mRNA_17597 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|44488
Unique NamemRNA_17597
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|44488 vs. uniprot
Match: A0A835Z1C3_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1C3_9STRA)

HSP 1 Score: 281 bits (719), Expect = 2.220e-93
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 3 
Query:  129 MSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCA 632
            MSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCA
Sbjct:    1 MSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCA 168
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BLAST of jgi.p|Trimin1|44488 vs. uniprot
Match: D7G8S5_ECTSI (V-type proton ATPase proteolipid subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S5_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 2.470e-77
Identity = 146/163 (89.57%), Postives = 152/163 (93.25%), Query Frame = 3 
Query:  141 LETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 629
            +ETCPSSAAFFGFMG A+++VF NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL G+I  P    NT FSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEAL LYG+IVALILSQQSYSC
Sbjct:    1 METCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGAIGMPSDTGNT-FSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQQSYSC 162
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BLAST of jgi.p|Trimin1|44488 vs. uniprot
Match: F0YK80_AURAN (V-type proton ATPase proteolipid subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YK80_AURAN)

HSP 1 Score: 238 bits (607), Expect = 2.630e-76
Identity = 145/166 (87.35%), Postives = 153/166 (92.17%), Query Frame = 3 
Query:  138 SLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQN--TKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 629
            S ETCP+SA FFGFMG  +ALVF+NIGAAYGTAKSGVGI+SMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQG+IT+PD      TKFSSFSGYA+LAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQE+LFVGMILILIFAEAL LYGLIVALILSQQS  C
Sbjct:    6 STETCPTSAPFFGFMGVTSALVFANIGAAYGTAKSGVGIASMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGAITKPDAGSGGTTKFSSFSGYAYLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQQSADC 171
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BLAST of jgi.p|Trimin1|44488 vs. uniprot
Match: A0A7S3GT47_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT47_9STRA)

HSP 1 Score: 236 bits (601), Expect = 2.210e-75
Identity = 139/165 (84.24%), Postives = 151/165 (91.52%), Query Frame = 3 
Query:  138 SLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCA 632
            S ETCP+SA FFGFMG  AAL F+NIGAAYGTAKSGVGI+SMGVM+PGLVM+NIIPVVMAGVLGIYGLIVAVI+QGSIT P  +  TK+SSF+GYA L+AGLCCGLSG XXXXXXXXX DAGVRAVGQQE+LFVGMILILIFAEAL LYGLIVALILSQQS+SCA
Sbjct:    6 SRETCPTSAPFFGFMGVTAALCFANIGAAYGTAKSGVGIASMGVMHPGLVMKNIIPVVMAGVLGIYGLIVAVIIQGSITVPSADGATKYSSFTGYAHLSAGLCCGLSGLXXXXXXXXXGDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQQSFSCA 170
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BLAST of jgi.p|Trimin1|44488 vs. uniprot
Match: A0A7S2RWN8_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWN8_9STRA)

