mRNA_17625 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|46701
Unique NamemRNA_17625
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A836CIF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF9_9STRA)

HSP 1 Score: 661 bits (1705), Expect = 5.450e-239
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1
Query:   88 MIKTRRCWCMVHGVPGRPAWLQQLFRTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSSCVGIFNGGELCAVLSIGRCI 1089
            MIKTRRCWCMVHGVPGRPAWLQQLFRTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSSCVGIFNGGELCAVLSIGRCI
Sbjct:    1 MIKTRRCWCMVHGVPGRPAWLQQLFRTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSSCVGIFNGGELCAVLSIGRCI 334          
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A835Z1Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z3_9STRA)

HSP 1 Score: 465 bits (1197), Expect = 1.650e-159
Identity = 248/274 (90.51%), Postives = 258/274 (94.16%), Query Frame = 1
Query:  208 LAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSS 1029
            LAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIY+KARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFE KLATFIFVVSA  SALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETE RGRVEAYR ARIDDA  VL GF+AIA++NAAFSK+AS+AFFKKLL+GTPVLKDR A VAFGF +PDLLLAALA+WHAFAV PF+HTISMQSHFM IAIDQYLQAEA  AAGTSE SS
Sbjct:  203 LAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYRKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFE-KLATFIFVVSALWSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETERRGRVEAYRTARIDDAGLVLLGFVAIAEENAAFSKEASLAFFKKLLDGTPVLKDRHAMVAFGFKKPDLLLAALAQWHAFAVVPFEHTISMQSHFMHIAIDQYLQAEASSAAGTSEPSS 475          
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A835Z0B3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0B3_9STRA)

HSP 1 Score: 397 bits (1020), Expect = 2.200e-136
Identity = 208/221 (94.12%), Postives = 213/221 (96.38%), Query Frame = 1
Query:  235 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALA 897
            MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSAL LTVTTEESRVDGYSAP FTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGR EAYR ARIDDA  VL GF+A+AKKNAAFSK+AS+AFFKKLL+GTPVLKDRDA VAFGFDEPDLLLAALA
Sbjct:    1 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALRLTVTTEESRVDGYSAPGFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRAEAYRTARIDDAGLVLLGFVAMAKKNAAFSKEASLAFFKKLLDGTPVLKDRDAMVAFGFDEPDLLLAALA 221          
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A836CJC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC5_9STRA)

HSP 1 Score: 379 bits (972), Expect = 4.920e-128
Identity = 201/274 (73.36%), Postives = 223/274 (81.39%), Query Frame = 1
Query:  208 LAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSS 1029
            L VRLE AM+ LA+LPI+ P   PG R RAI  IYKK  K RPIV+IDINE M PATLSKLL+ AKQLGFEE LAT IFVV+A  SALGL V+ EESRV GY APDFTEDEAL Y AKHLS FP M EFVV+Q+GTRAMHLVSLCRKCQGA+SETECR R+ AYR ARIDDA  VL GF+AIA++N  +SKDAS+AFFKKL +GTPVL D DA  AFGFD+PDLL AALAKW AF VDPF HTISMQSHFM+ AID+ LQAEA+GAAGT+  SS
Sbjct:   24 LEVRLELAMLALAELPIINPTVRPGSRCRAILAIYKKVHKCRPIVVIDINEAMAPATLSKLLLEAKQLGFEEYLATLIFVVTAPWSALGLPVSLEESRVRGYRAPDFTEDEALTYAAKHLSAFPDMTEFVVKQIGTRAMHLVSLCRKCQGAESETECRRRLAAYRTARIDDAALVLLGFVAIAQENETYSKDASLAFFKKLKDGTPVLDDGDAWDAFGFDDPDLLFAALAKWPAFPVDPFDHTISMQSHFMKTAIDEDLQAEAVGAAGTNAPSS 297          
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A836CL53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL53_9STRA)

