS  EL  +L  S   K  +   A  S  E   PL G+S++MIFQKRSTRTRVSTETGM +LGG ALFLGPSDIQLGVNES+KDTA VL RFNS++LARVF+H D++ L   A VPVINALS+LHHPLQTLAD+M LQ+ FG  L G+T+AWVGDGNNVLHDL+LGAAK+G+NVR+A P  Y P+  I+     L
Sbjct:   20 LQGRNLLSIDELSNDELSGLLQLSQHYKEIYGKNATVSPCEAPKPLTGQSLSMIFQKRSTRTRVSTETGMFLLGGHALFLGPSDIQLGVNESMKDTALVLSRFNSLILARVFSHNDILELAEHAQVPVINALSDLHHPLQTLADLMALQDHFGNNLQGKTLAWVGDGNNVLHDLMLGAAKMGMNVRVATPTGYEPNETILAKTRQL 225
[Close]
BLAST of jgi.p|Trimin1|152006 vs. uniprot
Match: A0A7S2SEV3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SEV3_9STRA)

HSP 1 Score: 248 bits (634), Expect = 7.890e-79
Identity = 129/214 (60.28%), Postives = 161/214 (75.23%), Query Frame = 1 
Query:    1 RGVPALSGRSLMSIKDLSKQELLDVLACSIALKTAF--KGGASGIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAE-LAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDLGK 633
            + +  L+GR  +SI +LS +EL  +L  S   K  +  K   + +E   PL G+SV+MIFQKRSTRTRVSTETGMG+LGGQ+LFLGPSDIQLGVNES+KDTA VL  FNS++LARV  H ++  L   A VP+INALS+LHHPLQTLAD+M L++ FG + + G+TVAWVGDGNNVLHDL+LG+AKLG+NVRIA P  Y  DAGI++    L K
Sbjct:   28 QSLKGLAGRHFLSIDELSNEELRGLLDLSKHYKATYGKKSTVAPLEAPKPLTGQSVSMIFQKRSTRTRVSTETGMGLLGGQSLFLGPSDIQLGVNESMKDTALVLSGFNSLILARVNTHSEISELAKHATVPIINALSDLHHPLQTLADLMALEDHFGTDKIRGKTVAWVGDGNNVLHDLMLGSAKLGMNVRIATPKGYECDAGILEKTRQLAK 241
[Close]
BLAST of jgi.p|Trimin1|152006 vs. uniprot
Match: K0TH75_THAOC (Uncharacterized protein n=3 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TH75_THAOC)

HSP 1 Score: 246 bits (629), Expect = 4.630e-78
Identity = 127/204 (62.25%), Postives = 157/204 (76.96%), Query Frame = 1 
Query:   22 GRSLMSIKDLSKQELLDVLACSIALKTAFKGGAS--GIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDL 627
            G+  +SI  LS  EL  +L  S   +  +  G+S   +E   PL G+SV+MIFQKRSTRTRVSTETGM +LGGQ+LFLGPSDIQLGVNES++DTA VL RFNS+VLARVFAH D++ L   A VPVINALS+LHHPLQTLAD+M L++ FG  L G+T+AWVGDGNNVLHDL+LG AKLG+N+RIA P  Y  ++G+++T   L
Sbjct:   38 GKHFISIDQLSNDELRGLLDLSKKYRDTYGKGSSVNPVEAPKPLTGQSVSMIFQKRSTRTRVSTETGMNLLGGQSLFLGPSDIQLGVNESMRDTALVLSRFNSLVLARVFAHDDILELSKYATVPVINALSDLHHPLQTLADLMALEDHFG-NLKGKTLAWVGDGNNVLHDLMLGGAKLGMNIRIATPAGYDANSGVLETTKQL 240
[Close]
BLAST of jgi.p|Trimin1|152006 vs. uniprot
Match: A0A7S4AXV9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXV9_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.130e-77
Identity = 125/209 (59.81%), Postives = 154/209 (73.68%), Query Frame = 1 
Query:    7 VPALSGRSLMSIKDLSKQELLDVLACSIALKTAFKGGASGIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDLGK 633
