mRNA_17494 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354470
Unique NamemRNA_17494
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Match: A0A836CG36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG36_9STRA)

HSP 1 Score: 619 bits (1596), Expect = 1.040e-222
Identity = 348/348 (100.00%), Postives = 348/348 (100.00%), Query Frame = 1
Query:    1 MAKPSEHSFTYPIFYAFLDLDELPLVFPWYLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDARETRASRAIAAAMAPLWALQARMGXXXXXXXXXXXXXXXXXCGGSVKGKSS 1044
            MAKPSEHSFTYPIFYAFLDLDELPLVFPWYLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDARETRASRAIAAAMAPLWALQARMGXXXXXXXXXXXXXXXXXCGGSVKGKSS
Sbjct:    1 MAKPSEHSFTYPIFYAFLDLDELPLVFPWYLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDARETRASRAIAAAMAPLWALQARMGXXXXXXXXXXXXXXXXXCGGSVKGKSS 348          
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Match: D8LIW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIW5_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 6.800e-80
Identity = 158/370 (42.70%), Postives = 197/370 (53.24%), Query Frame = 1
Query:    7 KPSEHSFTYPIFYAFLDLDELPLVFPWYLWPLATRFNIPALARFDAADHLK--------------------------DQPQQAGD---------------------------TERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGV--LWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDARETRASRAIAAAMAPLWALQ 951
            KP+ H F+YPIFY  +DLDEL + FPWY+WP+ +   +PAL+RF +ADHLK                          D    AGD                              SLADRVRD V   +G RP G V+LLTHL YLGYCFNPVSFYYC D     ++ VV EVSNTPW EMHCY L P  +GV V         ++D ++ + +NT+   T            +  RYRF K FHVSPFM M+HTYDW FTAP A+            L  +  +L+ G   ++F A+L L R+   +AAAL  H+ AYP YT  VQ  IH+QA RLW K+VPFF HP+  ET ASR +A  M PL+  Q
Sbjct:   64 KPTAHHFSYPIFYCLVDLDELDIAFPWYIWPVGSA-RLPALSRFRSADHLKGRGAATPVFAAXXXXXXXXXXXAAAGDPVDAAGDGVGRNEGGRGASGPSRARATAATSSPPLSSSLADRVRDIVEEATGARPTGRVQLLTHLAYLGYCFNPVSFYYCLDKTEREIETVVAEVSNTPWGEMHCYVLNPKTKGVQVI--------AKDKSNDNDNNTSKRGTK-----------EITRYRFEKDFHVSPFMSMKHTYDWKFTAPDASPGSG--------LMAQTTLLESGSGKVFFDAKLVLRRQPCFSAAALCWHMTAYPLYTVWVQVLIHYQAFRLWWKQVPFFPHPEGAETAASRLVAVVMTPLFNAQ 405          
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Match: A0A7S2U4A5_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U4A5_9EUKA)

HSP 1 Score: 201 bits (511), Expect = 1.130e-58
Identity = 131/312 (41.99%), Postives = 167/312 (53.53%), Query Frame = 1
Query:    7 KPSEHSFTYPIFYAFLDLDELPLVFPWYLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDARETRASRAIAAAMAPLW 942
            KP  H F Y +F   LDLD +      + WPL +  +  A+A F   DHLKD P+  G   +SLADRVR  V +R+G+ P G ++LLT+L+Y GYCFNPVSFYYC ++DG  L  VV EVSNTPW EMH Y L P  + V     +++   S+                            T RY F K FHVSPFMDMEH YD+SF +P+              L+V  +M K    WFSA L +     LT   LL  L  YP  T  +Q  IHW+AL+LWRK+VPF  HP+  ++ AS  I   MAP +