HSP 1 Score: 372 bits (956), Expect = 3.590e-125
Identity = 199/276 (72.10%), Postives = 222/276 (80.43%), Query Frame = 1
Query:  202 TALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSS 1029
            T L  RLE  ++  + L   A     G  LRAI T Y++   RRP+ +IDIN KMEPA LS LL+AA+QLGF+EKLATFIFVVSASRSALGLTV   +SRV GY APDF   EA  YLAKHLSPFP + EFVVQQVGTRAM LV +C   +G +SE ECR RVEAYR ARIDDARD LDGF+AIA++NAAFSKDAS+AFFKKLL GT VLKD+DARVAFGF +PDLLLAALA+WHAFAVDPF HTISMQSHFMQIA+DQYLQAEALGAAGTSE SS
Sbjct:   51 TDLEQRLEELVLDCSGLSDDAATGRIGYCLRAILTFYQRVYNRRPVFVIDINSKMEPAALSDLLLAARQLGFQEKLATFIFVVSASRSALGLTVGITQSRVRGYRAPDFNPAEAHNYLAKHLSPFPELTEFVVQQVGTRAMDLVEVCSGSRGVESELECRERVEAYRTARIDDARDALDGFVAIAEENAAFSKDASLAFFKKLLAGTSVLKDKDARVAFGFKKPDLLLAALAQWHAFAVDPFDHTISMQSHFMQIAVDQYLQAEALGAAGTSEPSS 326          
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A836CEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG5_9STRA)

HSP 1 Score: 370 bits (949), Expect = 1.280e-124
Identity = 200/285 (70.18%), Postives = 225/285 (78.95%), Query Frame = 1
Query:  202 TALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLN---------GTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSS 1029
            T L  RLE  ++KLA LP   PKAD GDRLRAI T Y+   KRRP+V+IDINE+  PATLSKLL+AAKQLGF+EKLATFIFVVSASRSALGLT+   +SRV GY APDF+EDEALAYLAKHL PFPGMAEFVVQQ+GTRA+ LV LC +C+G + E ECR RVEAYREA I DAR  L GF+AIAKKN AFSK+ASVAFF++LL          GT VL D  A  AFGF+EP+LLL ALAK+HAFA+DPF HTISMQSHFMQ AI+QYLQ EA  AAGTSE  S
Sbjct:    8 TDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSERRS 292          
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A836CEX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX4_9STRA)

HSP 1 Score: 370 bits (951), Expect = 8.280e-124
Identity = 200/282 (70.92%), Postives = 224/282 (79.43%), Query Frame = 1
Query:  202 TALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLN---------GTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSE 1020
            T L  RLE  ++KLA LP   PKAD GDRLRAI T Y+   KRRP+V+IDINE+  PATLSKLL+AAKQLGF+EKLATFIFVVSASRSALGLT+   +SRV GY APDF+EDEALAYLAKHL PFPGMAEFVVQQ+GTRAM LV LC +C+G + E ECR RVEAYREA I DAR  L GF+AIAKKN AFSK+ASVAFF++LL          GT VL D  A  AFGF+EP+LLL ALAK+HAFA+DPF HTISMQSHFMQ AI+QYLQ EA  AAGTSE
Sbjct:   83 TDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRAMDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSE 364          
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A835Z4Z8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Z8_9STRA)

HSP 1 Score: 312 bits (799), Expect = 1.420e-102
Identity = 161/164 (98.17%), Postives = 161/164 (98.17%), Query Frame = 1
Query:  235 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDAR 726
            MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQG KSETECRGRVEAYR ARI DAR
Sbjct:    1 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGVKSETECRGRVEAYRAARIKDAR 164          
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A835YHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU7_9STRA)

