mRNA_17505 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181351
Unique NamemRNA_17505
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|181351 vs. uniprot
Match: A0A836CQ25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ25_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.820e-42
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 1 
Query:    1 MECYSITSPPDSITSLPDSIGAFTALTTLVLRSCMQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMNARGLLSSFRCFATLTALCLHGSDSARFSAECIGALTALRSLNLGCSQLTKLPEGVCTLASLTDLSLW 738
            MECYSITSPPDSITSLPDSIGAFTALTTLVLRSCMQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMNARGLLSSFRCFATLTALCLHGSDSARFSAECIGALTALRSLNLGCSQLTKLPEGVCTLASLTDLSLW
Sbjct:    1 MECYSITSPPDSITSLPDSIGAFTALTTLVLRSCMQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMNARGLLSSFRCFATLTALCLHGSDSARFSAECIGALTALRSLNLGCSQLTKLPEGVCTLASLTDLSLW 246
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BLAST of jgi.p|Trimin1|181351 vs. uniprot
Match: A0A835YRQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRQ2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.840e-7
Identity = 37/71 (52.11%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  526 ASMNARGLLSSFRCFATLTALCLHGSDSARFSAECIGALTALRSLNLGCSQLTKLPEGVCTLASLTDLSLW 738
            AS++AR LL SFRCFA LT+L L G+D  RF A CI  LTALR+             GVC LA L  LSL+
Sbjct:   53 ASLDARRLLPSFRCFAVLTSLDLRGTDFTRFPAACIRDLTALRTXXXXXXXXXXXXXGVCALAELXRLSLY 123
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181351 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CQ25_9STRA4.820e-42100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRQ2_9STRA1.840e-752.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_253contigContig_253:113588..114697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181351|e_gw1.253.23.1
Hectar predicted targeting categoryother localisation
TranscriptId181673
TrackFilteredModels1
ProteinId181351
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181351gene_17505Tribonema minus UTEX_B_3156 geneContig_253 113588..114697 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17505_1exon_17505_1Tribonema minus UTEX_B_3156 exonContig_253 113588..114697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17505CDS_17505Tribonema minus UTEX_B_3156 CDSContig_253 113588..114697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181351Trimin1|181351|e_gw1.253.23.1Tribonema minus UTEX_B_3156 polypeptideContig_253 113588..114697 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17505 ID=mRNA_17505|Name=jgi.p|Trimin1|181351|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1110bp|location=Sequence derived from alignment at Contig_253:113588..114697+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTGTTACAGCATCACCAGCCCGCCGGACAGCATCACCAGCCTGCC