Sbjct:   25 KPCVHGFNYALFMFLLDLDAVHQALRGF-WPLCSTSSRWAVAYFSEDDHLKDIPKNKG--LQSLADRVRALVRSRTGKSPPGSIKLLTNLSYFGYCFNPVSFYYCLNSDG-TLYCVVAEVSNTPWGEMHTYVLHPDSKDV-----KSMREPSQPY--------------------------TKRYAFKKTFHVSPFMDMEHNYDFSFHSPQRI------------LQVNTSMFKDDQKWFSATLRM-NAMDLTWLNLLYLLLYYPFLTVYIQIIIHWEALKLWRKKVPFHPHPEGTQSSASIVIGWIMAPFF 288          
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Match: A0A7V2HF26_9BACT (DUF1365 domain-containing protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7V2HF26_9BACT)

HSP 1 Score: 196 bits (498), Expect = 1.760e-57
Identity = 130/298 (43.62%), Postives = 155/298 (52.01%), Query Frame = 1
Query:    7 KPSEHSFTYPIFYAFLDLDELPLVFPW-YLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDARE 897
            +P  H F Y +F  +LDL EL +VF   +LW  A+R   PALA F  ADHL       GD  + L   VRD V ARSG RP GP+RLLTHL Y GYC NPVSF+YC+  DG  L A+V EV+NTPW E HCY L+              SS++    H                          R+RF+KAFHVSPF  ME  YDW FT P               L +    L+ G   F A + L RRR LTAA+L   L  YPA TA V A I+WQALRLW +  PF  HP +R+
Sbjct:   16 QPVPHEFEYSLFLLYLDLSELDVVFRGRWLWS-ASR---PALAWFRRADHL-------GDPRQPLDGAVRDLVEARSGVRPRGPIRLLTHLRYFGYCMNPVSFFYCFREDGAELDAIVAEVNNTPWGERHCYVLSSR------------SSAATPPLH--------------------------RFRFSKAFHVSPFFPMEQEYDWRFTMP------------GPDLFIHMDNLESGRKVFDATMTL-RRRPLTAASLARALCRYPAMTAQVIAAIYWQALRLWLRGCPFHPHPSSRK 251          
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Match: A0A7S4DGV5_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DGV5_9EUKA)

HSP 1 Score: 194 bits (494), Expect = 8.110e-56
Identity = 124/312 (39.74%), Postives = 160/312 (51.28%), Query Frame = 1
Query:    7 KPSEHSFTYPIFYAFLDLDELPLVFPWYLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDARETRASRAIAAAMAPLW 942
            KP  H F Y +F   LDLD +      + WP  +  +  A+A F   DHLKD P+      R+LA+R+R  V +R+G+ P GP++LLT+L+Y GYCFNPVSFY+C + DG  L  VV EVSNTPW EMH Y L P  + V                                     G   T RY F K FHVSPFMDMEHTY++SF +P+              L++  +M K    WFSA L +     LT   L   L  YP  T  +Q  IHW+AL+LWRK+VPF  HP+  ++ AS  I   M P +
Sbjct:   54 KPCVHGFNYALFMFLLDLDTVHEALGGF-WPACSTSSPWAIAHFSEEDHLKDIPKTK--RHRNLAERIRALVLSRTGKSPSGPIKLLTNLSYFGYCFNPVSFYFCLNDDG-TLYCVVAEVSNTPWGEMHTYVLHPDSKDVK-------------------------------SMRKAGKPYTKRYAFEKTFHVSPFMDMEHTYEFSFHSPKET------------LQINTSMFKDEQKWFSATLRMNAME-LTWLNLAYLLLYYPFLTVYIQMIIHWEALKLWRKKVPFHPHPEGTKSSASVIIGWIMTPFF 317          
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Match: A0A6N8WVI8_9BACT (DUF1365 domain-containing protein n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6N8WVI8_9BACT)

