mRNA_17625 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A836CIF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF9_9STRA) HSP 1 Score: 661 bits (1705), Expect = 5.450e-239 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1 Query: 88 MIKTRRCWCMVHGVPGRPAWLQQLFRTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSSCVGIFNGGELCAVLSIGRCI 1089 MIKTRRCWCMVHGVPGRPAWLQQLFRTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSSCVGIFNGGELCAVLSIGRCI Sbjct: 1 MIKTRRCWCMVHGVPGRPAWLQQLFRTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSSCVGIFNGGELCAVLSIGRCI 334
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A835Z1Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z3_9STRA) HSP 1 Score: 465 bits (1197), Expect = 1.650e-159 Identity = 248/274 (90.51%), Postives = 258/274 (94.16%), Query Frame = 1 Query: 208 LAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSS 1029 LAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIY+KARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFE KLATFIFVVSA SALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETE RGRVEAYR ARIDDA VL GF+AIA++NAAFSK+AS+AFFKKLL+GTPVLKDR A VAFGF +PDLLLAALA+WHAFAV PF+HTISMQSHFM IAIDQYLQAEA AAGTSE SS Sbjct: 203 LAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYRKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFE-KLATFIFVVSALWSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETERRGRVEAYRTARIDDAGLVLLGFVAIAEENAAFSKEASLAFFKKLLDGTPVLKDRHAMVAFGFKKPDLLLAALAQWHAFAVVPFEHTISMQSHFMHIAIDQYLQAEASSAAGTSEPSS 475
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A835Z0B3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0B3_9STRA) HSP 1 Score: 397 bits (1020), Expect = 2.200e-136 Identity = 208/221 (94.12%), Postives = 213/221 (96.38%), Query Frame = 1 Query: 235 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALA 897 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSAL LTVTTEESRVDGYSAP FTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGR EAYR ARIDDA VL GF+A+AKKNAAFSK+AS+AFFKKLL+GTPVLKDRDA VAFGFDEPDLLLAALA Sbjct: 1 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALRLTVTTEESRVDGYSAPGFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRAEAYRTARIDDAGLVLLGFVAMAKKNAAFSKEASLAFFKKLLDGTPVLKDRDAMVAFGFDEPDLLLAALA 221
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A836CJC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC5_9STRA) HSP 1 Score: 379 bits (972), Expect = 4.920e-128 Identity = 201/274 (73.36%), Postives = 223/274 (81.39%), Query Frame = 1 Query: 208 LAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSS 1029 L VRLE AM+ LA+LPI+ P PG R RAI IYKK K RPIV+IDINE M PATLSKLL+ AKQLGFEE LAT IFVV+A SALGL V+ EESRV GY APDFTEDEAL Y AKHLS FP M EFVV+Q+GTRAMHLVSLCRKCQGA+SETECR R+ AYR ARIDDA VL GF+AIA++N +SKDAS+AFFKKL +GTPVL D DA AFGFD+PDLL AALAKW AF VDPF HTISMQSHFM+ AID+ LQAEA+GAAGT+ SS Sbjct: 24 LEVRLELAMLALAELPIINPTVRPGSRCRAILAIYKKVHKCRPIVVIDINEAMAPATLSKLLLEAKQLGFEEYLATLIFVVTAPWSALGLPVSLEESRVRGYRAPDFTEDEALTYAAKHLSAFPDMTEFVVKQIGTRAMHLVSLCRKCQGAESETECRRRLAAYRTARIDDAALVLLGFVAIAQENETYSKDASLAFFKKLKDGTPVLDDGDAWDAFGFDDPDLLFAALAKWPAFPVDPFDHTISMQSHFMKTAIDEDLQAEAVGAAGTNAPSS 297
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A836CL53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL53_9STRA) HSP 1 Score: 372 bits (956), Expect = 3.590e-125 Identity = 199/276 (72.10%), Postives = 222/276 (80.43%), Query Frame = 1 Query: 202 TALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNGTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSS 1029 T L RLE ++ + L A G LRAI T Y++ RRP+ +IDIN KMEPA LS LL+AA+QLGF+EKLATFIFVVSASRSALGLTV +SRV GY APDF EA YLAKHLSPFP + EFVVQQVGTRAM LV +C +G +SE ECR RVEAYR ARIDDARD LDGF+AIA++NAAFSKDAS+AFFKKLL GT VLKD+DARVAFGF +PDLLLAALA+WHAFAVDPF HTISMQSHFMQIA+DQYLQAEALGAAGTSE SS Sbjct: 51 TDLEQRLEELVLDCSGLSDDAATGRIGYCLRAILTFYQRVYNRRPVFVIDINSKMEPAALSDLLLAARQLGFQEKLATFIFVVSASRSALGLTVGITQSRVRGYRAPDFNPAEAHNYLAKHLSPFPELTEFVVQQVGTRAMDLVEVCSGSRGVESELECRERVEAYRTARIDDARDALDGFVAIAEENAAFSKDASLAFFKKLLAGTSVLKDKDARVAFGFKKPDLLLAALAQWHAFAVDPFDHTISMQSHFMQIAVDQYLQAEALGAAGTSEPSS 326
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A836CEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG5_9STRA) HSP 1 Score: 370 bits (949), Expect = 1.280e-124 Identity = 200/285 (70.18%), Postives = 225/285 (78.95%), Query Frame = 1 Query: 202 TALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLN---------GTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSELSS 1029 T L RLE ++KLA LP PKAD GDRLRAI T Y+ KRRP+V+IDINE+ PATLSKLL+AAKQLGF+EKLATFIFVVSASRSALGLT+ +SRV GY APDF+EDEALAYLAKHL PFPGMAEFVVQQ+GTRA+ LV LC +C+G + E ECR RVEAYREA I DAR L GF+AIAKKN AFSK+ASVAFF++LL GT VL D A AFGF+EP+LLL ALAK+HAFA+DPF HTISMQSHFMQ AI+QYLQ EA AAGTSE S Sbjct: 8 TDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRALDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSERRS 292