HSP 1 Score: 318 bits (814), Expect = 4.710e-101
Identity = 176/283 (62.19%), Postives = 204/283 (72.08%), Query Frame = 1
Query:  202 TALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNG--------------TPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAA 1008
            T L  RLE  ++K A LP   PKAD GDRLRAI T Y+K   RRP+V+I I+E+  PATLSKLL+AA+QLGF+EKLATFIFVVSA RSALGL +   +++V GY APDFTEDEALAYLAKHL   PGMAEF VQQ+GTRAM LV LC  C+G +SETECR RV A R  RI DAR  L GF+ IAKKN AF + A +AFF+KLL                  VL D  A VAFGF++P LLL+ALA++HAF VDPF HTISMQSH M+IAI +YLQA A  AA
Sbjct:  142 TDLEQRLEQLLLKPAGLPGHGPKADLGDRLRAILTFYQKVYDRRPVVVIHIDERTAPATLSKLLLAAEQLGFQEKLATFIFVVSAYRSALGLPIGLSQTQVLGYRAPDFTEDEALAYLAKHLPSCPGMAEFAVQQIGTRAMDLVELCSACRGVESETECRARVAALRAMRIGDARFALRGFVGIAKKNKAFEEKAGLAFFEKLLAAHGGDAALARACVLDDDVLTDYHAAVAFGFEKPALLLSALAEYHAFVVDPFYHTISMQSHCMRIAIQEYLQAVASSAA 424          
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A835Z9J5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J5_9STRA)

HSP 1 Score: 263 bits (673), Expect = 2.340e-84
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1
Query:   88 MIKTRRCWCMVHGVPGRPAWLQQLFRTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVT 486
            MIKTRRCWCMVHGVPGRPAWLQQL RTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVT
Sbjct:    1 MIKTRRCWCMVHGVPGRPAWLQQLLRTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVT 133          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A836CIF9_9STRA5.450e-239100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1Z3_9STRA1.650e-15990.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0B3_9STRA2.200e-13694.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJC5_9STRA4.920e-12873.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CL53_9STRA3.590e-12572.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEG5_9STRA1.280e-12470.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEX4_9STRA8.280e-12470.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4Z8_9STRA1.420e-10298.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YHU7_9STRA4.710e-10162.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9J5_9STRA2.340e-8499.25Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_233contigContig_233:31073..34241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|46701|CE46700_59
Hectar predicted targeting categorymitochondrion
TranscriptId47023
TrackFilteredModels1
ProteinId46701
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|46701gene_17625Tribonema minus UTEX_B_3156 geneContig_233 31073..34241 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17625_2exon_17625_2Tribonema minus UTEX_B_3156 exonContig_233 31073..32052 -
exon_17625_1exon_17625_1Tribonema minus UTEX_B_3156 exonContig_233 34078..34241 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17625UTR3_17625Tribonema minus UTEX_B_3156 three_prime_UTRContig_233 31073..31124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17625CDS_17625Tribonema minus UTEX_B_3156 CDSContig_233 34078..34154 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17625UTR5_17625Tribonema minus UTEX_B_3156 five_prime_UTRContig_233 34155..34241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|46701Trimin1|46701|CE46700_59Tribonema minus UTEX_B_3156 polypeptideContig_233 31125..34154 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17625 ID=mRNA_17625|Name=jgi.p|Trimin1|46701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1144bp|location=Sequence derived from alignment at Contig_233:31073..34241- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCTCAACGAGGCACTGAAAGGGGAAAAGCTCGTGCAGCGTGATTGCTTT
GCGGACTTCAAACGCTTGGTGGACGGTGCGACGGCTGATGATCAAAACCC
GTCGCTGCTGGTGTATGGTCCACGGGGTGCCGGGAAGACCAGCATGGTTG
CAGCAGCTCTTCAGAACACGGCTGGCGTGCTGTACATGTCATATCAGGGT
GACGGCCTTAGCGGTGCGCTTGGAGCATGCGATGATGAAGCTCGCTAAGC
TCCCGATTGTTGCGCCAAAAGCCGACCCCGGCGACCGTCTTCGAGCCATC
TTTACCATCTACAAAAAAGCGCGCAAACGCCGGCCGATCGTCATCATTGA
CATCAATGAGAAGATGGAGCCGGCGACTCTCAGCAAACTGCTGATGGCGG
CCAAGCAGCTGGGGTTTGAGGAGAAGCTGGCCACTTTCATATTCGTCGTG
TCAGCCTCACGGAGTGCACTGGGCCTGACGGTGACCACCGAGGAGTCTCG
TGTGGACGGGTACTCTGCACCGGACTTTACGGAAGATGAGGCGCTTGCAT
ACCTCGCCAAGCATCTCAGCCCCTTCCCTGGTATGGCAGAGTTTGTGGTG
CAGCAGGTTGGGACGCGTGCCATGCACCTGGTGAGCCTGTGCCGCAAGTG
CCAGGGCGCAAAGTCAGAGACGGAGTGCCGGGGGCGGGTGGAGGCGTACA
GGGAAGCACGCATCGATGATGCGCGGGATGTGTTGGATGGCTTCTTGGCA
ATTGCTAAGAAGAATGCAGCCTTCAGCAAGGACGCGAGTGTGGCGTTCTT
CAAGAAGCTGCTGAACGGCACTCCCGTGCTGAAAGACAGAGACGCAAGGG
TCGCGTTCGGGTTTGACGAGCCGGATTTGCTCCTCGCAGCACTTGCAAAG
TGGCATGCATTTGCTGTTGATCCGTTCAAGCACACAATCAGCATGCAGTC
GCATTTCATGCAGATAGCAATTGATCAGTACCTGCAAGCTGAGGCCCTTG
GTGCGGCTGGCACAAGTGAGCTCAGCTCTTGTGTAGGCATCTTCAACGGC
GGCGAGCTTTGTGCTGTCCTGTCAATAGGTCGCTGTATATGATTTCACAG
AAGCACACGCGCGCGCACACACAATTGCACATCTTGTGCCTTCA
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protein sequence of jgi.p|Trimin1|46701