HSP 1 Score: 186 bits (471), Expect = 1.860e-53
Identity = 123/298 (41.28%), Postives = 150/298 (50.34%), Query Frame = 1
Query:    7 KPSEHSFTYPIFYAFLDLDELPLVFPWYLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDARET 900
            +P  H+F YP+F  +LDLDEL  VF    +  A R   P LA FD  DHL     +AG  + +    VRD V + +G RP+GP+RLLTHL Y G+CFNPVSFYYC+DA GERL A+V EV+NTPW E H Y L  G                                   G + AG A   +RY   K FHVSPFMDM+  + W  T P               L V    L+ G   F A + L RR  +T   L   L  +P  TA V   IHW+ALRLW KR PF+ HP+ R T
Sbjct:   21 EPRAHAFEYPLFLVYLDLDELDTVFDGRWFWSARR---PNLAWFDRRDHLG---ARAGPLDAA----VRDLVASVTGRRPDGPIRLLTHLRYFGHCFNPVSFYYCFDATGERLDALVAEVNNTPWGEQHYYVLVGG-----------------------------------GAEPAGTA---IRYHAKKQFHVSPFMDMDLEHVWHTTLP------------GERLTVHIENLRDGARMFDASMRLERRE-ITGPRLAWALTRFPMMTAWVVGWIHWEALRLWLKRTPFYPHPNRRPT 257          
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Match: A0A532CYT7_9BACT (DUF1365 domain-containing protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532CYT7_9BACT)

HSP 1 Score: 184 bits (468), Expect = 6.040e-53
Identity = 118/299 (39.46%), Postives = 150/299 (50.17%), Query Frame = 1
Query:    7 KPSEHSFTYPIFYAFLDLDELPLVFP--WYLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDARE 897
             P  H FTY +F  ++DL+ELP VF   W+ W +  R N   LA F+  DH+       GD    L + +R  V AR+G RP GP+RLLTH  Y GY FNPVSFY+CYD  G+ +  +V E++NTPW E HCY L                                       Q+ A G     RYRF K FH+SPF+DM+  YDW FT P +             L +    L+ G  +F A + L RR  L+ ++L   LA YP  TA V   IHWQAL+LW K VPF AHP  R+
Sbjct:   16 SPVPHEFTYRLFMMYVDLEELPTVFKNRWF-WSV-DRTN---LASFNRVDHV-------GDPSLPLDESIRQLVEARTGSRPVGPIRLLTHFRYFGYVFNPVSFYFCYDRSGDSVDTIVAEITNTPWGEHHCYVLGTA------------------------------------QNRASGRRK--RYRFDKVFHISPFIDMDVAYDWRFTEPTSQ------------LAIHMEDLRDGRPFFDATMRLERRE-LSRSSLAHVLAQYPLMTAKVIGAIHWQALKLWIKGVPFLAHPKKRK 251          
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Match: A0A6B0X540_9BACT (DUF1365 domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B0X540_9BACT)

HSP 1 Score: 183 bits (464), Expect = 2.680e-52
Identity = 121/298 (40.60%), Postives = 144/298 (48.32%), Query Frame = 1
Query:   10 PSEHSFTYPIFYAFLDLDELPLVFPW-YLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVE---GVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDA 891
            P  H F Y +F  +LDL ELP +F   +LW  A     P +A F  ADHL       GD +  LAD VR  V   SG  P+GP+RLLTHL Y GY FNPVSFYYC+D     ++ VVGEV+NTPW E HCY L  G++   G H                                           Y+F+KAFHVSPFM M+  Y W FT PR              L V     + G   F A L L RRR ++A AL   L  YP  T  V   IHWQAL+LW KR PF+ HP +
