mRNA_17453 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180645
Unique NamemRNA_17453
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180645 vs. uniprot
Match: A0A835Z0W0_9STRA (Putative cobalamin synthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W0_9STRA)

HSP 1 Score: 250 bits (638), Expect = 4.270e-84
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 MNEVNLYAAYERRQHEAAARRPVLPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCCDTSLNTAFKGQVRQFRGHSAPLSMETNHKIVEL 372
            MNEVNLYAAYERRQHEAAARRPVLPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCCDTSLNTAFKGQVRQFRGHSAPLSMETNHKIVEL
Sbjct:    1 MNEVNLYAAYERRQHEAAARRPVLPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCCDTSLNTAFKGQVRQFRGHSAPLSMETNHKIVEL 124
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BLAST of jgi.p|Trimin1|180645 vs. uniprot
Match: D8LTM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM2_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 7.770e-30
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = 1 
Query:    4 NEVNLYAAYERRQHEAAARRPVLPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCCDTSLNTAFKGQVRQ 315
            +E NLY  YE+RQ++A  +RPVLPVTIVTGFLGAGKTTLL+++L ++ NL++AA+VN++G VDHDG VLE  +      V KL GGC CC TSL    + +V +
Sbjct:    5 SEANLYRMYEKRQYDATRQRPVLPVTIVTGFLGAGKTTLLRKILRSKHNLRIAAVVNEYGTVDHDGGVLE--RDGQTDSVDKLMGGCVCCHTSLGGQLEEKVSE 106
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BLAST of jgi.p|Trimin1|180645 vs. uniprot
Match: A0A6H5JSJ2_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.150e-29
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = 1 
Query:    4 NEVNLYAAYERRQHEAAARRPVLPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCCDTSLNTAFKGQVRQ 315
            +E NLY  YE+RQ++A  +RPVLPVTIVTGFLGAGKTTLL+++L ++ NL++AA+VN++G VDHDG VLE  +      V KL GGC CC TSL    + +V +
Sbjct:    5 SEANLYRMYEKRQYDATRQRPVLPVTIVTGFLGAGKTTLLRKILRSKHNLRIAAVVNEYGTVDHDGGVLE--RDGQTDSVDKLMGGCVCCHTSLGGELEEKVSE 106
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BLAST of jgi.p|Trimin1|180645 vs. uniprot
Match: A0A1Y1HXZ0_KLENI (CobW C-terminal domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXZ0_KLENI)

HSP 1 Score: 82.0 bits (201), Expect = 1.060e-15
Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 1 
Query:   25 AYERRQHEAAARRPVLPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGV---QKLSGGCFCCDTS--LNTAFKGQVRQFRGHSAPLSMETN---------HKIVEL 372
            A ERR   ++     +P T+VTGFLG+GKTTL++ +L+++ +L++A +VN+FG+ D DG +L   Q +   G+   + LS GC CCDTS     A +G +    G    L +ET+         H ++EL
Sbjct:    4 ALERRIFASSPAGRAIPCTLVTGFLGSGKTTLVRHILASKGDLRIAVLVNEFGQADIDGALLNTTQTSASLGIAPPRALSHGCACCDTSEEFRAAVRGMLESQDGFDY-LVVETSGLSDPQPMAHALMEL 132
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BLAST of jgi.p|Trimin1|180645 vs. uniprot
Match: A0A2V3INC5_9FLOR (COBW domain-containing protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INC5_9FLOR)

HSP 1 Score: 82.0 bits (201), Expect = 1.130e-15
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   70 LPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCCDTSLNTAFKGQV 309
            LPVTIVTGFLG+GKTTLL  +L     LK+A +VN+FGE+D D +++E      K  V +L+ GC CC  S+N +F   V
Sbjct:  737 LPVTIVTGFLGSGKTTLLNYILKEDHGLKIAVLVNEFGEIDIDNQLVEKGDWTSKDEVMELANGCICC--SINDSFVNAV 814
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BLAST of jgi.p|Trimin1|180645 vs. uniprot
Match: UPI001A035C3D (GTP-binding protein n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI001A035C3D)

HSP 1 Score: 80.9 bits (198), Expect = 1.960e-15
Identity = 44/105 (41.90%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:   10 VNLYAAYERRQHEAAARRPVLPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCC---DTSLNTAFKGQVRQ 315
            VNL A ++ +      +R  +PVTI+TGFLG+GKTTLL  +LS R+NLKVA +VN+FG++D D ++L +    I   + +LS GC CC   D+ ++  +    R+
Sbjct:    2 VNLSAEHQEQTTLQLPKRG-MPVTIITGFLGSGKTTLLNHILSNRQNLKVAVLVNEFGDIDIDSQLLVS----IDEDMVQLSNGCICCTINDSLVDAVYDVMARE 101
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BLAST of jgi.p|Trimin1|180645 vs. uniprot
Match: A0A165AZY3_9SYNE (Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family (Fragment) n=1 Tax=Candidatus Synechococcus spongiarum TaxID=431041 RepID=A0A165AZY3_9SYNE)