HSP 1 Score: 225 bits (574), Expect = 2.040e-71
Identity = 138/162 (85.19%), Postives = 149/162 (91.98%), Query Frame = 3 
Query:  144 ETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 629
            E CP+SA FFGFMG +AALVF+NIGAAYGTAKSGVGI+SMGVM P LVMRNIIPV+MAGVLGIYGLIVAVIL GSIT+P   ++ KFSSFSG+AFLAAGLCCGLSGXXXXXXXXXXX AGVRAVGQQE+LFVG+ILILIFAEAL LYGLIVALILSQQS SC
Sbjct:    4 ELCPTSAPFFGFMGVSAALVFANIGAAYGTAKSGVGIASMGVMKPNLVMRNIIPVIMAGVLGIYGLIVAVILNGSITKPANNES-KFSSFSGFAFLAAGLCCGLSGXXXXXXXXXXXXAGVRAVGQQEKLFVGVILILIFAEALGLYGLIVALILSQQSVSC 164
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BLAST of jgi.p|Trimin1|44488 vs. uniprot
Match: A0A7S2GLL8_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLL8_9STRA)

HSP 1 Score: 223 bits (568), Expect = 2.230e-70
Identity = 136/167 (81.44%), Postives = 152/167 (91.02%), Query Frame = 3 
Query:  129 MSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 629
            +S+++E CP+ A FFGFMG ++ALVF+NIGAAYGTAKSG+GI+SMGVM P LVMRNIIPV+MAGVLGIYGLIVAVILQGSIT+P TE  TKFSS+SG+AFLAAGLCCGLSGXXXXXXXXXXX  GVRAVGQQE+LFVG+ILILIFAEAL LYGLIVALILS Q Y C
Sbjct:    6 LSTAVEACPTYAPFFGFMGVSSALVFANIGAAYGTAKSGIGIASMGVMKPELVMRNIIPVIMAGVLGIYGLIVAVILQGSITKP-TEGVTKFSSYSGFAFLAAGLCCGLSGXXXXXXXXXXXXXGVRAVGQQEKLFVGVILILIFAEALGLYGLIVALILSMQIYEC 171
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BLAST of jgi.p|Trimin1|44488 vs. uniprot
Match: A0A835YJ26_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ26_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.250e-68
Identity = 129/166 (77.71%), Postives = 146/166 (87.95%), Query Frame = 3 
Query:  135 SSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCA 632
            SS+ETCP+ A  FGF+G AA+LV +N GAAYGTAK+G+GI+SMGVM+PG+VMRNIIPVVMAGVLGIYGLIV+VIL G+IT       T +S+FSG+A LAAGLCCG+SG XXXXXXX   DAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC+
Sbjct:    2 SSMETCPTWAPLFGFLGVAASLVLANTGAAYGTAKAGLGIASMGVMHPGMVMRNIIPVVMAGVLGIYGLIVSVILLGTITGTTPTGVTTYSTFSGFAHLAAGLCCGMSGLXXXXXXXIVGDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCS 167
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BLAST of jgi.p|Trimin1|44488 vs. uniprot
Match: A0A7S3LI96_9STRA (V-type proton ATPase proteolipid subunit n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LI96_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.070e-66
Identity = 139/193 (72.02%), Postives = 156/193 (80.83%), Query Frame = 3 
Query:   78 SCSCLTQHTFRTHAQAT---------MSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 629
            SCS L    F+T + ++         MS  +ETCP+SA FFGFMG  +ALVF+NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+QGSI  P    + ++S ++G+A LAAGLCCGL  XXXXXXXXXXX  GVRAVGQQE+LFVGMILILIFAEAL LYGLIVALILSQ S+ C
Sbjct:   24 SCSSLCGIWFQTPSASSTLYLFLLFIMSVEMETCPASAPFFGFMGVTSALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSILSPQNGLS-QYSLYTGFAHLAAGLCCGLXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSFVC 215
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BLAST of jgi.p|Trimin1|44488 vs. uniprot
Match: B8BTR9_THAPS (V-type proton ATPase proteolipid subunit n=19 Tax=Ochrophyta TaxID=2696291 RepID=B8BTR9_THAPS)

HSP 1 Score: 213 bits (543), Expect = 1.090e-66
