mRNA_17414 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|155418 vs. uniprot
Match: A0A835Z1L4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L4_9STRA) HSP 1 Score: 479 bits (1232), Expect = 4.560e-171 Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1 Query: 1 AASQLRDASELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLASQPVCLIWGMHTCPAFEGLGTASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIEALL 702 AASQLRDASELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLASQPVCLIWGMHTCPAFEGLGTASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIEALL Sbjct: 1 AASQLRDASELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLASQPVCLIWGMHTCPAFEGLGTASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIEALL 234
BLAST of jgi.p|Trimin1|155418 vs. uniprot
Match: A0A6H5L0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M4_9PHAE) HSP 1 Score: 208 bits (530), Expect = 3.130e-63 Identity = 113/244 (46.31%), Postives = 143/244 (58.61%), Query Frame = 1 Query: 1 AASQLRDASELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLD-GAAWTLSEHL------ASQPVCLIWGMHTCPAFEGLGT---ASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIEALL 702 AA LR SELT +C+ FP +NF+ + YG SP ++L+ G+ AIDFT +D G W L EHL A +PV LIWGM TCPAF+G+G + P+D+C Y DE LV Y V F HL GPEPHP P TNFD GVV ++WSTV Q ++Y+ R+AM V D VHP A++PD +P PY D P+WCSY GAR A I DG + Q W H GD+A ++ L Sbjct: 27 AAVNLRPESELTGNCFDFPSNNFDRQRSMIGMYGQSPKLLLETGSGAIDFTSHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGMGDQPPSPPWDKCGYRDEYDLVETYKDR---VTFVHLYGPEPHPTAPATNFDHGVVVNSYWSTVPQPKSYEQRLAMVDRVKDLVHPEQAIIPDYMPGNPYSD-----LINPLWCSYGIGARPATAIAQDGTIFYQQEWLHTGDLANELDVFL 262
BLAST of jgi.p|Trimin1|155418 vs. uniprot
Match: A0A7S3K7C6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K7C6_9STRA) HSP 1 Score: 201 bits (510), Expect = 5.270e-61 Identity = 108/229 (47.16%), Postives = 139/229 (60.70%), Query Frame = 1 Query: 43 CYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAID----FTLYDLDGAAW-TLSEHLASQPVCLIWGMHTCPAFEGLGTAS--PFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAP--YGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIEALL 702 C+ FP +F+ TNC+KCTYG SPHI + G TL G++W +L + + LIWGM TCPAF+GLGT PFDEC+Y DE LV Y G V F HL+GPEPHPITPD NFDSG +N+WST+AQ +T+D R+ +A+ A +HP + L D L DAP + +G QP WC+ GARTA+LI G V+ Q WF D+A A++ LL Sbjct: 25 CFDFPKRSFSTTNCVKCTYGASPHIPVSVGDNISPQLQALTLSTASGSSWKSLGTETSGKISVLIWGMWTCPAFQGLGTGGSPPFDECSYRDEYDLVETYANKG--VRFIHLIGPEPHPITPDVNFDSGKQLMNYWSTIAQPKTWDDRLQVAQRTAALIHPRSLTLVDPLADAPTQHKEGTEGFKNQPTWCTLGLGARTAILIDQHGTVQFTQDWFRKSDLANALDTLL 251
BLAST of jgi.p|Trimin1|155418 vs. uniprot