            V  L G   +SI  LS  EL  +L  S   K  +   +  + +  PL G S++MIFQKRSTRTRVSTETGM MLGG ALFLGPSDIQLGVNES++DTA VL RFN ++LARV+AH D+  L   + VP+INALS+LHHPLQTLAD+M LQ+ FG +L+G+TVAWVGDGNNVLHDL+LG+ K+G+NV+IA P  Y PDA IM  +  L +
Sbjct:   31 VSTLKGEHFVSIDQLSNDELKGLLDVSHHYKEIYSDKSKSLPK--PLDGHSLSMIFQKRSTRTRVSTETGMSMLGGHALFLGPSDIQLGVNESMRDTASVLSRFNDLILARVYAHNDITDLAKYSDVPIINALSDLHHPLQTLADLMALQQHFGKDLSGKTVAWVGDGNNVLHDLMLGSLKMGMNVQIATPAGYEPDADIMAKSEVLAE 237
[Close]
BLAST of jgi.p|Trimin1|152006 vs. uniprot
Match: A0A7S2MG95_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MG95_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.140e-77
Identity = 126/206 (61.17%), Postives = 154/206 (74.76%), Query Frame = 1 
Query:   16 LSGRSLMSIKDLSKQELLDVLACSIALKTAFKGGAS--GIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDL 627
            ++GR+ MSI +LS +EL  +L  S   K  +   A+        PL GKSV+MIFQKRSTRTRVSTETGM +LGG ALFLGPSDIQLGVNES++DTA VL RFNSI+LARV+ H D+V L   A VPVINALS+LHHPLQTLAD+M L++ FG +L G+T+AWVGDGNNVLHDL++GAAKLG+NV +A P  Y  +  I+     L
Sbjct:   43 MAGRNFMSIDELSNKELRGLLDLSKQYKATYGKNATIPPTSAPKPLTGKSVSMIFQKRSTRTRVSTETGMSLLGGHALFLGPSDIQLGVNESMRDTANVLSRFNSIILARVYGHDDIVELGKHATVPVINALSDLHHPLQTLADLMALEDHFGGDLRGKTLAWVGDGNNVLHDLMMGAAKLGMNVNVATPAGYEANERIVNITKQL 248
[Close]
BLAST of jgi.p|Trimin1|152006 vs. uniprot
Match: B8BT16_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT16_THAPS)

HSP 1 Score: 244 bits (624), Expect = 2.800e-77
Identity = 127/206 (61.65%), Postives = 154/206 (74.76%), Query Frame = 1 
Query:   16 LSGRSLMSIKDLSKQELLDVLACSIALKTAF--KGGASGIERELPLLGKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTARVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMTLQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDAGIMQTASDL 627
            L G+  +SI  LS +EL  +L  S   +  +     A       PL G+SV+MIFQKRSTRTRVSTETGM +LGGQ+LFLGPSDIQLGVNES++DTA VL RFNS++LARVF+H DV+ L   A VPVINALS+LHHPLQTLAD+M L++ FG +L G+T+AWVGDGNNVLHDL LG AKLG+N+RIA P  Y  DAG++ T   L
Sbjct:   38 LEGKHFISIDKLSNEELRGLLDLSKKYRDTYGKNSAADPATAPKPLTGQSVSMIFQKRSTRTRVSTETGMNLLGGQSLFLGPSDIQLGVNESMRDTALVLSRFNSLILARVFSHNDVLELSEHATVPVINALSDLHHPLQTLADLMALEDHFG-DLKGKTLAWVGDGNNVLHDLALGGAKLGMNIRIATPVGYEADAGVLDTTRKL 242
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152006 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1X1_9STRA7.570e-145100.00Aspartate/ornithine carbamoyltransferase (Fragment... [more]
D8LLH5_ECTSI5.690e-9570.14Ornithine transcarbamoylase n=1 Tax=Ectocarpus sil... [more]
A0A7S2V0S5_9STRA6.230e-9068.27Ornithine carbamoyltransferase n=2 Tax=Fibrocapsa ... [more]