Identity = 132/163 (80.98%), Postives = 144/163 (88.34%), Query Frame = 3 
Query:  141 LETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 629
            +ETCP+SA FFGFMG  AALVF+NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+QGSI  P    + ++S ++G+A LAAGLCCGL  XXXXXXXXXXX  GVRAVGQQE+LFVGMILILIFAEAL LYGLIVALILSQ S+ C
Sbjct:    1 METCPASAPFFGFMGVTAALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSIVAPQNGLS-QYSLYTGFAHLAAGLCCGLXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSFVC 162
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BLAST of jgi.p|Trimin1|44488 vs. uniprot
Match: A0A7R9WX88_9STRA (V-type proton ATPase proteolipid subunit n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WX88_9STRA)

HSP 1 Score: 214 bits (546), Expect = 5.070e-66
Identity = 140/188 (74.47%), Postives = 153/188 (81.38%), Query Frame = 3 
Query:   93 TQHTFRTHAQA--------TMSSSL-ETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 629
            T   F+TH  A        TMSS++ ETCP+SA FFGFMG  +ALVF+NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+QGSIT P    +  +S ++G+A LAAGLCC    XXXXXXXXXXX  GVRAVGQQE+LFVGMILILIFAEAL LYGLIVALILSQ SY C
Sbjct:   57 TAQVFQTHPTANTTTTTTFTMSSAITETCPASAPFFGFMGVTSALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSITAPQGGVSA-YSLYTGFAHLAAGLCCXXXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSYEC 243
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|44488 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1C3_9STRA2.220e-93100.00V-type proton ATPase proteolipid subunit n=1 Tax=T... [more]
D7G8S5_ECTSI2.470e-7789.57V-type proton ATPase proteolipid subunit n=1 Tax=E... [more]
F0YK80_AURAN2.630e-7687.35V-type proton ATPase proteolipid subunit n=2 Tax=P... [more]
A0A7S3GT47_9STRA2.210e-7584.24V-type proton ATPase proteolipid subunit n=1 Tax=S... [more]
A0A7S2RWN8_9STRA2.040e-7185.19V-type proton ATPase proteolipid subunit n=1 Tax=R... [more]
A0A7S2GLL8_9STRA2.230e-7081.44V-type proton ATPase proteolipid subunit n=1 Tax=D... [more]
A0A835YJ26_9STRA1.250e-6877.71V-type proton ATPase proteolipid subunit n=1 Tax=T... [more]
A0A7S3LI96_9STRA1.070e-6672.02V-type proton ATPase proteolipid subunit n=2 Tax=A... [more]
B8BTR9_THAPS1.090e-6680.98V-type proton ATPase proteolipid subunit n=19 Tax=... [more]
A0A7R9WX88_9STRA5.070e-6674.47V-type proton ATPase proteolipid subunit n=2 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_220contigContig_220:171200..174478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|44488|CE44487_278
KEGG TC3.A.2.2
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036
KEGG ModuleM00160,M00695
KEGG Pathwayko00190,ko01100,ko01522,ko03015,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04142,ko04145,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04721,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04966,ko04970,ko04971,ko04976,ko05012,ko05020,ko05030,ko05031,ko05032,ko05110,ko05120,ko05146,ko05152,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05323,ko05414,map00190,map01100,map01522,map03015,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04142,map04145,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04721,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04966,map04970,map04971,map04976,map05012,map05020,map05030,map05031,map05032,map05110,map05120,map05146,map05152,map05165,map05166,map05169,map05200,map05203,map05205,map05323,map05414
