mRNA_17549 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180046
Unique NamemRNA_17549
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A835Z526_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z526_9STRA)

HSP 1 Score: 205 bits (522), Expect = 2.250e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
Query:    1 MGASDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375
            MGASDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC
Sbjct:    1 MGASDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 125          
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A835YHU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU4_9STRA)

HSP 1 Score: 163 bits (412), Expect = 2.940e-49
Identity = 85/123 (69.11%), Postives = 96/123 (78.05%), Query Frame = 1
Query:    7 ASDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375
            + DNVTYSGGQEG QGGFYGSGGAR+KA  +LHHRPEAVA+ EDI RL A+               +LNA TIEIK  LKKTLSSPAM+ELLNRLEI +EPVWGLTQ ER++VR+ARRKVNTC
Sbjct:   29 SGDNVTYSGGQEGTQGGFYGSGGARSKAAPNLHHRPEAVASQEDIERLKAVMEDVMGMESELAKANSLNARTIEIKGNLKKTLSSPAMMELLNRLEIQSEPVWGLTQKERDLVRSARRKVNTC 151          
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: D7FI52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI52_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.700e-37
Identity = 70/123 (56.91%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   10 SDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARL-SAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375
            SDNVTYSGGQ GVQGGFYG+GGAR++A    HHRPEA+AA++DI RL  A+                ++  +IE+KS +KK LSSP M+ELL RL+I  +PVWGLTQ ERE+V+ AR KVN+C
Sbjct:   34 SDNVTYSGGQAGVQGGFYGAGGARSQASPQAHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLKIKDQPVWGLTQEERELVKVAREKVNSC 156          
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A7S2IEF3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEF3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.170e-28
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    7 ASDNVTYSGGQ--EGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375
            +SDN+TYSGGQ  EG QGGFYGSGG+RA    +  HRPE  A  ED+ +LS+I                + + +IE++ ++KK ++SP +++ LNRLEI  EPVWGLT  ER++V+ AR KVN C
Sbjct:   33 SSDNITYSGGQATEG-QGGFYGSGGSRASLTPASEHRPEMQAIAEDVTKLSSIMGEVETLEHLLQSETEVTSRSIELRGSIKKLMTSPDVMDCLNRLEIQGEPVWGLTVEERDLVKFARSKVNEC 156          
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A6S9H6B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9H6B1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.560e-23
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = 1
Query:   10 SDNVTYSGGQ--EGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLN-----AHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375
            S+N+TYSGGQ  EG QGG+YGSGG+RA    +  HRPE +A   D+  +S+I                 N     + +IE++ ++KK ++SP ++E LNRLEI  EPVWGL+  ER++V+ AR K+N C
Sbjct:   38 SNNITYSGGQATEG-QGGYYGSGGSRASLTPASEHRPEMLALAADVQTISSIMVEVEMLENLLQSETEENQGAITSRSIELRGSIKKLMTSPDVMECLNRLEIQGEPVWGLSSDERDLVKLARSKINEC 165          
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A7S2R7N6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7N6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.280e-21
Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   16 NVTYSGGQEGV-QGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXX-----TLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375
            ++TYSGG     QGGFYGSGGARA   G + H PEA+  L+DI  L  +                    ++N  +IE+K+ +K+ +SS AM +LL+RLEIN  P WGL+  ER++V  AR K N C
Sbjct:   55 SITYSGGHASDGQGGFYGSGGARAGKEGQIAHHPEAIVELQDIRLLEQVMSEVATLEDQLATSMATHGSSVNEQSIELKAAIKRKMSSKAMAQLLDRLEINGTPRWGLSTKERKLVNLARDKFNAC 180          
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A7S3UYX7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYX7_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 3.420e-19
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   13 DNVTYSGGQEGV-QGGFYGSGGARAKAPGS--LHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNA-HTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375
            +N+TYSGGQ    QGGFYGSG  RA A        R  A+AALED+A+L A+                  +   ++ ++TLKK L+S    EL+ RL +N +PVWGLTQ+ERE+VR+ +  +N+C
Sbjct:   79 NNITYSGGQATTGQGGFYGSGATRAAAQARDRFEQRAGALAALEDVAQLRALMDQVEALDADLRAQEEQGSPRAVQTRATLKKLLTSARTTELMKRLMMNGQPVWGLTQSERELVRSVQEAINSC 203          
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: F0Y4E5_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4E5_AURAN)