A0A7S3LD54_9STRA8.300e-8163.29Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1D911_CYCTE1.320e-7963.11Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2SEV3_9STRA7.890e-7960.28Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
K0TH75_THAOC4.630e-7862.25Uncharacterized protein n=3 Tax=Thalassiosira ocea... [more]
A0A7S4AXV9_9STRA1.130e-7759.81Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2MG95_9STRA1.140e-7761.17Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B8BT16_THAPS2.800e-7761.65Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_236contigContig_236:394..4705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152006|gw1.236.39.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00096
KEGG ReactionR01398
KEGG ModuleM00029,M00844
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230
KEGG koko:K00611
EC2.1.3.3
GOsGO:0000050,GO:0000052,GO:0001101,GO:0001889,GO:0003674,GO:0003824,GO:0004585,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006593,GO:0006807,GO:0007275,GO:0007494,GO:0007584,GO:0008150,GO:0008152,GO:0008289,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009084,GO:0009605,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010243,GO:0014070,GO:0016020,GO:0016043,GO:0016053,GO:0016054,GO:0016597,GO:0016740,GO:0016741,GO:0016743,GO:0019240,GO:0019627,GO:0019752,GO:0019866,GO:0022607,GO:0031090,GO:0031406,GO:0031667,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032868,GO:0033273,GO:0034641,GO:0035295,GO:0036094,GO:0042221,GO:0042301,GO:0042450,GO:0042493,GO:0042592,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0048513,GO:0048565,GO:0048731,GO:0048732,GO:0048856,GO:0048878,GO:0050801,GO:0050896,GO:0051259,GO:0051260,GO:0055081,GO:0055123,GO:0061008,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070206,GO:0070207,GO:0070781,GO:0071704,GO:0071840,GO:0071941,GO:0097272,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901652,GO:1901698,GO:1901700
Preferred nameOTC
Descriptionornithine carbamoyltransferase activity
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0448@1|root,KOG1504@2759|Eukaryota
Evalue9.33e-96
Seed ortholog2880.D8LLH5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionornithine transcarbamoylase
Ec32 orthologEc-00_004630.1
TranscriptId152328
TrackFilteredModels1
ProteinId152006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152006gene_17730Tribonema minus UTEX_B_3156 geneContig_236 394..4705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152006Trimin1|152006|gw1.236.39.1Tribonema minus UTEX_B_3156 polypeptideContig_236 394..4705 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17730_3exon_17730_3Tribonema minus UTEX_B_3156 exonContig_236 394..648 -
