mRNA_17704 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Match: A0A835Z284_9STRA (Lysine-specific demethylase 4A-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z284_9STRA) HSP 1 Score: 356 bits (913), Expect = 9.790e-125 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 Query: 1 MLYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGTVAHLYRTSRARRPLLTPCT 492 MLYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGTVAHLYRTSRARRPLLTPCT Sbjct: 1 MLYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGTVAHLYRTSRARRPLLTPCT 164
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Match: A0A6G0Y7G7_APHCR (Putative lysine-specific demethylase 4B (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0Y7G7_APHCR) HSP 1 Score: 181 bits (460), Expect = 3.610e-54 Identity = 76/144 (52.78%), Postives = 102/144 (70.83%), Query Frame = 1 Query: 4 LYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGT 435 LY G W+ FAWH EDM+L SINYIH G+ KSWY++PP FERLA +F+ ++SCP YLRHK L+SP L ++P+ Q +GE IIT+P YH GFNHGFN+AES+NFA+ RW++ G+RA C+C +V+I++ T Sbjct: 103 LYFGMWKTSFAWHTEDMDLYSINYIHEGSPKSWYAIPPEHGQRFERLANGYFSANYSSCPAYLRHKMFLISPQLLANNSIPFDKITQEKGEFIITFPYGYHAGFNHGFNMAESTNFALPRWVEYGKRALLCRCSKDTVKINMDT 246
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Match: A0A6G0T192_APHGL (Uncharacterized protein n=2 Tax=Aphis TaxID=464929 RepID=A0A6G0T192_APHGL) HSP 1 Score: 181 bits (459), Expect = 2.740e-53 Identity = 77/144 (53.47%), Postives = 102/144 (70.83%), Query Frame = 1 Query: 4 LYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGT 435 LY G W+ F WH EDM+L SINY+H G+ KSWY++PP FERLA + F +F SCP YLRHK +++SP L + ++P+ Q +GEIIIT+P YH GFNHGFNIAES+NFA RW++ G+RA CKCR + V+ ++ T Sbjct: 165 LYFGMWKTTFPWHTEDMDLYSINYLHEGSPKSWYAIPPEHGRRFERLANSLFPADFLSCPAYLRHKMSVISPQVLAKNSIPFDKITQEKGEIIITFPYGYHAGFNHGFNIAESTNFASGRWIEYGKRAQLCKCRKNIVKFNMDT 308
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Match: UPI00139041E0 (lysine-specific demethylase 4B-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00139041E0) HSP 1 Score: 186 bits (471), Expect = 7.790e-53 Identity = 80/150 (53.33%), Postives = 102/150 (68.00%), Query Frame = 1 Query: 4 LYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGTVAHLYR 453 LY G W+A FAWH EDM+L SINYIH GA K+WY VPP ERLA F G F SCP ++RHK T++SP L + ++P+ Q EGE +IT+P YHCGFNHGFN AES+NFA ERW+ G++AG C+C+ SV+I + Y+ Sbjct: 166 LYFGMWKATFAWHTEDMDLYSINYIHYGAPKTWYVVPPEHGPRLERLASGFFPGSFQSCPHFMRHKMTVISPQVLKKFSIPFDKITQEEGEFMITFPYGYHCGFNHGFNCAESTNFASERWIDYGKKAGVCECKTDSVKICMDAFVKKYQ 315
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Match: W7TED2_9STRA (Lysine-specific demethylase 4c isoform 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TED2_9STRA) HSP 1 Score: 188 bits (478), Expect = 1.820e-52 Identity = 83/155 (53.55%), Postives = 110/155 (70.97%), Query Frame = 1 Query: 1 MLYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGTVAHLYRTSRA 465 MLY G WRA+FA+H EDMNL SINY+H G KSWYS+PP + FE LA++ F +C E+LRHKT++ SP L E+ +P+ T +Q GE ++T+PASYH GFNHGFNIAE++NF+ ERWL +GR A C+C+P+SV I++ A RA Sbjct: 167 MLYFGMWRAMFAFHTEDMNLYSINYLHAGRPKSWYSIPPHAQRRFESLAQSLNPQGFRTCSEFLRHKTSIFSPKVLRESGIPFHTLVQEPGEFVVTFPASYHAGFNHGFNIAEATNFSTERWLSKGREAKVCRCQPYSVHINMDDFAAKLAAKRA 321
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Match: A0A7S3YH57_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YH57_9EUKA) HSP 1 Score: 183 bits (465), Expect = 1.970e-52 Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 1 Query: 1 MLYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGTVAH 444 MLY G WRA+FAWHVEDMNL SINY+H G K WY VP S + +RL R+ + ++ CPE+LRHK ++SP L + N+P C+ EGE +IT+P S+H GFN+GFN AES NFA++ W+ EG +A FCKC+P +VRID+ H Sbjct: 201 MLYFGMWRAMFAWHVEDMNLFSINYLHFGKPKQWYCVPASHFEKTDRLLRSLYPHQYRQCPEFLRHKKCVVSPNVLKQHNIPVHRCIHYEGEFMITFPRSFHAGFNYGFNCAESVNFALKSWVAEGVKANFCKCQPDTVRIDMEDFVH 348