HSP 1 Score: 86.3 bits (212), Expect = 4.800e-19
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   10 SDNVTYSGGQEGV-QGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375
            S+++TYSGGQ  V QGGFYGSGGAR            AVA+ E +A L+ I                ++   IE K++LKK ++SPA +++++ LE+  EPVWGLTQAER +VR AR     C
Sbjct:   23 SNSITYSGGQASVGQGGFYGSGGARCTKR-KTEWNASAVASAEKVASLAEIMDQAYALRETITAADPVSEAAIESKASLKKLMTSPATVKVIDCLEVKNEPVWGLTQAERSLVREAREMSLNC 144          
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A4D9CV18_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV18_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.490e-19
Identity = 55/121 (45.45%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   16 NVTYSGGQE-GVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375
            ++TYSGGQ    QGGFYG+GGARA       HRPEAVA   DI  L  +                L    I IKS +KK  S   M ELL RLE+  +PVWGL+ +ER++V+ ARR+ N+C
Sbjct:   44 SITYSGGQATSGQGGFYGAGGARANKT-QTKHRPEAVAHAADIKSLRMLMEEVEELEVQLRSADELPKQ-ISIKSAIKKKASGRDMTELLKRLELKGQPVWGLSVSERDLVKEARRRFNSC 162          
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Match: A0A1Z5KRA7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRA7_FISSO)

HSP 1 Score: 85.9 bits (211), Expect = 9.370e-19
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   16 NVTYSGGQ--EGVQGGFYGSGGARAKAPGSLHH---RPEAVAALEDIARLSAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 375
            ++TYSGGQ  EG QGGFY SGGAR+           R   +A  +D+ ++  +                +N+ +IE+KS +KK ++ P+++E LNRLE+  +PVWGL+  EREM+  AR KVN C
Sbjct:   34 SITYSGGQPTEG-QGGFYASGGARSNVDDYASDDETRGRMIALSQDVEKIEQVMTAVESLESQLLDNAGVNSKSIELKSAIKKLMTDPSVLESLNRLELEGQPVWGLSTEEREMIIMAREKVNAC 157          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180046 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A835Z526_9STRA2.250e-66100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YHU4_9STRA2.940e-4969.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FI52_ECTSI1.700e-3756.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2IEF3_9STRA4.170e-2848.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6S9H6B1_9STRA3.560e-2343.41Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2R7N6_9STRA3.280e-2142.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3UYX7_HETAK3.420e-1942.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y4E5_AURAN4.800e-1943.09Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A4D9CV18_9STRA7.490e-1945.45Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A1Z5KRA7_FISSO9.370e-1940.00Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_207contigContig_207:175094..177269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180046|e_gw1.207.38.1
Max annot lvl2759|Eukaryota
EggNOG OGs2E2F6@1|root,2S9NX@2759|Eukaryota
Evalue2.79e-38
Seed ortholog2880.D7FI52
Hectar predicted targeting categoryother localisation
TranscriptId180368
TrackFilteredModels1
ProteinId180046
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180046gene_17549Tribonema minus UTEX_B_3156 geneContig_207 175094..177269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180046Trimin1|180046|e_gw1.207.38.1Tribonema minus UTEX_B_3156 polypeptideContig_207 175094..177269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17549_3exon_17549_3Tribonema minus UTEX_B_3156 exonContig_207 175094..175195 -
exon_17549_2exon_17549_2Tribonema minus UTEX_B_3156 exonContig_207 175877..176082 -
exon_17549_1exon_17549_1Tribonema minus UTEX_B_3156 exonContig_207 177200..177269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17549CDS_17549Tribonema minus UTEX_B_3156 CDSContig_207 177200..177269 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17549 ID=mRNA_17549|Name=jgi.p|Trimin1|180046|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_207:175094..177269- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCATCCGATAACGTGACTTACTCTGGGGGGCAAGAGGGCGTGCA
GGGAGGTTTTTACGGCTCAGGCGGCGCGCGCGCCAAGGCGCCCGGCAGCC
TGCACCACCGGCCCGAGGCGGTCGCGGCGCTGGAGGACATTGCGCGCCTC
AGCGCCATCATGACGGACGTCGGCAGCCTCGAGGCGGAGCTCGCGCGCTG
CGGCACGCTCAACGCGCACACCATTGAGATCAAGTCCACGCTCAAGAAGA
CGCTGTCGTCGCCGGCGATGATCGAGCTGCTCAACCGCCTGGAGATCAAC
GCGGAGCCGGTGTGGGGGCTCACGCAGGCGGAGCGCGAGATGGTGCGCAC
CGCGCGCAGGAAGGTCAACACCTGCTGA
back to top

