mRNA_17549 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A835Z526_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z526_9STRA) HSP 1 Score: 205 bits (522), Expect = 2.250e-66 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 Query: 1 MGASDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375 MGASDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC Sbjct: 1 MGASDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 125
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A835YHU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU4_9STRA) HSP 1 Score: 163 bits (412), Expect = 2.940e-49 Identity = 85/123 (69.11%), Postives = 96/123 (78.05%), Query Frame = 1 Query: 7 ASDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375 + DNVTYSGGQEG QGGFYGSGGAR+KA +LHHRPEAVA+ EDI RL A+ +LNA TIEIK LKKTLSSPAM+ELLNRLEI +EPVWGLTQ ER++VR+ARRKVNTC Sbjct: 29 SGDNVTYSGGQEGTQGGFYGSGGARSKAAPNLHHRPEAVASQEDIERLKAVMEDVMGMESELAKANSLNARTIEIKGNLKKTLSSPAMMELLNRLEIQSEPVWGLTQKERDLVRSARRKVNTC 151
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: D7FI52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI52_ECTSI) HSP 1 Score: 133 bits (335), Expect = 1.700e-37 Identity = 70/123 (56.91%), Postives = 88/123 (71.54%), Query Frame = 1 Query: 10 SDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARL-SAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375 SDNVTYSGGQ GVQGGFYG+GGAR++A HHRPEA+AA++DI RL A+ ++ +IE+KS +KK LSSP M+ELL RL+I +PVWGLTQ ERE+V+ AR KVN+C Sbjct: 34 SDNVTYSGGQAGVQGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLKIKDQPVWGLTQEERELVKVAREKVNSC 156
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A7S2IEF3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEF3_9STRA) HSP 1 Score: 109 bits (273), Expect = 4.170e-28 Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 1 Query: 7 ASDNVTYSGGQ--EGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375 +SDN+TYSGGQ EG QGGFYGSGG+RA + HRPE A ED+ +LS+I + + +IE++ ++KK ++SP +++ LNRLEI EPVWGLT ER++V+ AR KVN C Sbjct: 33 SSDNITYSGGQATEG-QGGFYGSGGSRASLTPASEHRPEMQAIAEDVTKLSSIMGEVETLEHLLQSETEVTSRSIELRGSIKKLMTSPDVMDCLNRLEIQGEPVWGLTVEERDLVKFARSKVNEC 156
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A6S9H6B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9H6B1_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 3.560e-23 Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = 1 Query: 10 SDNVTYSGGQ--EGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLN-----AHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375 S+N+TYSGGQ EG QGG+YGSGG+RA + HRPE +A D+ +S+I N + +IE++ ++KK ++SP ++E LNRLEI EPVWGL+ ER++V+ AR K+N C Sbjct: 38 SNNITYSGGQATEG-QGGYYGSGGSRASLTPASEHRPEMLALAADVQTISSIMVEVEMLENLLQSETEENQGAITSRSIELRGSIKKLMTSPDVMECLNRLEIQGEPVWGLSSDERDLVKLARSKINEC 165
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A7S2R7N6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7N6_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 3.280e-21 Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 1 Query: 16 NVTYSGGQEGV-QGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXX-----TLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375 ++TYSGG QGGFYGSGGARA G + H PEA+ L+DI L + ++N +IE+K+ +K+ +SS AM +LL+RLEIN P WGL+ ER++V AR K N C Sbjct: 55 SITYSGGHASDGQGGFYGSGGARAGKEGQIAHHPEAIVELQDIRLLEQVMSEVATLEDQLATSMATHGSSVNEQSIELKAAIKRKMSSKAMAQLLDRLEINGTPRWGLSTKERKLVNLARDKFNAC 180
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A7S3UYX7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYX7_HETAK) HSP 1 Score: 88.2 bits (217), Expect = 3.420e-19 Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 1 Query: 13 DNVTYSGGQEGV-QGGFYGSGGARAKAPGS--LHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNA-HTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375 +N+TYSGGQ QGGFYGSG RA A R A+AALED+A+L A+ + ++ ++TLKK L+S EL+ RL +N +PVWGLTQ+ERE+VR+ + +N+C Sbjct: 79 NNITYSGGQATTGQGGFYGSGATRAAAQARDRFEQRAGALAALEDVAQLRALMDQVEALDADLRAQEEQGSPRAVQTRATLKKLLTSARTTELMKRLMMNGQPVWGLTQSERELVRSVQEAINSC 203
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: F0Y4E5_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4E5_AURAN) HSP 1 Score: 86.3 bits (212), Expect = 4.800e-19 Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 10 SDNVTYSGGQEGV-QGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375 S+++TYSGGQ V QGGFYGSGGAR AVA+ E +A L+ I ++ IE K++LKK ++SPA +++++ LE+ EPVWGLTQAER +VR AR C Sbjct: 23 SNSITYSGGQASVGQGGFYGSGGARCTKR-KTEWNASAVASAEKVASLAEIMDQAYALRETITAADPVSEAAIESKASLKKLMTSPATVKVIDCLEVKNEPVWGLTQAERSLVREAREMSLNC 144
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A4D9CV18_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV18_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 7.490e-19 Identity = 55/121 (45.45%), Postives = 69/121 (57.02%), Query Frame = 1 Query: 16 NVTYSGGQE-GVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375 ++TYSGGQ QGGFYG+GGARA HRPEAVA DI L + L I IKS +KK S M ELL RLE+ +PVWGL+ +ER++V+ ARR+ N+C Sbjct: 44 SITYSGGQATSGQGGFYGAGGARANKT-QTKHRPEAVAHAADIKSLRMLMEEVEELEVQLRSADELPKQ-ISIKSAIKKKASGRDMTELLKRLELKGQPVWGLSVSERDLVKEARRRFNSC 162
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A1Z5KRA7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRA7_FISSO) HSP 1 Score: 85.9 bits (211), Expect = 9.370e-19 Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 1 Query: 16 NVTYSGGQ--EGVQGGFYGSGGARAKAPGSLHH---RPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375 ++TYSGGQ EG QGGFY SGGAR+ R +A +D+ ++ + +N+ +IE+KS +KK ++ P+++E LNRLE+ +PVWGL+ EREM+ AR KVN C Sbjct: 34 SITYSGGQPTEG-QGGFYASGGARSNVDDYASDDETRGRMIALSQDVEKIEQVMTAVESLESQLLDNAGVNSKSIELKSAIKKLMTDPSVLESLNRLELEGQPVWGLSTEEREMIIMAREKVNAC 157 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17549 ID=mRNA_17549|Name=jgi.p|Trimin1|180046|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_207:175094..177269- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGAGCATCCGATAACGTGACTTACTCTGGGGGGCAAGAGGGCGTGCAback to top protein sequence of jgi.p|Trimin1|180046 >Trimin1|180046|e_gw1.207.38.1 ID=Trimin1|180046|e_gw1.207.38.1|Name=jgi.p|Trimin1|180046|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp MGASDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLback to top mRNA from alignment at Contig_207:175094..177269- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17549 ID=mRNA_17549|Name=jgi.p|Trimin1|180046|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2176bp|location=Sequence derived from alignment at Contig_207:175094..177269- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_207:175094..177269- >mRNA_17549 ID=mRNA_17549|Name=jgi.p|Trimin1|180046|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_207:175094..177269- (Tribonema minus UTEX_B_3156 )back to top |