Match: A0A6H5KKN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN7_9PHAE) HSP 1 Score: 204 bits (519), Expect = 2.700e-59 Identity = 106/234 (45.30%), Postives = 140/234 (59.83%), Query Frame = 1 Query: 1 AASQLRDASELTDSCYGFPDDNFNGTNCIKCTYG-TSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHL--ASQPVCLIWGMHTCPAFEGLGTASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIE 693 A+++LR S+LT +C+ FP +NF+ N IK G +P++ L G A+DFTL+DL G W L E L PV ++WGM TCPAF+G GT P+D+C Y DE LV AYGG F HL GPEPHP P TNFD G FWS QA Y+ RVAMA+ + ++HP+ +L D LP PY + QPVWCSY+ GAR ++ DG + + WFH+ + AI+ Sbjct: 155 ASAELRPESDLTSNCFDFPANNFDRENSIKAVNGGNTPYLPLTVGEDAVDFTLHDLKGRRWNLGETLERTGLPVVMVWGMFTCPAFQGYGTYPPWDKCGYRDEYDLVEAYGGK---ATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVFQQATRYEERVAMAQRIGRRIHPSQDILVDYLPGNPYSE-----LIQPVWCSYSMGARPVTVVSPDGKLFFQRGWFHSEHVGRAID 380
BLAST of jgi.p|Trimin1|155418 vs. uniprot
Match: A0A7S2RV85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV85_9STRA) HSP 1 Score: 188 bits (478), Expect = 3.670e-56 Identity = 104/236 (44.07%), Postives = 143/236 (60.59%), Query Frame = 1 Query: 1 AASQLRDASELTDSCYGFPDDNFNGTNCIKCTY--GTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLASQPVCLIWGMHTCPAFEGLGTASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIEALL 702 A ++L AS+L+ C+G P+ F + I G + + AG +A+DFTLYDL G TLS L +PV LIWGM TCPAF+GL + PFD+ + W+E +V Y V F HLVGPEPHP+ PD NFD G V + WSTV Q YD R+ +A VA+ VHP+A +L DL P Y D ++ PVWC+ +R+A+L+ DG + +Q+WF D++AAI+AL+ Sbjct: 23 ALAELDPASQLSSGCFGLPEKGFGLQSNIAQVDADGEAVWVSRAAGDSAVDFTLYDLAGNEVTLSTLLEDKPVALIWGMWTCPAFQGLRSDYPFDQNSRWEEWDVVEKYKDV---VTFLHLVGPEPHPLAPDQNFDKGYVWMESWSTVRQPTNYDERLVLANKVAEYVHPDATVLADLYPGNSYAAADVSS--NPVWCTMGLHSRSALLVDQDGTITFSQSWFRKDDLSAAIDALV 253
BLAST of jgi.p|Trimin1|155418 vs. uniprot
Match: A0A6H5JSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG9_9PHAE) HSP 1 Score: 189 bits (479), Expect = 8.090e-56 Identity = 102/227 (44.93%), Postives = 132/227 (58.15%), Query Frame = 1 Query: 25 SELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLAS---QPVCLIWGMHTCPAFEGLGTASPFDEC-AYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIE 693 +EL +CY FP++NF+ N I+ YGTSPH+V D G+ A+DFTL+DLDG W L E LA+ +PV +I+GM TCPAF+GL A AYW E LV YG F H+ GPEPHP PD NFDSG N WS Q YD RV A+ + HP+ +LPD L PY + QPVWC+YA+GAR +V++ + G + Q W + AI+ Sbjct: 31 TELITNCYNFPEENFHKGNSIRDIYGTSPHLVRDLGSPAVDFTLHDLDGNRWNLGEVLAAGAGKPVVMIFGMWTCPAFQGLDAAEGSGNTWAYWHEHNLVEQYGDK---AIFVHIYGPEPHPQPPDLNFDSGSFAPNAWSVYRQPVMYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLN-----QPVWCTYANGARPSVMVSSSGSIFYQQEWMSTEGLENAID 249
BLAST of jgi.p|Trimin1|155418 vs. uniprot
Match: D8LC80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC80_ECTSI) HSP 1 Score: 175 bits (444), Expect = 7.260e-51 Identity = 95/214 (44.39%), Postives = 123/214 (57.48%), Query Frame = 1 Query: 64 NFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLAS---QPVCLIWGMHTCPAFEGLGTASPFDEC-AYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIE 693 NF+ N ++ YGTSPH+V D G+ A+DFTL+DLDG W L E LA+ +PV LI+GM TCPA++GL +YWDE LV YG F H+ GPEPHP PD NFD+G NFWS Q YD RV A+ + HP+ +LPD L PY + QPVWC+YA+GAR +V++ + G V Q W + AI+ Sbjct: 19 NFHKGNSVRDIYGTSPHLVRDLGSPAVDFTLHDLDGNRWNLGEVLAAGEGKPVVLIFGMWTCPAYQGLDVIEGSGNTWSYWDEHTLVEQYGDK---AIFVHIYGPEPHPKPPDLNFDAGTFSPNFWSVHRQPVIYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLN-----QPVWCTYANGARPSVMVSSSGSVFYQQEWLSTEGLGNAID 224
