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Homology
BLAST of jgi.p|Trimin1|354069 vs. uniprot
Match: A0A835Z244_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z244_9STRA) HSP 1 Score: 775 bits (2000), Expect = 4.620e-276 Identity = 595/595 (100.00%), Postives = 595/595 (100.00%), Query Frame = 1
Query: 1 MREYPEDLHLQADVLDQILKLIPTRSRDLVEQGLCQALVNVMSSHSSAVRVQYLALKAMAKCLGCLPDCKAAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPFAEDNNGKASLGAAACASVAVAVKRHAGVHDIALLGLRLANALACGGAEAIGALGDAGACAAVVAAMRQFPQSAGVQAEAARTVELLGARAVYRSLIARETGCEALAQALRNASRXXXXXXXXXXXXXDARRALLRALRLMARDDRSRARLAACGACEAAVAALLASPRDAAAQASGWAAAASLAYRCRGXXXXXXXXXXXXXXGCAKLRSAGVCAAFAAALRGFPDDPYIQMDALLTAATLVGSGADADAAATAKLLLTVGACAAVVRTMGAYSAGSNRPNAQQIQLRSVRVLAVLARAAAVALPAEAXXXXXXXXXXXXDAAEEXXXXXXXXXXXXXXSTAAGGDAXXXXXXXXXXXDLRXXXXXXXXXXXXAARAYPDSPDVREACALFRRAVSGEERAALDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAGVAMDDGADALDVAGLDAQLHDAGLGHVVAAAAAPRPPPELIPRGSGR 1785
MREYPEDLHLQADVLDQILKLIPTRSRDLVEQGLCQALVNVMSSHSSAVRVQYLALKAMAKCLGCLPDCKAAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPFAEDNNGKASLGAAACASVAVAVKRHAGVHDIALLGLRLANALACGGAEAIGALGDAGACAAVVAAMRQFPQSAGVQAEAARTVELLGARAVYRSLIARETGCEALAQALRNASRXXXXXXXXXXXXXDARRALLRALRLMARDDRSRARLAACGACEAAVAALLASPRDAAAQASGWAAAASLAYRCRGXXXXXXXXXXXXXXGCAKLRSAGVCAAFAAALRGFPDDPYIQMDALLTAATLVGSGADADAAATAKLLLTVGACAAVVRTMGAYSAGSNRPNAQQIQLRSVRVLAVLARAAAVALPAEAXXXXXXXXXXXXDAAEEXXXXXXXXXXXXXXSTAAGGDAXXXXXXXXXXXDLRXXXXXXXXXXXXAARAYPDSPDVREACALFRRAVSGEERAALDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAGVAMDDGADALDVAGLDAQLHDAGLGHVVAAAAAPRPPPELIPRGSGR
Sbjct: 1 MREYPEDLHLQADVLDQILKLIPTRSRDLVEQGLCQALVNVMSSHSSAVRVQYLALKAMAKCLGCLPDCKAAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPFAEDNNGKASLGAAACASVAVAVKRHAGVHDIALLGLRLANALACGGAEAIGALGDAGACAAVVAAMRQFPQSAGVQAEAARTVELLGARAVYRSLIARETGCEALAQALRNASRXXXXXXXXXXXXXDARRALLRALRLMARDDRSRARLAACGACEAAVAALLASPRDAAAQASGWAAAASLAYRCRGXXXXXXXXXXXXXXGCAKLRSAGVCAAFAAALRGFPDDPYIQMDALLTAATLVGSGADADAAATAKLLLTVGACAAVVRTMGAYSAGSNRPNAQQIQLRSVRVLAVLARAAAVALPAEAXXXXXXXXXXXXDAAEEXXXXXXXXXXXXXXSTAAGGDAXXXXXXXXXXXDLRXXXXXXXXXXXXAARAYPDSPDVREACALFRRAVSGEERAALDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAGVAMDDGADALDVAGLDAQLHDAGLGHVVAAAAAPRPPPELIPRGSGR 595