Sbjct:   19 PVAHIFEYRLFMMYLDLAELPSLFDGRWLWSAAR----PNVAYFRRADHL-------GDPQHPLADCVRQLVKDESGRYPDGPIRLLTHLRYGGYGFNPVSFYYCFDRTDRSVETVVGEVNNTPWGEQHCYVLHQGLDRGCGAHKC-----------------------------------------YQFSKAFHVSPFMAMQQAYTWRFTTPRRT------------LAVHMDNWQDGSHLFDATLVL-RRREISATALTRVLVQYPLITTKVIGAIHWQALKLWLKRCPFYPHPKS 251          
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Match: UPI0008346118 (DUF1365 domain-containing protein n=1 Tax=Halofilum ochraceum TaxID=1611323 RepID=UPI0008346118)

HSP 1 Score: 182 bits (462), Expect = 3.050e-52
Identity = 116/293 (39.59%), Postives = 144/293 (49.15%), Query Frame = 1
Query:   10 PSEHSFTYPIFYAFLDLDELPLVFPW-YLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHP 885
            P  H F+Y +F  ++DL EL  VF   +LW +      P + RFD  DHL       G  +R L + VRD V  R+G RP GP+RLLTH  Y G+CFNPVSFYYC+DA    L+ +V EV NTPW E HCY L    +G H               H                          R+RF KAFHVSPF+DM++ YDW FT P               + +RN   + G   F A L+L  RR L    +   LA +P  T  V A I+WQALRLW +  PFF HP
Sbjct:   18 PRPHGFSYRVFMLYIDLGELDRVFRGRWLWSVER----PNIVRFDRRDHL-------GPHDRPLDENVRDLVQERTGARPSGPIRLLTHPRYFGFCFNPVSFYYCFDAADRELETIVAEVHNTPWGERHCYVLPVDGDGTH---------------H--------------------------RFRFRKAFHVSPFLDMDYDYDWRFTTP----------GDRLTVHMRNE--RDGERDFDASLSL-ERRPLDGPNMARALARHPFMTGKVVAAIYWQALRLWIRGTPFFPHP 245          
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Match: A0A6L7QK18_9BACT (DUF1365 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6L7QK18_9BACT)

HSP 1 Score: 182 bits (462), Expect = 5.330e-52
Identity = 120/295 (40.68%), Postives = 144/295 (48.81%), Query Frame = 1
Query:   10 PSEHSFTYPIFYAFLDLDELPLVFPW-YLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAPRAAXXXXXXXXXXXXLRVRNAMLKGGVLWFSARLALPRRRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDA 891
            P  H F Y +F  +LDL ELP +F   +LW  A     P +A F  ADHL       GD +  LAD VR  V   SG  P+GP+RLLTHL Y GY FNPVSFYYC+D     ++ VVGEV+NTPW E HCY L  G++                                       G      Y+F+KAFHVSPFM M+  Y W FT PR              L V+    + G   F A L L RRR ++A AL   L  YP  T  V   IHWQAL+LW KR PF+ HP +
Sbjct:   19 PVAHVFEYRLFMMYLDLAELPSLFDGRWLWSAAR----PNVAYFRRADHL-------GDPQHPLADCVRQLVKDESGRYPDGPIRLLTHLRYGGYGFNPVSFYYCFDRTDRSVETVVGEVNNTPWGEQHCYVLHQGLDR--------------------------------------GCGARKCYQFSKAFHVSPFMAMQQDYTWRFTTPRHT------------LSVQMDNWQDGGHLFDATLVL-RRREISATALTRVLVQYPLITTKVIGAIHWQALKLWLKRCPFYPHPKS 251          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354470 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG36_9STRA1.040e-222100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LIW5_ECTSI6.800e-8042.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2U4A5_9EUKA1.130e-5841.99Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7V2HF26_9BACT1.760e-5743.62DUF1365 domain-containing protein n=1 Tax=Bryobact... [more]
