mRNA_1739 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|64651
Unique Name	mRNA_1739
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|64651 vs. uniprot
Match: A0A836CD88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD88_9STRA)

HSP 1 Score: 437 bits (1123), Expect = 1.250e-152
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 3

Query:  177 MAASQHLYLDDIAGYRSKTHDACRYFESKYSRPGDEISQQTEAYMADALQQIATDVERLSTQLVQVVDAQSGEIDGLASRISLIQANLLRSQQQSAKQKEVSLRLPSQPAPQYEPVTVLESVRRRAQQTHVRVPLRARLEDPYPAADMHADADDFDAAGAFDAAPPKRRLSRHAISEMSSVSSGGLPSPGSTHLPSTSSSFSRPPLASERSAPGMYAVPPPQRPSYTPAXXXXXXXXXXXXXXXXXXXLLSQQNRGK 947
            MAASQHLYLDDIAGYRSKTHDACRYFESKYSRPGDEISQQTEAYMADALQQIATDVERLSTQLVQVVDAQSGEIDGLASRISLIQANLLRSQQQSAKQKEVSLRLPSQPAPQYEPVTVLESVRRRAQQTHVRVPLRARLEDPYPAADMHADADDFDAAGAFDAAPPKRRLSRHAISEMSSVSSGGLPSPGSTHLPSTSSSFSRPPLASERSAPGMYAVPPPQRPSYTPAXXXXXXXXXXXXXXXXXXXLLSQQNRGK
Sbjct:    1 MAASQHLYLDDIAGYRSKTHDACRYFESKYSRPGDEISQQTEAYMADALQQIATDVERLSTQLVQVVDAQSGEIDGLASRISLIQANLLRSQQQSAKQKEVSLRLPSQPAPQYEPVTVLESVRRRAQQTHVRVPLRARLEDPYPAADMHADADDFDAAGAFDAAPPKRRLSRHAISEMSSVSSGGLPSPGSTHLPSTSSSFSRPPLASERSAPGMYAVPPPQRPSYTPAXXXXXXXXXXXXXXXXXXXLLSQQNRGK 257

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|64651 vs. uniprot

BLAST of jgi.p|Trimin1|64651 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CD88_9STRA	1.250e-152	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_4	contig	Contig_4:1748023..1748983 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|64651\|CE64650_57
Hectar predicted targeting category	other localisation
TranscriptId	64973
Track	FilteredModels1
ProteinId	64651

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|64651	gene_1739	Tribonema minus UTEX_B_3156	gene	Contig_4 1748023..1748983 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1739_1	exon_1739_1	Tribonema minus UTEX_B_3156	exon	Contig_4 1748023..1748983 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_1739	UTR5_1739	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_4 1748023..1748198 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1739	CDS_1739	Tribonema minus UTEX_B_3156	CDS	Contig_4 1748199..1748972 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_1739	UTR3_1739	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_4 1748973..1748983 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|64651	Trimin1\|64651\|CE64650_57	Tribonema minus UTEX_B_3156	polypeptide	Contig_4 1748199..1748972 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_4:1748023..1748983+
coding sequence from alignment at Contig_4:1748023..1748983+

spliced messenger RNA

>mRNA_1739 ID=mRNA_1739|Name=jgi.p|Trimin1|64651|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=961bp|location=Sequence derived from alignment at Contig_4:1748023..1748983+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGGTTCCAAGAGCTGGAGTGCGGTTAACCATTGCGATACGTCAGTGCT
GACACCAAGCAAACCTGTACCTCTGCAGTGAGAGCAAGGCGACTCCGGAA
GTACAGTCCGATCACAAGGGCGAGTTCTTGAAAGCAGAAGTATTTGTTGA
CACATTGGTTAGGTCCCGCAGCAGCCATGGCTGCCAGCCAGCACCTGTAC
CTGGACGACATTGCTGGCTACAGATCCAAAACCCATGATGCCTGCCGCTA
CTTTGAGTCCAAATACAGCAGGCCAGGGGACGAGATCTCGCAGCAAACGG
AAGCCTACATGGCAGATGCGCTGCAGCAGATCGCCACGGACGTGGAGCGC
CTGTCCACTCAGCTCGTGCAGGTGGTGGATGCGCAGTCCGGGGAGATCGA
CGGCCTCGCCTCTCGCATCTCCCTCATCCAGGCCAACCTGCTGCGCTCGC
AGCAGCAGAGCGCCAAGCAGAAGGAGGTGTCGCTGCGGCTCCCCTCGCAG
CCCGCGCCGCAGTACGAGCCGGTGACCGTGCTGGAGAGCGTGCGCAGGCG
CGCGCAGCAGACGCACGTGCGCGTCCCCCTGCGCGCGCGCCTTGAGGACC
CGTACCCCGCCGCCGACATGCACGCGGACGCGGACGACTTCGACGCGGCG
GGCGCGTTCGACGCCGCCCCCCCCAAGCGCCGCCTGTCGCGCCACGCCAT
CAGCGAGATGAGCAGCGTCAGCAGCGGCGGCCTGCCGAGCCCCGGCTCGA
CGCACCTGCCCTCAACTTCAAGTTCGTTCTCGCGGCCGCCGCTGGCGTCC
GAGCGGTCGGCGCCGGGTATGTACGCCGTGCCGCCGCCGCAGCGGCCGTC
GTACACGCCCGCCGCGCCGCCGCCGCCGCCGCCCGCGGAGGAGCGCAGCG
CGGTGCTGGCGCCGCCGGTGCTGCTCTCGCAGCAGAACAGAGGCAAATGA
CACAATAGGAG