BLAST of jgi.p|Trimin1|155418 vs. uniprot
Match: A0A7S2C362_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C362_9STRA) HSP 1 Score: 134 bits (338), Expect = 1.640e-33 Identity = 89/236 (37.71%), Postives = 124/236 (52.54%), Query Frame = 1 Query: 4 ASQLRDASELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFTLYDLDGAAWTLSEHLASQPVCLIWGMHTCPAFEGL----GTASPFDECAYWDEAALVAAYGGSGGGVAFAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDA--PYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIE 693 A +L++ S L C+ FP +F+ N I Y P ++ G AIDF L LD + L + + ++PV +++GM TCPAF+GL S F + +D+ ALV Y F +L EPHP+ PD NFD+G WST Q RTY R A+ +A+++H + LL D L + P + PVWC+Y G+R A LIG DG + Q WFHA MA A+E Sbjct: 49 AERLQNTSNLIGKCFNFPSSDFDYDNSINAYYPNDPTPLVARGGFAIDFALPSLDDNVYYLRDLIRTKPVVMVYGMLTCPAFQGLYLEDHKESHFSK---YDQWALVDKYHKD---FHFVNLYSVEPHPMAPDKNFDTGGHVEYAWSTFRQPRTYRDRGYFAQNLAEELHEKSILLVDNLGNEKLPELKENNIPEYNPVWCTYGPGSRMAFLIGQDGKLYNVQGWFHATTMAGAME 278
BLAST of jgi.p|Trimin1|155418 vs. uniprot
Match: A0A7S2CPV9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPV9_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 7.780e-17 Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = 1 Query: 346 FAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARA-VADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIE 693 F +L EPHP++PD NFD+G+ WS QARTY R A+ +AD +HP LL D L + + + PVWC+Y G+R A LIG DG + Q WFHA MA A+E Sbjct: 22 FVNLYSTEPHPMSPDKNFDTGMNVQFDWSNFRQARTYKDRGYYAKTYLADDLHPENLLLIDNLANTKLPELEDMPEYNPVWCTYGPGSRMAFLIGQDGKLYNVQAWFHATTMAGAME 138 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155418 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17414 ID=mRNA_17414|Name=jgi.p|Trimin1|155418|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=702bp|location=Sequence derived from alignment at Contig_206:39419..40760+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCCGCATCGCAGCTGAGGGACGCCTCAGAACTGACCGACAGCTGCTATGGback to top protein sequence of jgi.p|Trimin1|155418 >Trimin1|155418|gw1.206.25.1 ID=Trimin1|155418|gw1.206.25.1|Name=jgi.p|Trimin1|155418|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp AASQLRDASELTDSCYGFPDDNFNGTNCIKCTYGTSPHIVLDAGAAAIDFback to top mRNA from alignment at Contig_206:39419..40760+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17414 ID=mRNA_17414|Name=jgi.p|Trimin1|155418|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1342bp|location=Sequence derived from alignment at Contig_206:39419..40760+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_206:39419..40760+ >mRNA_17414 ID=mRNA_17414|Name=jgi.p|Trimin1|155418|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=702bp|location=Sequence derived from alignment at Contig_206:39419..40760+ (Tribonema minus UTEX_B_3156 )back to top |