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A836CEX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX4_9STRA) HSP 1 Score: 370 bits (951), Expect = 8.280e-124 Identity = 200/282 (70.92%), Postives = 224/282 (79.43%), Query Frame = 1 Query: 202 TALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLN---------GTPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAAGTSE 1020 T L RLE ++KLA LP PKAD GDRLRAI T Y+ KRRP+V+IDINE+ PATLSKLL+AAKQLGF+EKLATFIFVVSASRSALGLT+ +SRV GY APDF+EDEALAYLAKHL PFPGMAEFVVQQ+GTRAM LV LC +C+G + E ECR RVEAYREA I DAR L GF+AIAKKN AFSK+ASVAFF++LL GT VL D A AFGF+EP+LLL ALAK+HAFA+DPF HTISMQSHFMQ AI+QYLQ EA AAGTSE Sbjct: 83 TDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQIVHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLPPFPGMAEFVVQQIGTRAMDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVAFFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLALAKYHAFAIDPFDHTISMQSHFMQTAIEQYLQPEAPSAAGTSE 364
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A835Z4Z8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Z8_9STRA) HSP 1 Score: 312 bits (799), Expect = 1.420e-102 Identity = 161/164 (98.17%), Postives = 161/164 (98.17%), Query Frame = 1 Query: 235 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDAR 726 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQG KSETECRGRVEAYR ARI DAR Sbjct: 1 MKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGVKSETECRGRVEAYRAARIKDAR 164
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A835YHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU7_9STRA) HSP 1 Score: 318 bits (814), Expect = 4.710e-101 Identity = 176/283 (62.19%), Postives = 204/283 (72.08%), Query Frame = 1 Query: 202 TALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVTTEESRVDGYSAPDFTEDEALAYLAKHLSPFPGMAEFVVQQVGTRAMHLVSLCRKCQGAKSETECRGRVEAYREARIDDARDVLDGFLAIAKKNAAFSKDASVAFFKKLLNG--------------TPVLKDRDARVAFGFDEPDLLLAALAKWHAFAVDPFKHTISMQSHFMQIAIDQYLQAEALGAA 1008 T L RLE ++K A LP PKAD GDRLRAI T Y+K RRP+V+I I+E+ PATLSKLL+AA+QLGF+EKLATFIFVVSA RSALGL + +++V GY APDFTEDEALAYLAKHL PGMAEF VQQ+GTRAM LV LC C+G +SETECR RV A R RI DAR L GF+ IAKKN AF + A +AFF+KLL VL D A VAFGF++P LLL+ALA++HAF VDPF HTISMQSH M+IAI +YLQA A AA Sbjct: 142 TDLEQRLEQLLLKPAGLPGHGPKADLGDRLRAILTFYQKVYDRRPVVVIHIDERTAPATLSKLLLAAEQLGFQEKLATFIFVVSAYRSALGLPIGLSQTQVLGYRAPDFTEDEALAYLAKHLPSCPGMAEFAVQQIGTRAMDLVELCSACRGVESETECRARVAALRAMRIGDARFALRGFVGIAKKNKAFEEKAGLAFFEKLLAAHGGDAALARACVLDDDVLTDYHAAVAFGFEKPALLLSALAEYHAFVVDPFYHTISMQSHCMRIAIQEYLQAVASSAA 424
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Match: A0A835Z9J5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J5_9STRA) HSP 1 Score: 263 bits (673), Expect = 2.340e-84 Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1 Query: 88 MIKTRRCWCMVHGVPGRPAWLQQLFRTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVT 486 MIKTRRCWCMVHGVPGRPAWLQQL RTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVT Sbjct: 1 MIKTRRCWCMVHGVPGRPAWLQQLLRTRLACCTCHIRVTALAVRLEHAMMKLAKLPIVAPKADPGDRLRAIFTIYKKARKRRPIVIIDINEKMEPATLSKLLMAAKQLGFEEKLATFIFVVSASRSALGLTVT 133 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|46701 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17625 ID=mRNA_17625|Name=jgi.p|Trimin1|46701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1144bp|location=Sequence derived from alignment at Contig_233:31073..34241- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGCTCAACGAGGCACTGAAAGGGGAAAAGCTCGTGCAGCGTGATTGCTTTback to top protein sequence of jgi.p|Trimin1|46701 >Trimin1|46701|CE46700_59 ID=Trimin1|46701|CE46700_59|Name=jgi.p|Trimin1|46701|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp MIKTRRCWCMVHGVPGRPAWLQQLFRTRLACCTCHIRVTALAVRLEHAMMback to top mRNA from alignment at Contig_233:31073..34241- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17625 ID=mRNA_17625|Name=jgi.p|Trimin1|46701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3169bp|location=Sequence derived from alignment at Contig_233:31073..34241- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_233:31073..34241- >mRNA_17625 ID=mRNA_17625|Name=jgi.p|Trimin1|46701|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_233:31073..34241- (Tribonema minus UTEX_B_3156 )back to top |