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|354069|estExt_Genemark1.C_Ctg_2060025 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 354391 |
| Track | FilteredModels1 |
| ProteinId | 354069 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17433 ID=mRNA_17433|Name=jgi.p|Trimin1|354069|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1788bp|location=Sequence derived from alignment at Contig_206:225745..229011- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGCGCGAATATCCTGAGGACCTTCACCTGCAGGCCGACGTGCTAGACCA
GATCCTCAAGCTAATTCCAACCCGCAGCCGTGACCTGGTTGAACAGGGCC
TCTGCCAGGCCCTCGTCAACGTGATGTCCTCCCACTCCAGCGCCGTGCGC
GTCCAGTACCTGGCTCTGAAGGCCATGGCGAAGTGCCTGGGCTGCCTGCC
AGACTGCAAGGCCGCCATGGCCAGCGCGGGAGCCTGCAAGGTGATCCTGA
AAGCCATGGAGGTCCACAAGGACGACCCTCACATCCAGCTGGCAGCGCTG
ACGGCCATGGCGCCCTTTGCTGAAGACAACAACGGCAAAGCCAGCCTGGG
CGCAGCGGCGTGCGCGAGCGTGGCCGTCGCCGTCAAGCGGCACGCGGGCG
TTCACGACATTGCGCTGCTGGGCCTGCGGCTGGCGAACGCGCTGGCGTGC
GGCGGCGCGGAGGCGATAGGCGCGCTGGGGGATGCGGGGGCGTGCGCGGC
GGTGGTCGCTGCGATGCGGCAGTTCCCGCAGAGCGCGGGGGTGCAGGCGG
AGGCGGCGAGGACGGTGGAGCTGCTCGGCGCGCGGGCCGTCTACAGATCC
CTCATCGCCAGAGAGACTGGCTGCGAGGCGCTCGCGCAGGCGCTGCGCAA
CGCGTCGCGCGGCGGCAGCAGCGGCGGCGGCAGCGCGGCAGCAGCGGCGG
ACGCGCGGCGCGCCCTGCTGCGCGCGCTGCGCCTCATGGCGCGCGACGAC
CGCAGCAGGGCGCGGCTCGCGGCGTGCGGCGCGTGCGAGGCGGCGGTGGC
GGCGCTGCTCGCGTCGCCGCGCGACGCCGCGGCGCAGGCGAGCGGCTGGG
CGGCGGCGGCGTCGCTGGCGTACCGCTGCCGCGGCGGCGGCGGCGGCAGC
GGCGGCGGCGGCGGCGGCGAAGGCGATGGCTGCGCAAAGCTGCGCTCGGC
GGGCGTGTGCGCGGCGTTTGCGGCGGCGCTGCGCGGCTTCCCGGACGACC
CATACATTCAGATGGACGCGCTCCTCACCGCGGCGACGCTCGTCGGCAGC
GGCGCCGACGCCGACGCCGCCGCCACCGCCAAGCTCCTCCTGACCGTGGG
CGCGTGCGCCGCCGTCGTGCGCACCATGGGCGCCTACAGTGCCGGCTCCA
ACCGCCCCAACGCTCAGCAAATCCAGCTGCGCAGCGTACGCGTCCTGGCG
GTACTGGCGCGCGCCGCCGCGGTGGCGCTGCCGGCGGAAGCGGCGGCATC
TGCGGCAGCGGCGGCGGCGGCGGCGGGCGACGCGGCGGAGGAGGCGGCGG
CCGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGGCAGCACGGCGGCGGGG
GGCGACGCGGCGGCGGCGGCGCGCGGCGCGGCGGCGGCGCGCGACTTGCG
CGCGCTGCACGGCGACGCGCCGGCGGCGGTGGAGGCGGCGGCGCGCGCGT
ACCCCGACAGCCCCGACGTGCGCGAGGCGTGCGCGCTGTTCCGGCGCGCC
GTGAGCGGCGAGGAGCGCGCAGCTTTGGACGTTGCTGCCGCCGCCGCTGC
TGCGGCCGACGACGACGACCCTGGCGCGGCAGCGGCGGCGGCAGCAGCGG
AGGCAGCGGCGGCGGCGGCGGCGGCGGCTGGCAGCGCCGCTGGTGTTGCC
ATGGACGACGGCGCTGACGCTCTGGATGTGGCGGGGTTGGATGCGCAGCT
GCACGATGCTGGCTTGGGCCACGTGGTCGCGGCAGCAGCGGCGCCGCGGC