GGACAGCATTGGCGCATTCACTGCGCTGACGACGCTGGTGCTGCGCAGCT
GTATGCAGCTCACGGGCCTGCCAGACAGCATCGGCGGCATGACGCGGCTG
ACCGCACTGTCGCTTTGTGACTGCTCGCGGCTGACGCGCCTGCCGAACAG
CATCGGCGAGCTCACAGCGCTGGCGACATTGGACCTGAGCCAGTGCGCGG
CACTCGTTGATGTGCCTGAGACCATCGGCGGCTTGACCGCGCTGACGGCA
CTTGACTTTACCGCGTGCAGCGCGCTTCAACGCCTGCCAGACAGCATTGG
CAGTCTGGCAGCGCTGACAACGCTCGTGCTGTCTGAGTGCGGCAGCCTTG
AAGCACTGCCCGACGGCATCGCTCAATTGACGGCGCTTACGGCGCTGGAC
CTGGCACAGTGCAGCTCTCTGCAAAGCCTGCCAGCCAGCGTTGGGGCCTT
GCAGCAGTTGGAGACGCTCGGTTTAGCTTCCATGAATGCCAGAGGGCTGC
TGTCCAGCTTCCGCTGCTTCGCGACGCTGACGGCCCTGTGCCTGCACGGC
AGTGACTCTGCGCGCTTCTCAGCAGAGTGCATTGGCGCGCTGACGGCACT
GCGGTCTCTGAACCTAGGCTGTTCGCAGCTCACGAAGCTGCCAGAGGGCG
TCTGCACACTGGCGTCACTGACGGATCTCAGCCTGTGGGGCTGCAATCAG
CTAACATGCCTGCCGGATGCCATTTGCGAGCTGCGTGCGCTGACAGCGCT
CAACCTGAGCAGCTGCGGAGCGCTGGCGCGGCTGCCCGACAGCATCGGCG
GCCTGCACGCGCTGACGGCGCTGAAGCTGTTCGAATGCGACGCACTCGCG
GCCTTGCCAGAGTCCATCGGCGGCCTGCGCGCGCTGACGGACTTGGGCCT
GCGCAGGTGCGGCGCGCTCACGCGGCTTCCGGACAGCATCACCCGGCTGG
CGGCGCTTCAGCATCTTCACCTCAGCGACGGCTCGGTGCTGCGGGGCCTT
CCAGGCGTGCTCGTGCGCGTGCCGCACTGCATCGGCATCTACGCAGTCGG
GACGGCATGA
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protein sequence of jgi.p|Trimin1|181351

>Trimin1|181351|e_gw1.253.23.1 ID=Trimin1|181351|e_gw1.253.23.1|Name=jgi.p|Trimin1|181351|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=370bp
MECYSITSPPDSITSLPDSIGAFTALTTLVLRSCMQLTGLPDSIGGMTRL
TALSLCDCSRLTRLPNSIGELTALATLDLSQCAALVDVPETIGGLTALTA
LDFTACSALQRLPDSIGSLAALTTLVLSECGSLEALPDGIAQLTALTALD
LAQCSSLQSLPASVGALQQLETLGLASMNARGLLSSFRCFATLTALCLHG
SDSARFSAECIGALTALRSLNLGCSQLTKLPEGVCTLASLTDLSLWGCNQ
LTCLPDAICELRALTALNLSSCGALARLPDSIGGLHALTALKLFECDALA
ALPESIGGLRALTDLGLRRCGALTRLPDSITRLAALQHLHLSDGSVLRGL
PGVLVRVPHCIGIYAVGTA*
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mRNA from alignment at Contig_253:113588..114697+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17505 ID=mRNA_17505|Name=jgi.p|Trimin1|181351|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1110bp|location=Sequence derived from alignment at Contig_253:113588..114697+ (Tribonema minus UTEX_B_3156 )
ATGGAGTGTTACAGCATCACCAGCCCGCCGGACAGCATCACCAGCCTGCC
GGACAGCATTGGCGCATTCACTGCGCTGACGACGCTGGTGCTGCGCAGCT
GTATGCAGCTCACGGGCCTGCCAGACAGCATCGGCGGCATGACGCGGCTG