protein sequence of jgi.p|Trimin1|64651

>Trimin1|64651|CE64650_57 ID=Trimin1|64651|CE64650_57|Name=jgi.p|Trimin1|64651|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=258bp
MAASQHLYLDDIAGYRSKTHDACRYFESKYSRPGDEISQQTEAYMADALQ
QIATDVERLSTQLVQVVDAQSGEIDGLASRISLIQANLLRSQQQSAKQKE
VSLRLPSQPAPQYEPVTVLESVRRRAQQTHVRVPLRARLEDPYPAADMHA
DADDFDAAGAFDAAPPKRRLSRHAISEMSSVSSGGLPSPGSTHLPSTSSS
FSRPPLASERSAPGMYAVPPPQRPSYTPAAPPPPPPAEERSAVLAPPVLL
SQQNRGK*

mRNA from alignment at Contig_4:1748023..1748983+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1739 ID=mRNA_1739|Name=jgi.p|Trimin1|64651|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=961bp|location=Sequence derived from alignment at Contig_4:1748023..1748983+ (Tribonema minus UTEX_B_3156 )
CTCGGTTCCAAGAGCTGGAGTGCGGTTAACCATTGCGATACGTCAGTGCT
GACACCAAGCAAACCTGTACCTCTGCAGTGAGAGCAAGGCGACTCCGGAA
GTACAGTCCGATCACAAGGGCGAGTTCTTGAAAGCAGAAGTATTTGTTGA
CACATTGGTTAGGTCCCGCAGCAGCCATGGCTGCCAGCCAGCACCTGTAC
CTGGACGACATTGCTGGCTACAGATCCAAAACCCATGATGCCTGCCGCTA
CTTTGAGTCCAAATACAGCAGGCCAGGGGACGAGATCTCGCAGCAAACGG
AAGCCTACATGGCAGATGCGCTGCAGCAGATCGCCACGGACGTGGAGCGC
CTGTCCACTCAGCTCGTGCAGGTGGTGGATGCGCAGTCCGGGGAGATCGA
CGGCCTCGCCTCTCGCATCTCCCTCATCCAGGCCAACCTGCTGCGCTCGC
AGCAGCAGAGCGCCAAGCAGAAGGAGGTGTCGCTGCGGCTCCCCTCGCAG
CCCGCGCCGCAGTACGAGCCGGTGACCGTGCTGGAGAGCGTGCGCAGGCG
CGCGCAGCAGACGCACGTGCGCGTCCCCCTGCGCGCGCGCCTTGAGGACC
CGTACCCCGCCGCCGACATGCACGCGGACGCGGACGACTTCGACGCGGCG
GGCGCGTTCGACGCCGCCCCCCCCAAGCGCCGCCTGTCGCGCCACGCCAT
CAGCGAGATGAGCAGCGTCAGCAGCGGCGGCCTGCCGAGCCCCGGCTCGA
CGCACCTGCCCTCAACTTCAAGTTCGTTCTCGCGGCCGCCGCTGGCGTCC
GAGCGGTCGGCGCCGGGTATGTACGCCGTGCCGCCGCCGCAGCGGCCGTC
GTACACGCCCGCCGCGCCGCCGCCGCCGCCGCCCGCGGAGGAGCGCAGCG
CGGTGCTGGCGCCGCCGGTGCTGCTCTCGCAGCAGAACAGAGGCAAATGA
CACAATAGGAG

Coding sequence (CDS) from alignment at Contig_4:1748023..1748983+

>mRNA_1739 ID=mRNA_1739|Name=jgi.p|Trimin1|64651|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=774bp|location=Sequence derived from alignment at Contig_4:1748023..1748983+ (Tribonema minus UTEX_B_3156 )
ATGGCTGCCAGCCAGCACCTGTACCTGGACGACATTGCTGGCTACAGATC
CAAAACCCATGATGCCTGCCGCTACTTTGAGTCCAAATACAGCAGGCCAG
GGGACGAGATCTCGCAGCAAACGGAAGCCTACATGGCAGATGCGCTGCAG
CAGATCGCCACGGACGTGGAGCGCCTGTCCACTCAGCTCGTGCAGGTGGT
GGATGCGCAGTCCGGGGAGATCGACGGCCTCGCCTCTCGCATCTCCCTCA
TCCAGGCCAACCTGCTGCGCTCGCAGCAGCAGAGCGCCAAGCAGAAGGAG
GTGTCGCTGCGGCTCCCCTCGCAGCCCGCGCCGCAGTACGAGCCGGTGAC
CGTGCTGGAGAGCGTGCGCAGGCGCGCGCAGCAGACGCACGTGCGCGTCC
CCCTGCGCGCGCGCCTTGAGGACCCGTACCCCGCCGCCGACATGCACGCG
GACGCGGACGACTTCGACGCGGCGGGCGCGTTCGACGCCGCCCCCCCCAA
GCGCCGCCTGTCGCGCCACGCCATCAGCGAGATGAGCAGCGTCAGCAGCG
GCGGCCTGCCGAGCCCCGGCTCGACGCACCTGCCCTCAACTTCAAGTTCG
TTCTCGCGGCCGCCGCTGGCGTCCGAGCGGTCGGCGCCGGGTATGTACGC
CGTGCCGCCGCCGCAGCGGCCGTCGTACACGCCCGCCGCGCCGCCGCCGC
CGCCGCCCGCGGAGGAGCGCAGCGCGGTGCTGGCGCCGCCGGTGCTGCTC
TCGCAGCAGAACAGAGGCAAATGA