CGCCGCCGGAGCTCATACCGCGCGGCAGCGGGCGCTGA back to topprotein sequence of jgi.p|Trimin1|354069 >Trimin1|354069|estExt_Genemark1.C_Ctg_2060025 ID=Trimin1|354069|estExt_Genemark1.C_Ctg_2060025|Name=jgi.p|Trimin1|354069|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=596bp
MREYPEDLHLQADVLDQILKLIPTRSRDLVEQGLCQALVNVMSSHSSAVR
VQYLALKAMAKCLGCLPDCKAAMASAGACKVILKAMEVHKDDPHIQLAAL
TAMAPFAEDNNGKASLGAAACASVAVAVKRHAGVHDIALLGLRLANALAC
GGAEAIGALGDAGACAAVVAAMRQFPQSAGVQAEAARTVELLGARAVYRS
LIARETGCEALAQALRNASRGGSSGGGSAAAAADARRALLRALRLMARDD
RSRARLAACGACEAAVAALLASPRDAAAQASGWAAAASLAYRCRGGGGGS
GGGGGGEGDGCAKLRSAGVCAAFAAALRGFPDDPYIQMDALLTAATLVGS
GADADAAATAKLLLTVGACAAVVRTMGAYSAGSNRPNAQQIQLRSVRVLA
VLARAAAVALPAEAAASAAAAAAAAGDAAEEAAAAAAAAAAAAAGSTAAG
GDAAAAARGAAAARDLRALHGDAPAAVEAAARAYPDSPDVREACALFRRA
VSGEERAALDVAAAAAAAADDDDPGAAAAAAAAEAAAAAAAAAGSAAGVA
MDDGADALDVAGLDAQLHDAGLGHVVAAAAAPRPPPELIPRGSGR* back to topmRNA from alignment at Contig_206:225745..229011- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_17433 ID=mRNA_17433|Name=jgi.p|Trimin1|354069|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3267bp|location=Sequence derived from alignment at Contig_206:225745..229011- (Tribonema minus UTEX_B_3156 )
ATGCGCGAATATCCTGAGGACCTTCACCTGCAGGCCGACGTGCTAGACCA
GATCCTCAAGCTAATTCCAACCCGCAGCCGTGACCTGGTTGAACAGGGCC
TCTGCCAGGCCCTCGTCAACGTGATGTCCTCCCACTCCAGCGCCGTGCGC
GTCCAGTACCTGGCTCTGAAGGCCATGGCGAAGTGCCTGGGCTGCCTGCC
AGACTGCAAGGCCGCCATGGCCAGCGCGGGAGCCTGCAAGGTGATCCTGA
AAGCCATGGAGGTCCACAAGGACGACCCTCACATCCAGCTGGCAGCGCTG
ACGGCCATGGCGCCCTTTGCTGAAGACAACAACGGCAAAGCCAGCCTGGG
CGCAGCGGCGTGCGCGAGCGTGGCCGTCGCCGTCAAGCGGCACGCGGGCG
TTCACGACATTGCGCTGCTGGGCCTGCGGCTGGCGAACGCGCTGGCGTGC
GGCGGCGCGGAGGCGATAGGCGCGCTGGGGGATGCGGGGGCGTGCGCGGC
GGTGGTCGCTGCGATGCGGCAGTTCCCGCAGAGCGCGGGGGTGCAGGCGG
AGGCGGCGAGGACGGTGGAGCTGCTCGGCGCGCGGGCCGTCTACAGGTGC
GCAGCCCGGCCTCCTGATTGGGGATTCATGATTGTGAATAGTGATTGATT
CGCCCGCAGCGTCTTCACGGAAGCGCCTGCAGTTTCAGGAAGTCGCTTTG
AACAAACACCGTTTACAGGTGCGCCGCCCGGCCTGATGGTAAATGAAAAC
GAATCAAAGGATCGTAGAGCTCTACTGAGGTGACAAGGGATGGTTAGCCG
TAAGCGCCTTTCCCCAATAACCGTGGTCGCCGCGAATCATGTTTGTGATT
GATGATTGATTCGCCCGCAGTGTCTTCACGGAAGCGCCTGCAGTTTCAGG
GAGTATGCGACGAGGGACTGGGCTTCTCTCAGATACCTGCAACTTGCGTG
CGAGCAGCCCATTTTGACAGCAGTGGACCTGCATGCAACCGTGCTTCCAG