ACCGCACTGTCGCTTTGTGACTGCTCGCGGCTGACGCGCCTGCCGAACAG
CATCGGCGAGCTCACAGCGCTGGCGACATTGGACCTGAGCCAGTGCGCGG
CACTCGTTGATGTGCCTGAGACCATCGGCGGCTTGACCGCGCTGACGGCA
CTTGACTTTACCGCGTGCAGCGCGCTTCAACGCCTGCCAGACAGCATTGG
CAGTCTGGCAGCGCTGACAACGCTCGTGCTGTCTGAGTGCGGCAGCCTTG
AAGCACTGCCCGACGGCATCGCTCAATTGACGGCGCTTACGGCGCTGGAC
CTGGCACAGTGCAGCTCTCTGCAAAGCCTGCCAGCCAGCGTTGGGGCCTT
GCAGCAGTTGGAGACGCTCGGTTTAGCTTCCATGAATGCCAGAGGGCTGC
TGTCCAGCTTCCGCTGCTTCGCGACGCTGACGGCCCTGTGCCTGCACGGC
AGTGACTCTGCGCGCTTCTCAGCAGAGTGCATTGGCGCGCTGACGGCACT
GCGGTCTCTGAACCTAGGCTGTTCGCAGCTCACGAAGCTGCCAGAGGGCG
TCTGCACACTGGCGTCACTGACGGATCTCAGCCTGTGGGGCTGCAATCAG
CTAACATGCCTGCCGGATGCCATTTGCGAGCTGCGTGCGCTGACAGCGCT
CAACCTGAGCAGCTGCGGAGCGCTGGCGCGGCTGCCCGACAGCATCGGCG
GCCTGCACGCGCTGACGGCGCTGAAGCTGTTCGAATGCGACGCACTCGCG
GCCTTGCCAGAGTCCATCGGCGGCCTGCGCGCGCTGACGGACTTGGGCCT
GCGCAGGTGCGGCGCGCTCACGCGGCTTCCGGACAGCATCACCCGGCTGG
CGGCGCTTCAGCATCTTCACCTCAGCGACGGCTCGGTGCTGCGGGGCCTT
CCAGGCGTGCTCGTGCGCGTGCCGCACTGCATCGGCATCTACGCAGTCGG
GACGGCATGA
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Coding sequence (CDS) from alignment at Contig_253:113588..114697+

>mRNA_17505 ID=mRNA_17505|Name=jgi.p|Trimin1|181351|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1110bp|location=Sequence derived from alignment at Contig_253:113588..114697+ (Tribonema minus UTEX_B_3156 )
ATGGAGTGTTACAGCATCACCAGCCCGCCGGACAGCATCACCAGCCTGCC
GGACAGCATTGGCGCATTCACTGCGCTGACGACGCTGGTGCTGCGCAGCT
GTATGCAGCTCACGGGCCTGCCAGACAGCATCGGCGGCATGACGCGGCTG
ACCGCACTGTCGCTTTGTGACTGCTCGCGGCTGACGCGCCTGCCGAACAG
CATCGGCGAGCTCACAGCGCTGGCGACATTGGACCTGAGCCAGTGCGCGG
CACTCGTTGATGTGCCTGAGACCATCGGCGGCTTGACCGCGCTGACGGCA
CTTGACTTTACCGCGTGCAGCGCGCTTCAACGCCTGCCAGACAGCATTGG
CAGTCTGGCAGCGCTGACAACGCTCGTGCTGTCTGAGTGCGGCAGCCTTG
AAGCACTGCCCGACGGCATCGCTCAATTGACGGCGCTTACGGCGCTGGAC
CTGGCACAGTGCAGCTCTCTGCAAAGCCTGCCAGCCAGCGTTGGGGCCTT
GCAGCAGTTGGAGACGCTCGGTTTAGCTTCCATGAATGCCAGAGGGCTGC
TGTCCAGCTTCCGCTGCTTCGCGACGCTGACGGCCCTGTGCCTGCACGGC
AGTGACTCTGCGCGCTTCTCAGCAGAGTGCATTGGCGCGCTGACGGCACT
GCGGTCTCTGAACCTAGGCTGTTCGCAGCTCACGAAGCTGCCAGAGGGCG
TCTGCACACTGGCGTCACTGACGGATCTCAGCCTGTGGGGCTGCAATCAG
CTAACATGCCTGCCGGATGCCATTTGCGAGCTGCGTGCGCTGACAGCGCT
CAACCTGAGCAGCTGCGGAGCGCTGGCGCGGCTGCCCGACAGCATCGGCG
GCCTGCACGCGCTGACGGCGCTGAAGCTGTTCGAATGCGACGCACTCGCG
GCCTTGCCAGAGTCCATCGGCGGCCTGCGCGCGCTGACGGACTTGGGCCT
GCGCAGGTGCGGCGCGCTCACGCGGCTTCCGGACAGCATCACCCGGCTGG
CGGCGCTTCAGCATCTTCACCTCAGCGACGGCTCGGTGCTGCGGGGCCTT
CCAGGCGTGCTCGTGCGCGTGCCGCACTGCATCGGCATCTACGCAGTCGG
GACGGCATGA
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