A0A7S4DGV5_9EUKA8.110e-5639.74Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A6N8WVI8_9BACT1.860e-5341.28DUF1365 domain-containing protein n=3 Tax=Acidobac... [more]
A0A532CYT7_9BACT6.040e-5339.46DUF1365 domain-containing protein n=1 Tax=Nitrospi... [more]
A0A6B0X540_9BACT2.680e-5240.60DUF1365 domain-containing protein n=2 Tax=Gemmatim... [more]
UPI00083461183.050e-5239.59DUF1365 domain-containing protein n=1 Tax=Halofilu... [more]
A0A6L7QK18_9BACT5.330e-5240.68DUF1365 domain-containing protein n=1 Tax=Gemmatim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_253contigContig_253:45092..47177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354470|estExt_Genemark1.C_Ctg_2530009
DescriptionProtein of unknown function (DUF1365)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsCOG3496@1|root,2QVK6@2759|Eukaryota
Evalue1.11e-80
Seed ortholog2880.D8LIW5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1365
Ec32 orthologEc-20_001810.1
TranscriptId354792
TrackFilteredModels1
ProteinId354470
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354470gene_17494Tribonema minus UTEX_B_3156 geneContig_253 45092..47177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354470Trimin1|354470|estExt_Genemark1.C_Ctg_2530009Tribonema minus UTEX_B_3156 polypeptideContig_253 45092..47177 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17494_4exon_17494_4Tribonema minus UTEX_B_3156 exonContig_253 45092..45775 -
exon_17494_3exon_17494_3Tribonema minus UTEX_B_3156 exonContig_253 46296..46484 -
exon_17494_2exon_17494_2Tribonema minus UTEX_B_3156 exonContig_253 46937..47092 -
exon_17494_1exon_17494_1Tribonema minus UTEX_B_3156 exonContig_253 47160..47177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17494CDS_17494Tribonema minus UTEX_B_3156 CDSContig_253 47160..47177 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17494 ID=mRNA_17494|Name=jgi.p|Trimin1|354470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1047bp|location=Sequence derived from alignment at Contig_253:45092..47177- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAACCCAGCGAACACTCTTTCACATACCCAATCTTCTACGCATT
CCTGGATCTGGACGAGCTGCCGCTGGTGTTTCCCTGGTACCTATGGCCAC
TCGCCACAAGGTTCAACATCCCGGCCCTTGCTCGATTCGACGCCGCGGAT
CACCTCAAGGACCAGCCTCAGCAGGCTGGTGACACCGAGCGATCGCTAGC
GGACCGCGTGCGCGACTTTGTGGGCGCGCGCTCGGGAGAGAGGCCAGAGG
GACCTGTGCGGCTGCTGACGCACCTGACGTACCTGGGCTACTGCTTCAAC