HSP 1 Score: 75.9 bits (185), Expect = 1.970e-15
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   70 LPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCC 273
            LPVTI+TGFLGAGKTTLL  +LS ++ LKVA +VN+FGE+  D  ++ A   A+     +LS GC CC
Sbjct:   16 LPVTILTGFLGAGKTTLLNHILSNQQGLKVAVLVNEFGEIGIDNDLIVATSDAMV----ELSNGCICC 79
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BLAST of jgi.p|Trimin1|180645 vs. uniprot
Match: L8MW09_9CYAN (Cobalamin synthesis protein P47K n=2 Tax=Pseudanabaena TaxID=1152 RepID=L8MW09_9CYAN)

HSP 1 Score: 80.1 bits (196), Expect = 2.700e-15
Identity = 37/68 (54.41%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   70 LPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCC 273
            +PVTIVTGFLG+GKTTLL ++L  R++LKVA +VN+FG+++ DG++L      I+ G+ +LS GC CC
Sbjct:   13 MPVTIVTGFLGSGKTTLLNQILKNRQDLKVAVLVNEFGDINIDGQLLVN----IEDGMMELSNGCICC 76
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BLAST of jgi.p|Trimin1|180645 vs. uniprot
Match: A0A352JIA6_9CYAN (Cobalamin biosynthesis protein CobW (Fragment) n=1 Tax=Pseudanabaena sp. TaxID=1153 RepID=A0A352JIA6_9CYAN)

HSP 1 Score: 79.0 bits (193), Expect = 3.170e-15
Identity = 37/68 (54.41%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   70 LPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCC 273
            +PVTIVTGFLG+GKTTLL ++L  R++LKVA +VN+FG+++ DG++L      I+ G+ +LS GC CC
Sbjct:   13 MPVTIVTGFLGSGKTTLLNQILKNRQDLKVAVLVNEFGDINIDGQLLID----IEDGMVELSNGCICC 76
[Close]
BLAST of jgi.p|Trimin1|180645 vs. uniprot
Match: M2XEC4_GALSU (CobW C-terminal domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XEC4_GALSU)

HSP 1 Score: 80.5 bits (197), Expect = 3.890e-15
Identity = 43/101 (42.57%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   70 LPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQ-KLSGGCFCCDTSLNTAFKGQVRQFRGHSAPLSMETNHKIVE 369
            LP+TI+TGFLG+GKTTLL  +LS   ++K+A +VNDFGE+D D +++E +    KG +  +LS GC CC+  +N +F   ++  +G       E ++ IVE
Sbjct:  793 LPITILTGFLGSGKTTLLNYILSQSGSMKIAVVVNDFGELDIDSRLVEKSIWKDKGNLLVELSNGCICCN--VNGSFVESLQHLKGQEK----EFDYVIVE 887
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180645 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0W0_9STRA4.270e-84100.00Putative cobalamin synthesis protein n=1 Tax=Tribo... [more]
D8LTM2_ECTSI7.770e-3055.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSJ2_9PHAE2.150e-2955.77CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A1Y1HXZ0_KLENI1.060e-1536.92CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A2V3INC5_9FLOR1.130e-1550.00COBW domain-containing protein 1 n=1 Tax=Gracilari... [more]
UPI001A035C3D1.960e-1541.90GTP-binding protein n=1 Tax=filamentous cyanobacte... [more]
A0A165AZY3_9SYNE1.970e-1554.41Putative metal chaperone, involved in Zn homeostas... [more]
L8MW09_9CYAN2.700e-1554.41Cobalamin synthesis protein P47K n=2 Tax=Pseudanab... [more]
A0A352JIA6_9CYAN3.170e-1554.41Cobalamin biosynthesis protein CobW (Fragment) n=1... [more]
M2XEC4_GALSU3.890e-1542.57CobW C-terminal domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_222contigContig_222:137528..138234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180645|e_gw1.222.28.1
DescriptionATP binding
COG categoryF
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0523@1|root,KOG2743@2759|Eukaryota
Evalue1.27e-30
Seed ortholog2880.D8LTM2
Hectar predicted targeting categoryother localisation
TranscriptId180967
TrackFilteredModels1
ProteinId180645
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180645gene_17453Tribonema minus UTEX_B_3156 geneContig_222 137528..138234 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17453_1exon_17453_1Tribonema minus UTEX_B_3156 exonContig_222 137528..137713 +
exon_17453_2exon_17453_2Tribonema minus UTEX_B_3156 exonContig_222 138046..138234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17453CDS_17453Tribonema minus UTEX_B_3156 CDSContig_222 137528..137713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180645Trimin1|180645|e_gw1.222.28.1Tribonema minus UTEX_B_3156 polypeptideContig_222 137528..138234 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17453 ID=mRNA_17453|Name=jgi.p|Trimin1|180645|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_222:137528..138234+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGAGGTCAATCTGTACGCTGCATATGAGCGTCGTCAACATGAAGC
CGCAGCGAGGAGGCCTGTCCTGCCCGTTACCATAGTGACTGGTTTTCTAG
GCGCAGGGAAGACCACGTTGTTACAGAGGGTACTGTCAACACGGCGCAAT
CTGAAAGTGGCTGCTATCGTCAATGACTTTGGCGAGGTGGACCATGATGG
GAAGGTGCTGGAAGCGGCTCAGGGGGCCATCAAGGGGGGGGTGCAGAAGC
TGTCGGGGGGGTGCTTCTGCTGCGACACCTCCCTCAACACCGCTTTCAAG
GGCCAGGTGCGGCAGTTCCGTGGCCACAGTGCACCACTGTCAATGGAAAC
AAACCACAAGATCGTAGAGCTCTAG
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protein sequence of jgi.p|Trimin1|180645