AGGGGCTGCCAGGATCCCACGTCGTGCTGTACAGTAGGGCATTGTCTGAA
CTGCCAGCGGTGATGCTGCTGTGCGGCGTTCGTTTCTTGATGATGGCGTA
CGTGGTATCGTCACACTCCGGCAGGGGCATCCCAGGAACTGGGGCGGTGG
CCCCGTGGCCAGCAGTCCGTAGTGGCTGAAACACGGGTTGCACTTCTTTT
TTCGTGCCCTGTCCCACAGCTGACGGTGCGGTGATACATACATACACGTG
CGTTGCGCGTCAGGGTCCCCGCTTCTGTTGCGCAATCACGGCGGCGCGTC
CGGGCCAGCCATTGCGACAATCACGCTGTTCTAGGCGGCACACGCTCGCA
GCGGCAGGCAGGTGCAACTTCAATTGTGTTGTTGACCATGGCTGAGCATA
GCAAGCTCATTAGTCAAATCTTGGCGGCTTCCCGCGTTCGTATAGCAGGA
GCATCCGCCCATGCCCGTACTTTCAAGCGCTGTCTCCATTCACTACGCTC
CCCGAACTTTGCCTCACACCCTGTCACGACACTGCAGCCGTGGCAACTTT
GGGGCTCACTGCTCGACGCCAGTAGTGAAGTGGTGTCCTGTGGGCCACAA
TAGTCCAGAAGCACGCCGCCTGTGTCCCTTCTAGCATGTGCCGCACGCTT
TTGTGGATCTCATACTGTGTTGTGTTCCAACACTTTTGTTTTTTGCAAAT
GGTGGGCACAACAGGTCGACTGCGGCCCTGCAGGCTAATTCTAAACTAAG
CCGATGCGCGTGAAATGACGAAGCCACCGCACGCGCACCCACGCACCCGC
GCGCACGCGCACCGCGCCGCCGCGCCGCAGATCCCTCATCGCCAGAGAGA
CTGGCTGCGAGGCGCTCGCGCAGGCGCTGCGCAACGCGTCGCGCGGCGGC
AGCAGCGGCGGCGGCAGCGCGGCAGCAGCGGCGGACGCGCGGCGCGCCCT
GCTGCGCGCGCTGCGCCTCATGGCGCGCGACGACCGCAGCAGGGCGCGGC
TCGCGGCGTGCGGCGCGTGCGAGGCGGCGGTGGCGGCGCTGCTCGCGTCG
CCGCGCGACGCCGCGGCGCAGGCGAGCGGCTGGGCGGCGGCGGCGTCGCT
GGCGTACCGCTGCCGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCG
GCGAAGGCGATGGCTGCGCAAAGCTGCGCTCGGCGGGCGTGTGCGCGGCG
TTTGCGGCGGCGCTGCGCGGCTTCCCGGACGACCCATACATTCAGGTACG
CATACTGAGCACCCATGCCCCGGACGTTGAAAGCTTGCACATAGAAGTCT
TTTGGCTCCCCTTGCATTTGGTGGCACTGTTTGACTCATGGCCGATTGAT
GCAGCAGCGGCGACCACTGTCATCGGTGGAAGGCACTGGTTGCTGATCAC
ACCTTGTCACCTAGAGCTCTACGATCTGTTGAATCGTCTCCAGAATCAGA
TATACGGTTTGCACCGACTGAGCTTCAATGTGTGACGCAGATGGACGCGC
TCCTCACCGCGGCGACGCTCGTCGGCAGCGGCGCCGACGCCGACGCCGCC
GCCACCGCCAAGCTCCTCCTGACCGTGGGCGCGTGCGCCGCCGTCGTGCG
CACCATGGGCGCCTACAGTGCCGGCTCCAACCGCCCCAACGCTCAGCAAA
TCCAGCTGCGCAGCGTACGCGTCCTGGCGGTACTGGCGCGCGCCGCCGCG
GTGGCGCTGCCGGCGGAAGCGGCGGCATCTGCGGCAGCGGCGGCGGCGGC
GGCGGGCGACGCGGCGGAGGAGGCGGCGGCCGCCGCGGCGGCGGCGGCGG
CGGCGGCGGCGGGCAGCACGGCGGCGGGGGGCGACGCGGCGGCGGCGGCG
CGCGGCGCGGCGGCGGCGCGCGACTTGCGCGCGCTGCACGGCGACGCGCC
GGCGGCGGTGGAGGCGGCGGCGCGCGCGTACCCCGACAGCCCCGACGTGC
GCGAGGCGTGCGCGCTGTTCCGGCGCGCCGTGAGCGGCGAGGAGCGCGCA
GCTTTGGACGTTGCTGCCGCCGCCGCTGCTGCGGCCGACGACGACGACCC
TGGCGCGGCAGCGGCGGCGGCAGCAGCGGAGGCAGCGGCGGCGGCGGCGG
CGGCGGCTGGCAGCGCCGCTGGTGTTGCCATGGACGACGGCGCTGACGCT
CTGGATGTGGCGGGGTTGGATGCGCAGCTGCACGATGCTGGCTTGGGCCA