exon_17730_2exon_17730_2Tribonema minus UTEX_B_3156 exonContig_236 1679..2003 -
exon_17730_1exon_17730_1Tribonema minus UTEX_B_3156 exonContig_236 4653..4705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17730CDS_17730Tribonema minus UTEX_B_3156 CDSContig_236 4653..4705 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17730 ID=mRNA_17730|Name=jgi.p|Trimin1|152006|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=633bp|location=Sequence derived from alignment at Contig_236:394..4705- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGGGAGTGCCGGCCCTGAGCGGACGCTCATTGATGAGCATAAAGGACCT
CAGCAAGCAGGAGCTGCTGGACGTCCTCGCCTGCTCCATCGCGCTCAAGA
CCGCCTTCAAGGGCGGCGCCTCCGGCATTGAGCGCGAGCTCCCGCTGCTC
GGCAAATCCGTCGCCATGATCTTCCAGAAACGCTCCACGCGCACGCGCGT
CAGCACGGAGACGGGAATGGGCATGCTCGGCGGCCAGGCGCTGTTCCTGG
GTCCCTCGGACATTCAGTTGGGCGTGAACGAGAGTTTGAAGGACACGGCG
CGCGTGCTGGGGCGCTTCAACAGCATCGTGCTCGCGCGCGTGTTCGCGCA
CCGCGACGTCGTCACGCTTCAGGCAAGTGCCGGCGTCCCCGTCATCAACG
CGCTCAGCAACCTGCACCACCCGCTGCAGACCCTCGCCGACATCATGACC
TTGCAGGAGCAGTTCGGCGCGGAGCTCGCGGGGCGCACCGTCGCGTGGGT
GGGCGACGGCAACAACGTGCTGCACGACCTGCTGCTCGGCGCGGCGAAGC
TGGGGGTCAACGTGCGCATTGCGTGCCCGCCGGACTACCTGCCGGACGCG
GGCATCATGCAGACGGCCAGCGACCTCGGCAAG
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protein sequence of jgi.p|Trimin1|152006

>Trimin1|152006|gw1.236.39.1 ID=Trimin1|152006|gw1.236.39.1|Name=jgi.p|Trimin1|152006|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=211bp
RGVPALSGRSLMSIKDLSKQELLDVLACSIALKTAFKGGASGIERELPLL
GKSVAMIFQKRSTRTRVSTETGMGMLGGQALFLGPSDIQLGVNESLKDTA
RVLGRFNSIVLARVFAHRDVVTLQASAGVPVINALSNLHHPLQTLADIMT
LQEQFGAELAGRTVAWVGDGNNVLHDLLLGAAKLGVNVRIACPPDYLPDA
GIMQTASDLGK
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mRNA from alignment at Contig_236:394..4705-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17730 ID=mRNA_17730|Name=jgi.p|Trimin1|152006|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4312bp|location=Sequence derived from alignment at Contig_236:394..4705- (Tribonema minus UTEX_B_3156 )
AGGGGAGTGCCGGCCCTGAGCGGACGCTCATTGATGAGCATAAAGGACCT
CAGGTATGATCAATCTCGATGCTTTTGAGCCGTGCACAGTTGTTGAAGCA
AGTCGCCAGCGCTTGCGGTGCGTGCCACCAGCAGACGAAACACATTTGCT
TTTTCGCTAGCCGCTGTCAGCCTTGTGGTGCAGGGCAGCCCGGTTTGCAC
TTGTATGTGTGAGAGGCAAAATTAGCTCGGTAATCTCAGATCATCTTGAA
GCTGCTGCGCGTGCAGCTGCAGCTGAGAGCCGCGTTGCTTGCATCGCGCT
GACTGGCTGCGTGAGTGCAGACATTTGCGGTCGGTACAACATAATGTAAG