>Trimin1|46701|CE46700_59 ID=Trimin1|46701|CE46700_59|Name=jgi.p|Trimin1|46701|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MIKTRRCWCMVHGVPGRPAWLQQLFRTRLACCTCHIRVTALAVRLEHAMM
KLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSK
LLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTED
EALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGR
VEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKD
RDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQ
AEALGAAGTSELSSCVGIFNGGELCAVLSIGRCI*
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mRNA from alignment at Contig_233:31073..34241-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17625 ID=mRNA_17625|Name=jgi.p|Trimin1|46701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3169bp|location=Sequence derived from alignment at Contig_233:31073..34241- (Tribonema minus UTEX_B_3156 )
TGCTCAACGAGGCACTGAAAGGGGAAAAGCTCGTGCAGCGTGATTGCTTT GCGGACTTCAAACGCTTGGTGGACGGTGCGACGGCTGATGATCAAAACCC GTCGCTGCTGGTGTATGGTCCACGGGGTGCCGGGAAGACCAGCATGGTTG CAGCAGCTCTTCAGGTACGCTGTGCATGACCCCCACCATCAATGTCTGCT GCATGTACATCCACGACTACTGCAATGACTCTTCTGTGTATCTGATGTTG CCAGCACGCCGGTGGCACCATCAACATGCGGAAACCCTTTAGGGTAGCGG TGCTCTATGACGCTTCTTCACGTTGTCAAGCACAAAGCAATAGTCCTTTG CAGGCCAATTAGCGATCAAAGCCAACCAAAGCACATATTGTGCTGCTGAG CAGAAGAATGCACAAGAGAAGGTCGAAATGGAGCATCCCTCACATACACG GCATGCCAGGCTCTTCCTGAGCGCCTGTGCAGCAGCAATGCGCTGTGTGA GCAGCTCGATACACCTGCTTTGTTAAGAGTCTGTAACGTTGCAGTCCGTG TGATGCAGAGGTAGTGACAGTGTAGGCGTTGTCCGCACTCTCAGCAGCTA CAGCTGGAGCGTGGCTTCAGAGCCACTCCTTGGCACAGCTGTGGTCACTG GTGGCCTCAATCAGTGTCCAGCCAGCCGGAATTGCAGCAGGTGCTGTGCC TTTTCATGGCATGTGCTCCGTGCCCACTGCACATTTTCTAACTGCACCCT GTTGTGACAACAGGGCAGTTTTTCTAGTATTGCAGCTCACGTGATCACTA CATTTTGCGCAATGGATGGGTTTTCCAGTCTGTCATCACCATCCGTGTGA TGCAGGACAGTCATCAACCAGTCCTTTGTACTGCTTCTCAGAAATCATGT TCCTCGAGTTTGTGCAACTTGCTGCTGCTGATTTAGTGCAGATGTAAACG TCACCATCGTTGTCTGTGTGAAGGTGATAAGTTACTGATATCGTTCATAA GTCAAGTTGTTTTCATAGGCGTACTGCATGGCAACGGCCCATGCAAATGG GCTGGCCTTTGCATGCACATATCATGATGATGTTGCTTGTCTGTCCGTCA GGCCATGGCTACTGACAAGAACATGAAGTACGCTACTTGTTGCTCAATTG AATTTCACTTCCTGCTGAAACGTTTTGCTCTATGTAGACAGGGCGTACGA