CCGGTGTCCTTCTACTACTGCTACGACGCAGATGGCGAGCGGCTGCAGGC
GGTCGTAGGCGAGGTCAGCAACACGCCCTGGCTGGAGATGCACTGCTACG
CGCTGGCGCCGGGCGTGGAAGGCGTCCATGTAACTACTGGCGAAACTGTC
AGCAGCAGCAGCGAGGACACAGCCCACACCAGCGCCAGCAACACGGCTGC
CAACAGCACAGTCGCGGAGGGCCAAGATGCCGCCGGCGGTGCTGCCGACA
CGGTGCGCTACCGCTTTGCCAAGGCGTTCCACGTGTCGCCCTTCATGGAC
ATGGAGCACACGTACGACTGGAGCTTCACGGCGCCGCGCGCCGCCGCGGC
AGCGGACGGCGCCGCGCCGCCGCCGCCGCCGCTGCGCGTCCGCAACGCCA
TGCTCAAGGGCGGCGTGCTGTGGTTCTCGGCGCGCCTCGCGCTGCCGCGG
CGGCGCGCTCTCACGGCGGCGGCGCTGCTCGCGCACCTCGCGGCGTACCC
CGCGTACACGGCGGCGGTGCAGGCGCGCATCCACTGGCAGGCGCTGCGGC
TGTGGCGCAAGCGCGTGCCGTTCTTTGCGCACCCGGACGCGAGGGAGACG
CGCGCGTCGCGCGCCATCGCGGCCGCCATGGCGCCGCTGTGGGCGCTGCA
GGCGCGCATGGGCGGCGGCGGCGGCAACGCGGCAGCGGCAGCGGCGGCGG
CGGCGGCGGCGGCGTGCGGCGGCAGCGTCAAGGGCAAGAGCTCGTGA
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protein sequence of jgi.p|Trimin1|354470

>Trimin1|354470|estExt_Genemark1.C_Ctg_2530009 ID=Trimin1|354470|estExt_Genemark1.C_Ctg_2530009|Name=jgi.p|Trimin1|354470|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=349bp
MAKPSEHSFTYPIFYAFLDLDELPLVFPWYLWPLATRFNIPALARFDAAD
HLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFN
PVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETV
SSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMD
MEHTYDWSFTAPRAAAAADGAAPPPPPLRVRNAMLKGGVLWFSARLALPR
RRALTAAALLAHLAAYPAYTAAVQARIHWQALRLWRKRVPFFAHPDARET
RASRAIAAAMAPLWALQARMGGGGGNAAAAAAAAAAAACGGSVKGKSS*
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mRNA from alignment at Contig_253:45092..47177-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17494 ID=mRNA_17494|Name=jgi.p|Trimin1|354470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2086bp|location=Sequence derived from alignment at Contig_253:45092..47177- (Tribonema minus UTEX_B_3156 )
ATGGCGAAACCCAGCGAAGTATGCCAAACAATGGAGCGCACTGTACTCTG GCAGGGTCTGGCACAACCGCTTTCAACCCACCGAGCACTCTTTCACATAC CCAATCTTCTACGCATTCCTGGATCTGGACGAGCTGCCGCTGGTGTTTCC CTGGTACCTATGGCCACTCGCCACAAGGTTCAACATCCCGGCCCTTGCTC GATTCGACGCCGCGGATCACCTCAAGGACCAGCCTCAGCAGGTGATACAG CGCTCTCTTGATAAGAGGCCAGAAAGCAGTGAAGAGGCGCGCGACATCTG GGGCTCGTGAGCGGTGATGGCAATGGCTTGCTGCTGCTTTCAGTATCAAT CGCAGCGCATAGCCGCGGCGTTGACAGATGTGCAAGGTCATCCGCGCACT GCTGCGCAGTCCCCAAGAAGTTTTCTCTGACTTCTTCCCCAGACTATTTC AGCTGCCGACAAACCATGGAAGTCCTTTCGTTTCCTGCCCCGCAAGTCGC ATCCCGGTCGGTTGCAACACTGGAAATCAGTGTGCGCAATGCGTGCCAAT GCGTGCCGCGCTTGTGTCACCCATGTGCCGACAGCGCCAACTTCCAAAGG TCATGGTGATACTTCACTCTCCAGGCCCGCAGTCGCCACACTGACTCTAG TCTGTCGTGACTCTACTCTGCACTGGCATGTGACTCTCTACAGGCTGGTG ACACCGAGCGATCGCTAGCGGACCGCGTGCGCGACTTTGTGGGCGCGCGC TCGGGAGAGAGGCCAGAGGGACCTGTGCGGCTGCTGACGCACCTGACGTA CCTGGGCTACTGCTTCAACCCGGTGTCCTTCTACTACTGCTACGACGCAG ATGGCGAGCGGCTGCAGGCGGTCGTAGGCGAGGTGAGGGCGCAGCCTGCG