GCGTCGGCACAGGCGACAACTCAGCTGACGGCGGCATTAGCAACCGTGTG
CCGCTGCTGATATATAGACTGCTTGCAGCTGAAGTGGACTGCTACGCAGT
ATCTATATGATTGACCGAATCTCTTACATGCTTAAATCTAGTTGTCAAAC
ACGCATAACTGACCTTCCTCAGTTCACCACCGCCCGAGTGCTCGGACGTT
CAACAAAACGTTGACAGCGCGGTGCTCGCCAATTCACACTCGAAGTGCAT
ATTAACGCCTTTCCCACAACCCAGCACAATATGTGTGGGCACCACATGTC
CCCAAGGCCCAATGTCAGCTGCTCGTAAAGTTTGCAATTGACTGACGGAA
TCACACTTTCGAGCTATGAAGTTCGCGGTGCAGCATAATCTGCGCCCCTT
TCACGCCAGAAAAAGAGATGACTGCCTGATGCAGTGAGTGCGCTGACGCC
ATCCATTAGACAAGAGCATTTGCGTTTGTGGTAATGGGCAGCCTCTGTCA
GCACCACATGTGTTTGCGACTCCAGACCCTCTAGCGCGTTGTGCATGGCT
GGCAGCACTCTACAAGCTTTGGGTGTGGTACTCTGGGTTGTATCGAGTGG
TGCGTTTCACGCTTTTTGGCATTTGCGCGGTGGACGTACAAGCATTGGCA
GTCATTGCTCAAGCAACGAATACGAGAATTAATAAAAAACGCTGGGTGCT
CGTACCTTGGCCAGTGGGCTTGAAGTGCACAACACCAGAATCAGCTCTAT
CACTACATTCTCGATGGCAGCAAGCGTAAGGTTGTGTCGCCTGTGCTGTT
CTCGATAGGTATTTGTACGCCATCATAATAATAGGCAGATGTAAAAGTTG
AGAGGCTGCTCATGTGCACTCGCATAAGCGTATTATGCACCACATGCAAC
ACAATTCTCGATTTCACAATTCAAGATGCGTCCATGTGTGTAAGTGTATT
CTATTGGCAGGTGTTCAAACCAGCACTCGCAGAACAGGACCTACTTTAGT
GCAAGTTACATTCTGGTTCAAGCCAGCACTCCCAAAACACCTGTTACACA
TGGTTCATGTTAAGAGTTTCACTCCTCAATCGTTGTGAATGAAGTGCAAG
TTGTGGTCTGCTCAGCACAACTTTTTCTTTGCCAGCGTTCCATCCATATA
TGCGCACTGATGCATCAACACAAGCAGGGAGCATCTTGGCTCATCGGTGC
TGTCAAACACTTGATTGTTTGTTTCTGTGCTTCACTAAACTATAGCACGT
GCGCAGTATTGCTTTCCATGCGCACTGAGCGCTGCCGTGGCTAACATGCA
CCGATTTCTGCGTCATTCGTCCATGTGCATCCAATCTGTGTCAATTCATG
TGAATGAATTTGCAAATTTGTCAATTCATGTGAATGAATTTGCACGAAGG
CAACTCTCCGCCACCGCAGCAAAGTGGGTGGCGAACATGTATTCCACATC
GTTGATATCCCTCTAGTCTTGCCTAGTGGACCCTGATTGAATGACTTGAA
GTAATGATCAGGTGGAAGGAGGAACTTGAAGTAACAGCTTCAGTGGTGAT
GGGTGCTGTTGAGTAAATCATTTACGCAAATGTTTTACTCCCTTAATCCT
CATATTCATCCAATGTTTGTATTGTCAGGACAAGTAGTACTCGTCAAATA
CTGCTTTGGAGAGTTCGTATCGTGCACAAGTGTTTGAATGCCTCCTTAAA
TTTTGCAACAAGTATTGAAGTGCACGGGCACTGGACTAAATTTTCTCTGA
GGGGGGAACCATTCTGTGGGTATTTGAGTACTCTCTCTTTCCAACAGGCA
CTGCTCCTCACTCCCAAGAGGTACTCATTCTGAGAGTGCATGTTTGCGGT
ACGCTGGCGCCGTGGGTCGCTAAACCTACCCCTACATAACCTGACCTCAA
CCCTTACCCCAGCTGGCGTGCTCTTCATCTCCTGTCAGGCTTATTATCAG
TAGCCTCGAGTCATGTCATGTCATGTTCTTGTACTTTTCATGCTTCTCTT
GCATCACGCGATCATTCAGTCATCGCGTGTATGACCCTGCAGCAAGCAGG
AGCTGTTGGACGTCATTTCATTCATTCATTGATTTATCCATGTGCCGATG
AATCCACCCCCTCCCAGAGCTGCTGGACGTGCACACCCGCTCCATCGCGC
TCAAGACTGCCTTCAAGGGCGGCGGCTGTCATCTTTCATTCATTCATTCA
TTCATTCATTCACCCGTGTGTCCATGAATCCACCCCCCCACGCAGCAAGC
AGAAGCTGCTGGGCGCCCTCGCCTGCTCCAACCTCATCATGTCAATTTCA
TTTTTCATTCATGCATTAATCCATGTATTCATGAATTCACCCCCCCCCGC
AGCAAGCAGGAGCTGCTGGACGTCCTCGCCTGCTCCATCGCGCTCAAGAC
CGCCTTCAAGGGCGGCGCCTCCGGCATTGAGCGCGAGCTCCCGCTGCTCG
GCAAATCCGTCGCCATGATCTTCCAGAAACGCTCCACGCGCACGCGCGTC