CGTGGTCGCGGCAGCAGCGGCGCCGCGGCCGCCGCCGGAGCTCATACCGC
GCGGCAGCGGGCGCTGA back to topCoding sequence (CDS) from alignment at Contig_206:225745..229011- >mRNA_17433 ID=mRNA_17433|Name=jgi.p|Trimin1|354069|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1788bp|location=Sequence derived from alignment at Contig_206:225745..229011- (Tribonema minus UTEX_B_3156 )
ATGCGCGAATATCCTGAGGACCTTCACCTGCAGGCCGACGTGCTAGACCA
GATCCTCAAGCTAATTCCAACCCGCAGCCGTGACCTGGTTGAACAGGGCC
TCTGCCAGGCCCTCGTCAACGTGATGTCCTCCCACTCCAGCGCCGTGCGC
GTCCAGTACCTGGCTCTGAAGGCCATGGCGAAGTGCCTGGGCTGCCTGCC
AGACTGCAAGGCCGCCATGGCCAGCGCGGGAGCCTGCAAGGTGATCCTGA
AAGCCATGGAGGTCCACAAGGACGACCCTCACATCCAGCTGGCAGCGCTG
ACGGCCATGGCGCCCTTTGCTGAAGACAACAACGGCAAAGCCAGCCTGGG
CGCAGCGGCGTGCGCGAGCGTGGCCGTCGCCGTCAAGCGGCACGCGGGCG
TTCACGACATTGCGCTGCTGGGCCTGCGGCTGGCGAACGCGCTGGCGTGC
GGCGGCGCGGAGGCGATAGGCGCGCTGGGGGATGCGGGGGCGTGCGCGGC
GGTGGTCGCTGCGATGCGGCAGTTCCCGCAGAGCGCGGGGGTGCAGGCGG
AGGCGGCGAGGACGGTGGAGCTGCTCGGCGCGCGGGCCGTCTACAGATCC
CTCATCGCCAGAGAGACTGGCTGCGAGGCGCTCGCGCAGGCGCTGCGCAA
CGCGTCGCGCGGCGGCAGCAGCGGCGGCGGCAGCGCGGCAGCAGCGGCGG
ACGCGCGGCGCGCCCTGCTGCGCGCGCTGCGCCTCATGGCGCGCGACGAC
CGCAGCAGGGCGCGGCTCGCGGCGTGCGGCGCGTGCGAGGCGGCGGTGGC
GGCGCTGCTCGCGTCGCCGCGCGACGCCGCGGCGCAGGCGAGCGGCTGGG
CGGCGGCGGCGTCGCTGGCGTACCGCTGCCGCGGCGGCGGCGGCGGCAGC
GGCGGCGGCGGCGGCGGCGAAGGCGATGGCTGCGCAAAGCTGCGCTCGGC
GGGCGTGTGCGCGGCGTTTGCGGCGGCGCTGCGCGGCTTCCCGGACGACC
CATACATTCAGATGGACGCGCTCCTCACCGCGGCGACGCTCGTCGGCAGC
GGCGCCGACGCCGACGCCGCCGCCACCGCCAAGCTCCTCCTGACCGTGGG
CGCGTGCGCCGCCGTCGTGCGCACCATGGGCGCCTACAGTGCCGGCTCCA
ACCGCCCCAACGCTCAGCAAATCCAGCTGCGCAGCGTACGCGTCCTGGCG
GTACTGGCGCGCGCCGCCGCGGTGGCGCTGCCGGCGGAAGCGGCGGCATC
TGCGGCAGCGGCGGCGGCGGCGGCGGGCGACGCGGCGGAGGAGGCGGCGG
CCGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGGCAGCACGGCGGCGGGG
GGCGACGCGGCGGCGGCGGCGCGCGGCGCGGCGGCGGCGCGCGACTTGCG
CGCGCTGCACGGCGACGCGCCGGCGGCGGTGGAGGCGGCGGCGCGCGCGT
ACCCCGACAGCCCCGACGTGCGCGAGGCGTGCGCGCTGTTCCGGCGCGCC
GTGAGCGGCGAGGAGCGCGCAGCTTTGGACGTTGCTGCCGCCGCCGCTGC
TGCGGCCGACGACGACGACCCTGGCGCGGCAGCGGCGGCGGCAGCAGCGG
AGGCAGCGGCGGCGGCGGCGGCGGCGGCTGGCAGCGCCGCTGGTGTTGCC
ATGGACGACGGCGCTGACGCTCTGGATGTGGCGGGGTTGGATGCGCAGCT
GCACGATGCTGGCTTGGGCCACGTGGTCGCGGCAGCAGCGGCGCCGCGGC
CGCCGCCGGAGCTCATACCGCGCGGCAGCGGGCGCTGA back to top
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