CGCCGCCGCGCAGCCCCTGTCGCACGCCCCATCGCCGCTGCAGACGAACT AGTCTGGGGTTGAGGTCAGGGTCAGGAGAAGGGCGGCATCAGGTATCAAG TCTATGGATTGCAGTCACTCCAATCCTTCCACCCCACGGCTCGTGTGCAT CCACATACGGGGGGTCGGCGTTGCGGTGGAGGGGCTGTTGATGCAGCCAT GCCAAGGGCGTGCGCTTGCGCGCATGGCTGTCGCAAGGGCACATGCAGTA ATGACCCTCACTGATGGTGTACATCCAACATTGCTTCGTGAGCATGCCAC AGCAGCAAAAGCCACTGCATTGGTAGCTGCCCATCTGCAGGTCTCTCATG GCCAGCATGCGAGGAAGGAGTGCCAAATCTGCTCCAGTGGTCGTTCATGA GTATGCCATCTACAAGAGCGAGCAAGCGTATGATGCACCCAGTGCAGTCC GCCGCCACTGGAAACTTCAAACCCCGCATGCCCATTCCTGCGGTTCGCGC AGGTCAGCAACACGCCCTGGCTGGAGATGCACTGCTACGCGCTGGCGCCG GGCGTGGAAGGCGTCCATGTAACTACTGGCGAAACTGTCAGCAGCAGCAG CGAGGACACAGCCCACACCAGCGCCAGCAACACGGCTGCCAACAGCACAG TCGCGGAGGGCCAAGATGCCGCCGGCGGTGCTGCCGACACGGTGCGCTAC CGCTTTGCCAAGGCGTTCCACGTGTCGCCCTTCATGGACATGGAGCACAC GTACGACTGGAGCTTCACGGCGCCGCGCGCCGCCGCGGCAGCGGACGGCG CCGCGCCGCCGCCGCCGCCGCTGCGCGTCCGCAACGCCATGCTCAAGGGC GGCGTGCTGTGGTTCTCGGCGCGCCTCGCGCTGCCGCGGCGGCGCGCTCT CACGGCGGCGGCGCTGCTCGCGCACCTCGCGGCGTACCCCGCGTACACGG CGGCGGTGCAGGCGCGCATCCACTGGCAGGCGCTGCGGCTGTGGCGCAAG CGCGTGCCGTTCTTTGCGCACCCGGACGCGAGGGAGACGCGCGCGTCGCG CGCCATCGCGGCCGCCATGGCGCCGCTGTGGGCGCTGCAGGCGCGCATGG GCGGCGGCGGCGGCAACGCGGCAGCGGCAGCGGCGGCGGCGGCGGCGGCG GCGTGCGGCGGCAGCGTCAAGGGCAAGAGCTCGTGA
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Coding sequence (CDS) from alignment at Contig_253:45092..47177-

>mRNA_17494 ID=mRNA_17494|Name=jgi.p|Trimin1|354470|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1047bp|location=Sequence derived from alignment at Contig_253:45092..47177- (Tribonema minus UTEX_B_3156 )
ATGGCGAAACCCAGCGAACACTCTTTCACATACCCAATCTTCTACGCATT
CCTGGATCTGGACGAGCTGCCGCTGGTGTTTCCCTGGTACCTATGGCCAC
TCGCCACAAGGTTCAACATCCCGGCCCTTGCTCGATTCGACGCCGCGGAT
CACCTCAAGGACCAGCCTCAGCAGGCTGGTGACACCGAGCGATCGCTAGC
GGACCGCGTGCGCGACTTTGTGGGCGCGCGCTCGGGAGAGAGGCCAGAGG
GACCTGTGCGGCTGCTGACGCACCTGACGTACCTGGGCTACTGCTTCAAC
CCGGTGTCCTTCTACTACTGCTACGACGCAGATGGCGAGCGGCTGCAGGC
GGTCGTAGGCGAGGTCAGCAACACGCCCTGGCTGGAGATGCACTGCTACG
CGCTGGCGCCGGGCGTGGAAGGCGTCCATGTAACTACTGGCGAAACTGTC
AGCAGCAGCAGCGAGGACACAGCCCACACCAGCGCCAGCAACACGGCTGC
CAACAGCACAGTCGCGGAGGGCCAAGATGCCGCCGGCGGTGCTGCCGACA
CGGTGCGCTACCGCTTTGCCAAGGCGTTCCACGTGTCGCCCTTCATGGAC
ATGGAGCACACGTACGACTGGAGCTTCACGGCGCCGCGCGCCGCCGCGGC
AGCGGACGGCGCCGCGCCGCCGCCGCCGCCGCTGCGCGTCCGCAACGCCA
TGCTCAAGGGCGGCGTGCTGTGGTTCTCGGCGCGCCTCGCGCTGCCGCGG
CGGCGCGCTCTCACGGCGGCGGCGCTGCTCGCGCACCTCGCGGCGTACCC
CGCGTACACGGCGGCGGTGCAGGCGCGCATCCACTGGCAGGCGCTGCGGC
TGTGGCGCAAGCGCGTGCCGTTCTTTGCGCACCCGGACGCGAGGGAGACG
CGCGCGTCGCGCGCCATCGCGGCCGCCATGGCGCCGCTGTGGGCGCTGCA
GGCGCGCATGGGCGGCGGCGGCGGCAACGCGGCAGCGGCAGCGGCGGCGG
CGGCGGCGGCGGCGTGCGGCGGCAGCGTCAAGGGCAAGAGCTCGTGA
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