KEGG koko:K02155,ko:K04345,ko:K15542
EC2.7.11.11
GOsGO:0000003,GO:0000041,GO:0000220,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006403,GO:0006605,GO:0006623,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006826,GO:0006873,GO:0006875,GO:0006878,GO:0006879,GO:0006885,GO:0006886,GO:0006887,GO:0006897,GO:0006955,GO:0006996,GO:0007033,GO:0007034,GO:0007035,GO:0007040,GO:0007042,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019899,GO:0019953,GO:0019954,GO:0022414,GO:0022603,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030139,GO:0030141,GO:0030177,GO:0030587,GO:0030641,GO:0030659,GO:0030666,GO:0030667,GO:0030670,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031625,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032940,GO:0032991,GO:0033036,GO:0033176,GO:0033177,GO:0033179,GO:0033181,GO:0033227,GO:0033365,GO:0033572,GO:0034220,GO:0034613,GO:0035577,GO:0035751,GO:0036230,GO:0036442,GO:0042119,GO:0042221,GO:0042582,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043434,GO:0043492,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045055,GO:0045169,GO:0045184,GO:0045321,GO:0045335,GO:0045851,GO:0046903,GO:0046907,GO:0046916,GO:0046933,GO:0046961,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0055065,GO:0055067,GO:0055070,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060142,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0070838,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0072512,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090662,GO:0090702,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099131,GO:0099132,GO:0099503,GO:0101002,GO:0101003,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Preferred nameATP6V0C
DescriptionATP hydrolysis coupled proton transport
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0636@1|root,KOG0232@2759|Eukaryota
Evalue3.57e-80
Seed ortholog2880.D7G8S5
Hectar predicted targeting categorysignal peptide
TranscriptId44810
TrackFilteredModels1
ProteinId44488
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|44488gene_17597Tribonema minus UTEX_B_3156 geneContig_220 171200..174478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|44488Trimin1|44488|CE44487_278Tribonema minus UTEX_B_3156 polypeptideContig_220 171648..174310 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17597_1exon_17597_1Tribonema minus UTEX_B_3156 exonContig_220 171200..171321 +
exon_17597_2exon_17597_2Tribonema minus UTEX_B_3156 exonContig_220 171642..171729 +
exon_17597_3exon_17597_3Tribonema minus UTEX_B_3156 exonContig_220 172556..172707 +