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Match: UPI000EFF0F73 (probable lysine-specific demethylase 4B n=1 Tax=Rhopalosiphum maidis TaxID=43146 RepID=UPI000EFF0F73) HSP 1 Score: 179 bits (454), Expect = 2.150e-52 Identity = 76/144 (52.78%), Postives = 101/144 (70.14%), Query Frame = 1 Query: 4 LYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGT 435 LY G W+ F+WH EDM+L SINYIH G+ KSWY++PP FER+A F+ +F+ CP YLRHK +++SP L+ NVP+ Q +GE IIT+P YH GFNHGFN+AES+NFA RW++ G+RA C C +V+ID+ T Sbjct: 179 LYFGMWKTSFSWHTEDMDLYSINYIHEGSPKSWYAIPPEYGRRFERVANGFFSADFSICPAYLRHKMSIISPQLLNTHNVPFDKITQEKGEFIITFPYGYHAGFNHGFNMAESTNFASPRWVEYGKRATLCHCCKDTVKIDMDT 322
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Match: A0A074RJF3_9AGAM ([Histone H3]-trimethyl-L-lysine(9) demethylase n=3 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A074RJF3_9AGAM) HSP 1 Score: 188 bits (477), Expect = 3.160e-52 Identity = 88/160 (55.00%), Postives = 108/160 (67.50%), Query Frame = 1 Query: 4 LYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGTVAHLYRTSRARRPLLT 483 LY G WRA FAWHVEDM+L SINYIH GA K WY++P ADAFE R HF E A CP+++RHK+ L SPA L EA+ +T + +GE +IT+P YH GFN GFN AES NFA+E W++ GRRA FCKC SVR+DV ++ Y + PL T Sbjct: 326 LYFGMWRATFAWHVEDMDLYSINYIHWGAPKYWYAIPSQRADAFEATMRKHFPTEAAECPQFMRHKSFLASPAMLAEADCRPNTLVHHQGEFVITYPRGYHAGFNTGFNCAESVNFALESWIELGRRAQFCKCVGDSVRLDVDSIISDYEARKNPPPLPT 485
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Match: A0A3R7M5V8_PENVA (JmjC domain-containing protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7M5V8_PENVA) HSP 1 Score: 179 bits (453), Expect = 3.180e-52 Identity = 77/153 (50.33%), Postives = 103/153 (67.32%), Query Frame = 1 Query: 4 LYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGTVAHLYRTSR 462 LY G W+ FAWH EDM+L SINY+H GA K+WY++PP ERLA F F +CP YLRHK +L+SP L + ++P++ Q EGEI+IT+P YH GFNHGFN AES+NFA+ RW++ G+RA C+CR V+I + T ++ R Sbjct: 89 LYFGMWKTTFAWHTEDMDLYSINYLHFGAPKTWYAIPPEHGRRLERLANGFFPNSFKACPAYLRHKMSLMSPQILKQYSIPFNKITQDEGEIMITFPYGYHAGFNHGFNCAESTNFAMPRWVEYGKRATQCQCRGDMVKISMDTFVKRFQPER 241
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Match: A0A6G0TB85_APHGL (Uncharacterized protein n=2 Tax=Aphis TaxID=464929 RepID=A0A6G0TB85_APHGL) HSP 1 Score: 179 bits (455), Expect = 4.200e-52 Identity = 74/144 (51.39%), Postives = 103/144 (71.53%), Query Frame = 1 Query: 4 LYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARAHFAGEFASCPEYLRHKTTLLSPAKLDEANVPYSTCLQSEGEIIITWPASYHCGFNHGFNIAESSNFAIERWLKEGRRAGFCKCRPHSVRIDVGT 435 LY G W+ F+WH EDM+L SINYIH G KSWY++PP FER+A F+ +F++CP YLRHK +++SP L + ++P+ Q +GE IIT+P YH G+NHGFN+AES+NFA RW++ G+RA CKC+ +V+ID+ T Sbjct: 220 LYFGMWKTSFSWHTEDMDLYSINYIHEGKPKSWYAIPPEHGRRFERVANGFFSADFSACPAYLRHKMSVISPQLLAKNSIPFDKITQEKGEFIITFPYGYHAGYNHGFNMAESTNFASPRWVEYGKRAQLCKCQTDNVKIDMDT 363 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180274 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17704 ID=mRNA_17704|Name=jgi.p|Trimin1|180274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_212:171264..173366+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGTACGTCGGCACGTGGCGCGCCCTCTTCGCGTGGCACGTCGAGGAback to top protein sequence of jgi.p|Trimin1|180274 >Trimin1|180274|e_gw1.212.18.1 ID=Trimin1|180274|e_gw1.212.18.1|Name=jgi.p|Trimin1|180274|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp MLYVGTWRALFAWHVEDMNLCSINYIHRGAHKSWYSVPPSSADAFERLARback to top mRNA from alignment at Contig_212:171264..173366+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17704 ID=mRNA_17704|Name=jgi.p|Trimin1|180274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2103bp|location=Sequence derived from alignment at Contig_212:171264..173366+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_212:171264..173366+ >mRNA_17704 ID=mRNA_17704|Name=jgi.p|Trimin1|180274|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_212:171264..173366+ (Tribonema minus UTEX_B_3156 )back to top |