GCAGCTTGTCCCATATCTTACAATGAGTGCTCTAAAATGGGTGTTGGAGA ATGCCACCGTGCTAAACCGCACAAGTGTAGATGCAGGACTTTGATGGCCG CAGCCATGGCTTCCTGTTTCTGTGAGGTATGCAGCAGCTACGCCATTAGA AAAGGTGCATCTGGCCAAATGCCGACGAACGTGTGCGACCCTGGTCAGAG CACTTCGTATTCTGATTCAGATCTGCTTTTTTACACCAGAATTGTACTAT ATGATTGAACAGTGATATATAGTCACAAGCTACTGACGTGTGTCTCAGCT CATCGTGCAGTTTTTTTTGGCAATGCTAAGATGTACTCTCACTTCTGTGG AATCCATCCAACTGATGGAAGGGGCTGATTGCTCTGGAGCTAGCTTTTTG TGGCTTTGTATACATTACTTTGTATACCCGCTTTCACTATTTTAAATGGG TAAAAACCATCCGTGCATGTGCTACGTGTCATAGCGTGTTCTCTTGACGG CAATAGCTGCAGACAGCAAAATAGCCAACATCTAGGACTGTCAACGACTC CAGTTGCCAGTTTGACATTGATGTCAAAGAGCTCTCTCCATTGGCGCAGT TGCTATTTTCTCAGGTTCACATAATGTTTGTCTGAGCATTACCACGCAAT TGGATATGTACACACATACTGGTCGAGTGGTAGACATTGTCGGGAGGCCG TTTTACTGTAGCTTCATGCTCTGTCTGGGGGGTATGGAGTTTGCTGACGC AGGGTAGCCTCTGGTGCAGCATGGTCAAAGATGTGGGTATGAGTGGATTG CACATTGCGCAACACTTGTATGCCTGCACATGCCTGTTCACTGGTAACAT CCTAAATGTTGTGGACCGACGCTGATGTCACAAAAAATCATTGTCAGCGC CTGTGGTCATCGAGCATTTGCATTGCATTCACCGTGTGCTGACCGTTTTG TATGCTGCGTTGTTGTCTTGGACGTGCCCCCACTCTCAGAACACGGCTGG CGTGCTGTACATGTCATATCAGGGTGACGGCCTTAGCGGTGCGCTTGGAG CATGCGATGATGAAGCTCGCTAAGCTCCCGATTGTTGCGCCAAAAGCCGA CCCCGGCGACCGTCTTCGAGCCATCTTTACCATCTACAAAAAAGCGCGCA AACGCCGGCCGATCGTCATCATTGACATCAATGAGAAGATGGAGCCGGCG ACTCTCAGCAAACTGCTGATGGCGGCCAAGCAGCTGGGGTTTGAGGAGAA GCTGGCCACTTTCATATTCGTCGTGTCAGCCTCACGGAGTGCACTGGGCC TGACGGTGACCACCGAGGAGTCTCGTGTGGACGGGTACTCTGCACCGGAC TTTACGGAAGATGAGGCGCTTGCATACCTCGCCAAGCATCTCAGCCCCTT CCCTGGTATGGCAGAGTTTGTGGTGCAGCAGGTTGGGACGCGTGCCATGC ACCTGGTGAGCCTGTGCCGCAAGTGCCAGGGCGCAAAGTCAGAGACGGAG TGCCGGGGGCGGGTGGAGGCGTACAGGGAAGCACGCATCGATGATGCGCG GGATGTGTTGGATGGCTTCTTGGCAATTGCTAAGAAGAATGCAGCCTTCA GCAAGGACGCGAGTGTGGCGTTCTTCAAGAAGCTGCTGAACGGCACTCCC GTGCTGAAAGACAGAGACGCAAGGGTCGCGTTCGGGTTTGACGAGCCGGA TTTGCTCCTCGCAGCACTTGCAAAGTGGCATGCATTTGCTGTTGATCCGT TCAAGCACACAATCAGCATGCAGTCGCATTTCATGCAGATAGCAATTGAT CAGTACCTGCAAGCTGAGGCCCTTGGTGCGGCTGGCACAAGTGAGCTCAG CTCTTGTGTAGGCATCTTCAACGGCGGCGAGCTTTGTGCTGTCCTGTCAA TAGGTCGCTGTATATGATTTCACAGAAGCACACGCGCGCGCACACACAAT TGCACATCTTGTGCCTTCA
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Coding sequence (CDS) from alignment at Contig_233:31073..34241-