exon_17597_4exon_17597_4Tribonema minus UTEX_B_3156 exonContig_220 174038..174478 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17597UTR5_17597Tribonema minus UTEX_B_3156 five_prime_UTRContig_220 171200..171321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17597CDS_17597Tribonema minus UTEX_B_3156 CDSContig_220 171648..171729 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17597UTR3_17597Tribonema minus UTEX_B_3156 three_prime_UTRContig_220 174311..174478 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17597 ID=mRNA_17597|Name=jgi.p|Trimin1|44488|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=803bp|location=Sequence derived from alignment at Contig_220:171200..174478+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAAAGCCGAAGCCGAGGAAGGAAGAGGATCGCTGCGTTCGCCCTGAAAAT
CCTCTCTGACTTAAGGAGCACGTCCGCAGCTGCTCTTGCCTGACTCAACA
CACCTTCCGGACCCACGCACAGGCAACCATGAGCTCGTCGTTGGAGACGT
GCCCGTCGTCTGCGGCCTTCTTCGGCTTCATGGGGACTGCTGCTGCGTTG
GTGTTCTCCAACATTGGCGCAGCTTATGGCACAGCCAAGTCGGGCGTGGG
TATCTCCTCCATGGGGGTCATGAACCCTGGACTGGTCATGCGTAACATCA
TTCCTGTGGTCATGGCGGGAGTGCTGGGCATCTACGGACTCATTGTTGCC
GTTATCCTTCAGGGCTCCATCACCCAGCCCGACACGGAACAAAACACCAA
GTTCTCCTCGTTCTCCGGCTACGCGTTCCTGGCGGCGGGCCTGTGCTGCG
GCCTGAGCGGACTCGCGGCGGGCATGGCCATTGGCATTGTTGGTGACGCG
GGCGTGCGCGCCGTTGGCCAACAGGAGCGCCTCTTTGTGGGCATGATCCT
TATCCTCATCTTCGCCGAGGCGCTCGCGCTGTACGGCCTCATCGTCGCGC
TCATCCTCAGCCAGCAGAGCTACTCGTGCGCGTGAGAGCGGCGGCGAGAG
CGGCGCGCGCAGCAGCGGTGGCGGCGGCAGCGGCGGAGGCGGCAGCAGCG
GCGGCGCTCCGCTGCCGCGCCTGCGATGGCAGCAGCAGCAGCGTGTGGTG
CCGTGGCGGAGGCGGCGTGGTGTGCATGAGCGGCGGCGGCATCAGTGCTC
AGA
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protein sequence of jgi.p|Trimin1|44488

>Trimin1|44488|CE44487_278 ID=Trimin1|44488|CE44487_278|Name=jgi.p|Trimin1|44488|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=169bp
MSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNP
GLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAF
LAAGLCCGLSGLAAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALA
LYGLIVALILSQQSYSCA*
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mRNA from alignment at Contig_220:171200..174478+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17597 ID=mRNA_17597|Name=jgi.p|Trimin1|44488|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3279bp|location=Sequence derived from alignment at Contig_220:171200..174478+ (Tribonema minus UTEX_B_3156 )
CAAAGCCGAAGCCGAGGAAGGAAGAGGATCGCTGCGTTCGCCCTGAAAAT
CCTCTCTGACTTAAGGAGCACGTCCGCAGCTGCTCTTGCCTGACTCAACA
CACCTTCCGGACCCACGCACAGGTGAAAAGCGTTTCCTTGATTTTGATCC
CAACACGAGCTGCAGCCTGCAGGTCTGGCTCACAGCTCGATATCATTGCT
AAGAGCGGGCATGCAATACAACTGCAGCTGCCCTGCAAGCATCAGGCTTG
GCTTTCCTTGTGTGCGGAGCATAGGATACGCAGGCAGGAAATGACAATCT
CCTTCATCACCGGGGGGGCGCCAGGATCGTTGTCGCAGCCCGCATTGCTG
CAAGTGATTGCAAAGATTATTATAGTTTTTGTTGGCTAGGCATCGAGTGA
GCTGAAGCTGGTGTTGATTGTTGCGTTGTTTGTGCTGTTCAGGCAACCAT
GAGCTCGTCGTTGGAGACGTGCCCGTCGTCTGCGGCCTTCTTCGGCTTCA
TGGGGACTGCTGCTGCGTTGGTGTTCTCCAGTAAGTGCTACACTACTTTT
GACTTGCAAGGCAAATATGTTGTTGCCACAGCCTTCTTAGTCTTGTTGCT
GATCAACGAAGCATCAAACTTGCGCTTGAGTTGTAAATGCAGATTGACAA
TGCCTGAATGAAATGCTGGCTGCTTTGTTAGATCTTGCCATGACTACATT
TTCACGATCCTGAACCGGCAGAACAGCATCAGGATCCGGCAGAACAGCTG
TTGTATGCAACTTCTTACAATTTGTTCAAGTCACCCTTTGAATTGCCAGG
TGGCTAGCAACTATCACATGCAAACAACTCACATGCATAATGCAGGTGGT
GACATTATGATCTGTATATCCTATGCTTTCAGACAAAACCAGCTAGTATT
GTTATGGTGACTTGGTAAGTAGTATGCGATTCATCGTGTTGTTGAGCTTT
CATCAACCATCAGACAAGCAAGGCTGGCGATGCAAAACATGAGTGGATTT
TCTGCCGACGTATGTGGCCATTCTGCGTTCAGCGCTGTGTGTCTGTAGCA