protein sequence of jgi.p|Trimin1|180046

>Trimin1|180046|e_gw1.207.38.1 ID=Trimin1|180046|e_gw1.207.38.1|Name=jgi.p|Trimin1|180046|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
MGASDNVTYSGGQEGVQGGFYGSGGARAKAPGSLHHRPEAVAALEDIARL
SAIMTDVGSLEAELARCGTLNAHTIEIKSTLKKTLSSPAMIELLNRLEIN
AEPVWGLTQAEREMVRTARRKVNTC*
back to top

mRNA from alignment at Contig_207:175094..177269-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17549 ID=mRNA_17549|Name=jgi.p|Trimin1|180046|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2176bp|location=Sequence derived from alignment at Contig_207:175094..177269- (Tribonema minus UTEX_B_3156 )
ATGGGAGCATCCGATAACGTGACTTACTCTGGGGGGCAAGAGGGCGTGCA GGGAGGTTTTTACGGCTCAGGTGCGTGTCATGTTCACCAAGGTATTTCCG TTTGCTGCAAATGCCCGAGGCGTGCTTCCTGAAACAGAGAGGTCACACCA CCAGCTGAACATAGCGGAAATTTCAAGTTGTCATTCGTTACCACTTCGTG AGCGTGGTCCCCAACAACAGCAAATTCCGAACTGCGTTTTCGTCTCCCAT TACATCACCTGCGTGTCATCTGGAATACATTGTAGTGTGAGATGTATGCT TTAGCAAATCCCACGTGACATAGTACCATTCTGTTGTGTGCGGTGTTTAT GTCTCTCCCTGCTCTTTCAAATACAGCGAAAATTTAGTGTACCACACCGG TCTCGCTGTCACGGTGGGTTGCTCACATCACCCTCCTTGCTTGCTAGGTT CAGCTCATCACCGCTTCCCGGGTGCATGACTGAAAGCAAGCATTGGCAAC TGGCAGCGCCATCAGCTGTCGCACACTTCGTGATCATGCCTTGATGCGCA GCAGACCTTGCCTTGAACTTCAACATCGGCGCTCATCGCACCCGCAAGCA TTTGGAAGCACATGTAATGAGGCGGTCAGCTCTGCCAGCATGTGTGTTGC GCGTAGCTGGTTTTGGCGCAGCCTGGCAATCAAAGTTGTCAGATCACGCT CTCACGGCTGTGTCGGCATGCCCACGGGTGACGCCCCTGCTGACGCCGCC CGTCAGCAGGGGTGCTACTGGGCCATGCACACACGCGAGTGCGCCGCCGT TGCACGCCGACCCTCTACAGACATAATTTCTGCCAGGTCTGTACTGCAGC GGTGGCAGCAGCTGTCACTGAAACGCTGCGTGCCAGCTGCAGCCACCGGC GCTCCGCTCTACAGCCCTCAATTCTACTGCCGTCCATCGCCGCGTCCGCG CACACCGTGTCAGGAGTCTGTGACATGATGAGCACAGAAACGCACGAAAT GCCTCTGTTGCTGGTTCTTACACTGTTGCTTCATCCCTTTCAACAAGGTT CTACAATGTTGCTCCATACTCTGCTGTTGGCGTCAACGACGTTGCTGTCT