>mRNA_17625 ID=mRNA_17625|Name=jgi.p|Trimin1|46701|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_233:31073..34241- (Tribonema minus UTEX_B_3156 )
ATGATCAAAACCCGTCGCTGCTGGTGTATGGTCCACGGGGTGCCGGGAAG
ACCAGCATGGTTGCAGCAGCTCTTCAGAACACGGCTGGCGTGCTGTACAT
GTCATATCAGGGTGACGGCCTTAGCGGTGCGCTTGGAGCATGCGATGATG
AAGCTCGCTAAGCTCCCGATTGTTGCGCCAAAAGCCGACCCCGGCGACCG
TCTTCGAGCCATCTTTACCATCTACAAAAAAGCGCGCAAACGCCGGCCGA
TCGTCATCATTGACATCAATGAGAAGATGGAGCCGGCGACTCTCAGCAAA
CTGCTGATGGCGGCCAAGCAGCTGGGGTTTGAGGAGAAGCTGGCCACTTT
CATATTCGTCGTGTCAGCCTCACGGAGTGCACTGGGCCTGACGGTGACCA
CCGAGGAGTCTCGTGTGGACGGGTACTCTGCACCGGACTTTACGGAAGAT
GAGGCGCTTGCATACCTCGCCAAGCATCTCAGCCCCTTCCCTGGTATGGC
AGAGTTTGTGGTGCAGCAGGTTGGGACGCGTGCCATGCACCTGGTGAGCC
TGTGCCGCAAGTGCCAGGGCGCAAAGTCAGAGACGGAGTGCCGGGGGCGG
GTGGAGGCGTACAGGGAAGCACGCATCGATGATGCGCGGGATGTGTTGGA
TGGCTTCTTGGCAATTGCTAAGAAGAATGCAGCCTTCAGCAAGGACGCGA
GTGTGGCGTTCTTCAAGAAGCTGCTGAACGGCACTCCCGTGCTGAAAGAC
AGAGACGCAAGGGTCGCGTTCGGGTTTGACGAGCCGGATTTGCTCCTCGC
AGCACTTGCAAAGTGGCATGCATTTGCTGTTGATCCGTTCAAGCACACAA
TCAGCATGCAGTCGCATTTCATGCAGATAGCAATTGATCAGTACCTGCAA
GCTGAGGCCCTTGGTGCGGCTGGCACAAGTGAGCTCAGCTCTTGTGTAGG
CATCTTCAACGGCGGCGAGCTTTGTGCTGTCCTGTCAATAGGTCGCTGTA
TATGA
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