ATGATGGCAACAATCAAAATCACGCTACGCGGCGTGTGACTCGTGTCGTG
CAACTGAGCACATTAGGTGCCAGGCTCGTTATGAGCATCACAGAAGTACA
TAGGTTGATCGCACGAAAACACAAGACAGTGTTATCTGACATGGGGCACG
CTGTCTGCATGCCGGTGATAATCAAGCCAACACAACAACAATTAAAAGAC
TGCAGAGCAACACATTACAGCCTGTGTCCTCAAAAGCAAGCGTAATGCCC
TGTGAAGCTGAAGCGTCAACTTCAGCGCATTCAACCGCCTTCGAACCGCC
TTGCAGACATTGGCGCAGCTTATGGCACAGCCAAGTCGGGCGTGGGTATC
TCCTCCATGGGGGTCATGAACCCTGGACTGGTCATGCGTAACATCATTCC
TGTGGTCATGGCGGGAGTGCTGGGCATCTACGGACTCATTGTTGCCGTTA
TCCTTCAGGTGTGTGTTTGGCGCAAATGAAGCAGAGTGCACAACATGTCT
GCAAGCGACTGTCGTGTGTTGGCTGGTTGTGTATGTCTCGGCATGACCTG
CATGTCAATACTTCAACTGTTGCACCTGTGTGTGTGTGTCCAGTCATTGG
GCTGAATGGTCTAGAAGCAAGCACACTGCATGGGCTAAGTCTTTAATGGG
TCGCCAACCAACACCATTGAGATATATGCGAGGTGAACTCAATACAGTTT
GTGCATTTCAACTAGACTGCATGAATGGACTGAATTAACAGCTTTGCAGG
CATACACGAGTTAGTTGGAATGGGATTAAGCAAACGGACTGGGCGCCATC
CGCTTGATGTTGCGACCATGAATCCTCAACAGTAGAGCAAGGTGCTTGAA
TTTGGAGAAGTGTAGACTAGTGTCCCAAGTCTAGAAATGCTGGCTCATGT
TTCGCGTTGCCAGATCAGGAACCTCACTACTCAGCGCTGCCGAAGGTTGG
CGCAATGTATGTCGTTTAGATGAGGATCACAAACACATTAGCAAGATGAT
GGTGTCGTTTGCAGCGTAGTGATGCACATTCTGCAGATTGCGTACAGAAT
CACTACATACTTCTTAAAAACAGTCATGTGGGTCTTCATGTTATGGACCA
GAACTGTTTGCAAAATTGTACTAGGCGACATCAGCATTGTAAAGCAGTTC
TGGCACTGTATGGGCCACAATGCTGATGCACTGCACAGGAGCGTGCTTCT
CTTCGCTGACCTGTTAGCATTGTCTGCCAGTCGACTGCAACAGAGTTACT
CAACAATGCCGCGTTCAGTTCAGGCGATTGCTGAAGGGGTCAAAGCACCA
AAGTCATGACAACTTGCAAAGACACAGCATTGCGTTGTACGCTCAGGAGT
GAATTGGTTTCGAGGTAGGTGCTTCAGTTATTGGCGCCCTCGTTCAGTAC
CTGTCAGCCTGCTGCACATCAAGCATTAGTGCAGCGCTTCTCTATGCCGT
GTGAAAAGCACTACTACACGCACATCTTGATATCCTACATGGCATGTGCC
CACATATTAGAAAATAAAGCCTTCTCCCTGTGGTATACTGCTTCAACTTC
ACCATTCAACAGGCTAGCATCAGTTCAGTAATGTCCCTGCTTGGAGTCAG
GATGCTGTCTTCGCTAGCACAAGCACCGCCGCAACGGCCACTTTGCCGAC
CACCTGTCTTGTCTTTGGTTTACGTGCTGATCTGCACTTCTGCGCTATGC
TCACCTTTCTCTCTTGCGCCACAATAAGCTCGCTTGTATACAATATGCTG
CTGCTCACTCGTACGCTCACCGCTTCTGTCATCTTCAGGGCTCCATCACC
CAGCCCGACACGGAACAAAACACCAAGTTCTCCTCGTTCTCCGGCTACGC
GTTCCTGGCGGCGGGCCTGTGCTGCGGCCTGAGCGGACTCGCGGCGGGCA
TGGCCATTGGCATTGTTGGTGACGCGGGCGTGCGCGCCGTTGGCCAACAG
GAGCGCCTCTTTGTGGGCATGATCCTTATCCTCATCTTCGCCGAGGCGCT
CGCGCTGTACGGCCTCATCGTCGCGCTCATCCTCAGCCAGCAGAGCTACT
CGTGCGCGTGAGAGCGGCGGCGAGAGCGGCGCGCGCAGCAGCGGTGGCGG
CGGCAGCGGCGGAGGCGGCAGCAGCGGCGGCGCTCCGCTGCCGCGCCTGC
GATGGCAGCAGCAGCAGCGTGTGGTGCCGTGGCGGAGGCGGCGTGGTGTG
CATGAGCGGCGGCGGCATCAGTGCTCAGA
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Coding sequence (CDS) from alignment at Contig_220:171200..174478+

>mRNA_17597 ID=mRNA_17597|Name=jgi.p|Trimin1|44488|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=507bp|location=Sequence derived from alignment at Contig_220:171200..174478+ (Tribonema minus UTEX_B_3156 )
ATGAGCTCGTCGTTGGAGACGTGCCCGTCGTCTGCGGCCTTCTTCGGCTT
CATGGGGACTGCTGCTGCGTTGGTGTTCTCCAACATTGGCGCAGCTTATG
GCACAGCCAAGTCGGGCGTGGGTATCTCCTCCATGGGGGTCATGAACCCT
GGACTGGTCATGCGTAACATCATTCCTGTGGTCATGGCGGGAGTGCTGGG
CATCTACGGACTCATTGTTGCCGTTATCCTTCAGGGCTCCATCACCCAGC
CCGACACGGAACAAAACACCAAGTTCTCCTCGTTCTCCGGCTACGCGTTC
CTGGCGGCGGGCCTGTGCTGCGGCCTGAGCGGACTCGCGGCGGGCATGGC
CATTGGCATTGTTGGTGACGCGGGCGTGCGCGCCGTTGGCCAACAGGAGC
GCCTCTTTGTGGGCATGATCCTTATCCTCATCTTCGCCGAGGCGCTCGCG
CTGTACGGCCTCATCGTCGCGCTCATCCTCAGCCAGCAGAGCTACTCGTG
CGCGTGA
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