AGCACGGAGACGGGAATGGGCATGCTCGGCGGCCAGGCGCTGTTCCTGGG
TCCCTCGGACATTCAGTTGGGCGTGAACGAGAGTTTGAAGGACACGGCGC
GCGTGCTGGGGCGCTTCAACAGCATCGTGCTCGCGCGCGTGTTCGCGCAC
CGCGACGTCGTCACGCTTCAGGCAAGTGTGCTCATGAACTAATTCATTAA
CGAACTGATTGAATTCACTTGTGTGAACGAGAGCTTAAAGGACACGGCGC
GCGTGCTGGGGCGCTTCAACAGCATCGTGCTCGCGCGCGACTTTGCGCAC
CGCGACGTCGCCACTCTCCGGCGAGTGCTCGTGAATGAATTCATGTGTGC
GAATGAGTTCACACATGGCTTCAGCAAGCTCAATACGATTGGGTTTGAAC
GAAAGCCTGAAGGACACGGCGCGCAGGCTGGGGAGGTCAACAGCATCGTG
CTCGCGCGCGTCTTCGCGCACCGCGACGTCGCCACGCTCCGGGCGAGTGC
TGGTGAATGAATTAATTTGTGTGAATGAATTCTCAAATGAATTTACTGCA
GTTCACTTTTTTTTCTGTGAAACTTAAGCATCTTGCTCGCGCACGCGTTC
GCGCACTGCGACGCTGCAGGTGCACCACCTCGTTGGAGGCCCAGCACCCT
GCATGCACCTTGAACCCTGGCCCCCTGACCCCTCTCCTACCGACCCACCT
GCTGCCCCACGTCTACCCCCCTACCCCCAGGTGTGCTCCAGGCAGAGGCT
GCATCCCCGTGACCAATGAGCTCAGCGACCTGTTGCATCTCAATCCCTAA
CTCCCTCCCCTAGCTACCTACCCATCTGCTATGTCCCATACCTACCTACC
TACATCAGGTGAAGGCCGGCGTCCCTGTGATCAACGCTCAACCCTAGCCC
TAACCTTTGCCTGCCTAACTACCAAATCCGCTGTGGCCCACACCAACCTA
CCCCAGGCGGAGGCAGGCATCCCCGTGATCAACATGAAATCCTAGCCCTA
ACGCCTCCCCTACCTACCTACCCGCTGTCCCAATACCTACCGTTAGGCAG
AGGCCGGCGTCCCCGTCATCAACGCGCTCAGCGACCTGCACCATCCGCTG
CAGACGCTCGCCGACATCATGACCCTAGCCCTAACCTCTAACCCTGACCT
TGTCTACCCCTAGCCCTAACCTCTACCTACCTACCTACCTATTTACCCTA
GGCGGAGGCCGGCGTCCCCGTCATCAACGCGCTCAGCAACCTGCACCACC
CGCTGCAGACCCTCGCCGACATCATGACCTTGCAGGAGCAGTTCGGCGCG
GAGCTCGCGGGGCGCACCGTCGCGTGGGTGGGCGACGGCAACAACGTGCT
GCACGACCTGCTGCTCGGCGCGGCGAAGCTGGGGGTCAACGTGCGCATTG
CGTGCCCGCCGGACTACCTGCCGGACGCGGGCATCATGCAGACGGCCAGC
GACCTCGGCAAG
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Coding sequence (CDS) from alignment at Contig_236:394..4705-

>mRNA_17730 ID=mRNA_17730|Name=jgi.p|Trimin1|152006|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=633bp|location=Sequence derived from alignment at Contig_236:394..4705- (Tribonema minus UTEX_B_3156 )
AGGGGAGTGCCGGCCCTGAGCGGACGCTCATTGATGAGCATAAAGGACCT
CAGCAAGCAGGAGCTGCTGGACGTCCTCGCCTGCTCCATCGCGCTCAAGA
CCGCCTTCAAGGGCGGCGCCTCCGGCATTGAGCGCGAGCTCCCGCTGCTC
GGCAAATCCGTCGCCATGATCTTCCAGAAACGCTCCACGCGCACGCGCGT
CAGCACGGAGACGGGAATGGGCATGCTCGGCGGCCAGGCGCTGTTCCTGG
GTCCCTCGGACATTCAGTTGGGCGTGAACGAGAGTTTGAAGGACACGGCG
CGCGTGCTGGGGCGCTTCAACAGCATCGTGCTCGCGCGCGTGTTCGCGCA
CCGCGACGTCGTCACGCTTCAGGCAAGTGCCGGCGTCCCCGTCATCAACG
CGCTCAGCAACCTGCACCACCCGCTGCAGACCCTCGCCGACATCATGACC
TTGCAGGAGCAGTTCGGCGCGGAGCTCGCGGGGCGCACCGTCGCGTGGGT
GGGCGACGGCAACAACGTGCTGCACGACCTGCTGCTCGGCGCGGCGAAGC
TGGGGGTCAACGTGCGCATTGCGTGCCCGCCGGACTACCTGCCGGACGCG
GGCATCATGCAGACGGCCAGCGACCTCGGCAAG
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