CACTTTCTACAGAGTCCTACGCTGTCGCTCCACGCACACCTCCTCAATAG AGTACTTCAACTCGCTTTTTCACCTGCTCCCCCACAGGCGGCGCGCGCGC CAAGGCGCCCGGCAGCCTGCACCACCGGCCCGAGGCGGTCGCGGCGCTGG AGGACATTGCGCGCCTCAGCGCCATCATGACGGACGTCGGCAGCCTCGAG GCGGAGCTCGCGCGCTGCGGCACGCTCAACGCGCACACCATTGAGATCAA GTCCACGCTCAAGAAGACGCTGTCGTCGCCGGCGATGATCGAGGTGCGTG CGCCGCGCGCGCGCCCTGGTCGACGCGATGCGCGGTACGAGAACGCACGC ACAGTGCTGCGCTGCGAGAGTGTTGCCGTCCAGCCCCGTTACAGGCGGCT GCGCGCGCGCGCGAGGGCGCCGGAGTCTGGTGCAGCAGCGCTCAACTGTC ATGCCCTGTACACGCGCCCGCCACGCATGCGGCGCGGCACGCTGCTGCTG CCTAGCAGCGCCGCTGCGCCATGGACCGCGTGGCGGAGCTTGGCCAGTGC GTCGCGACGCGGGATGCGCGCCTTGATGCTGCAGTGGGGCTTCGCGTGCA CACATAATGCTAGCCTTGTGGGCCGCAAGTCGGACAGCGAGCAGTTTGAC AAAAATGAGCAGTGTTGCGCCGCACGGTCAATGCTTTTACTGAGCAGCAC CGGAGCGGGGGTCGGCGAAGGCCACGCGCGCAGTTGGCGCGCAGGCAGAA CTTGAATCACGTTTGCCTGCATCGCATGCACGGTCGCTGTCGCGCCGCCG TGCCTCACCATGACTCGCTCTGTAGCCATCAGATCACCTACTTGAGAAGC GCGATGACTCGCTGTATCCTTGTCAGTCGCTGACGCCCATACCTGCCTGC CCCCCGCGTGCACGGTCGCTCCGCCGCCGCCATCGCGCGCCGCCGACAAC GCGCACGCGCTCCCGCTGCGGCAGCTGCTCAACCGCCTGGAGATCAACGC GGAGCCGGTGTGGGGGCTCACGCAGGCGGAGCGCGAGATGGTGCGCACCG CGCGCAGGAAGGTCAACACCTGCTGA
back to top

Coding sequence (CDS) from alignment at Contig_207:175094..177269-

>mRNA_17549 ID=mRNA_17549|Name=jgi.p|Trimin1|180046|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_207:175094..177269- (Tribonema minus UTEX_B_3156 )
ATGGGAGCATCCGATAACGTGACTTACTCTGGGGGGCAAGAGGGCGTGCA
GGGAGGTTTTTACGGCTCAGGCGGCGCGCGCGCCAAGGCGCCCGGCAGCC
TGCACCACCGGCCCGAGGCGGTCGCGGCGCTGGAGGACATTGCGCGCCTC
AGCGCCATCATGACGGACGTCGGCAGCCTCGAGGCGGAGCTCGCGCGCTG
CGGCACGCTCAACGCGCACACCATTGAGATCAAGTCCACGCTCAAGAAGA
CGCTGTCGTCGCCGGCGATGATCGAGCTGCTCAACCGCCTGGAGATCAAC
GCGGAGCCGGTGTGGGGGCTCACGCAGGCGGAGCGCGAGATGGTGCGCAC
CGCGCGCAGGAAGGTCAACACCTGCTGA
back to top