>Trimin1|180645|e_gw1.222.28.1 ID=Trimin1|180645|e_gw1.222.28.1|Name=jgi.p|Trimin1|180645|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
MNEVNLYAAYERRQHEAAARRPVLPVTIVTGFLGAGKTTLLQRVLSTRRN
LKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCCDTSLNTAFK
GQVRQFRGHSAPLSMETNHKIVEL*
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mRNA from alignment at Contig_222:137528..138234+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17453 ID=mRNA_17453|Name=jgi.p|Trimin1|180645|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=707bp|location=Sequence derived from alignment at Contig_222:137528..138234+ (Tribonema minus UTEX_B_3156 )
ATGAACGAGGTCAATCTGTACGCTGCATATGAGCGTCGTCAACATGAAGC
CGCAGCGAGGAGGCCTGTCCTGCCCGTTACCATAGTGACTGGTTTTCTAG
GCGCAGGGAAGACCACGTTGTTACAGAGGGTACTGTCAACACGGCGCAAT
CTGAAAGTGGCTGCTATCGTCAATGACTTTGGCGAGGTGAGAGGCTAAGT
AGTGCTGCTCACAGATATCTCGAGCTTACGCATAGTGTAGACCAACCCGC
CTACTGAATTAGATGCTTGCAAGTGAACTCCGACATCTACGACAAGTGTA
GTTGCTCCATCAGACCATCCGGATTTCTTCTCGTGGGTCCGTGTTGACAA
AGCTCTGAGCTCTGCTAGCACACAGCGCCGCCTCAGCGGTAGATGCTCTG
TCTGTTTGCGGAGACGTTATACGCCGCGTCTCCCTGACCTGCTGCTCTAG
CACGCGGCATGACTGCAATGTACTCAAGGCACCTTCATCGAACGGCACCC
GCATTTGCCATTGCACAGGTGGACCATGATGGGAAGGTGCTGGAAGCGGC
TCAGGGGGCCATCAAGGGGGGGGTGCAGAAGCTGTCGGGGGGGTGCTTCT
GCTGCGACACCTCCCTCAACACCGCTTTCAAGGGCCAGGTGCGGCAGTTC
CGTGGCCACAGTGCACCACTGTCAATGGAAACAAACCACAAGATCGTAGA
GCTCTAG
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Coding sequence (CDS) from alignment at Contig_222:137528..138234+

>mRNA_17453 ID=mRNA_17453|Name=jgi.p|Trimin1|180645|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_222:137528..138234+ (Tribonema minus UTEX_B_3156 )
ATGAACGAGGTCAATCTGTACGCTGCATATGAGCGTCGTCAACATGAAGC
CGCAGCGAGGAGGCCTGTCCTGCCCGTTACCATAGTGACTGGTTTTCTAG
GCGCAGGGAAGACCACGTTGTTACAGAGGGTACTGTCAACACGGCGCAAT
CTGAAAGTGGCTGCTATCGTCAATGACTTTGGCGAGGTGGACCATGATGG
GAAGGTGCTGGAAGCGGCTCAGGGGGCCATCAAGGGGGGGGTGCAGAAGC
TGTCGGGGGGGTGCTTCTGCTGCGACACCTCCCTCAACACCGCTTTCAAG
GGCCAGGTGCGGCAGTTCCGTGGCCACAGTGCACCACTGTCAATGGAAAC
AAACCACAAGATCGTAGAGCTCTAG
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