mRNA_17396 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142942
Unique NamemRNA_17396
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Match: A0A835ZGV4_9STRA (DUF676 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGV4_9STRA)

HSP 1 Score: 144 bits (364), Expect = 6.430e-44
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
Query:    1 PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNTGKTRDGIASGGTRVAEAVREAVATNPSLRYI 219
            PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNTGKTRDGIASGGTRVAEAVREAVATNPSLRYI
Sbjct:    1 PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNTGKTRDGIASGGTRVAEAVREAVATNPSLRYI 73          
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Match: A0A6H5LMX6_9PHAE (DUF676 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMX6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.280e-15
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNTGKTRDGIASGGTRVAEAVREAVATNPSLRYI 219
            P HLVV+ HG+ G+P DL YL+++++R G   +LV +AR N GKT+DG+  GG+R+AE +RE V + PSL  I
Sbjct:   95 PAHLVVLAHGLSGTPEDLTYLKQSLEREGGSEILVHSARRNEGKTKDGVVEGGSRLAEEIREVVQSTPSLSRI 167          
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Match: D7G287_ECTSI (Putative serine esterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G287_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.130e-14
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNTGKTRDGIASGGTRVAEAVREAVATNPSLRYI 219
            P HLVV+ HG+ G+P DL YL+++++R G   +LV +AR N GKT+DG+  GG+R+AE + E V + PSL  I
Sbjct:   63 PAHLVVLAHGLSGTPEDLTYLKQSLEREGGSEILVHSARRNEGKTKDGVVEGGSRLAEEILEVVQSTPSLSRI 135          
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Match: A0A7S3Y223_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y223_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 5.340e-12
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGR---VLVLNARVNTGKTRDGIASGGTRVAEAVREAVATNPSL 210
            P HL+V+ HG+ G+P DL YL+ A++R    R   VLV  AR N  +TRDG+ +GG R+A+ VR  VA +PSL
Sbjct:   43 PTHLIVLVHGLAGTPEDLNYLKGALERGAAARGQRVLVHLARCNHRRTRDGVRAGGRRLAQEVRAVVARHPSL 115          
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Match: A0A7S4DB30_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB30_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 1.990e-11
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGR---VLVLNARVNTGKTRDGIASGGTRVAEAVREAVATNPSL 210
            P HL+V+ HG+ G+P DL YL+ A++R    R   VLV  AR N  +TRDG+ +GG R+A+ VR  VA +PSL
Sbjct:  123 PTHLIVLVHGLAGTPEDLNYLKGALERGAAARGQRVLVHLARCNHRRTRDGVRAGGRRLAQEVRAVVARHPSL 195          
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Match: A0A7S4QHN8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QHN8_9DINO)

HSP 1 Score: 57.8 bits (138), Expect = 1.870e-8
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    4 EHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNTGKTRDGIASGGTRVAEAVR 183
            +HLVV+ HGI G+  DL+ + +A+  A  GR+ VL +RV  G+T DG+A+GGTR+A+ VR
Sbjct:   19 DHLVVLQHGICGTSNDLSNIAQALDIAFPGRLRVLLSRVCEGRTLDGVAAGGTRLAQEVR 78          
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Match: A0A7C9DLV4_OPUST (DUF676 domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DLV4_OPUST)

HSP 1 Score: 52.4 bits (124), Expect = 4.600e-7
Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = 1
Query:    1 PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNT-GKTRDGIASGGTRVAEAVREAVATNPSLRYI 219
            P+HL+V+ HGI GSP D  Y E  +K+      L+  +  NT  KT  GI   G R+AE V++ V    SLR I
Sbjct:   20 PDHLLVLVHGIMGSPSDWIYFEAELKKRLGRNFLIYASSANTFSKTFGGIDVAGKRLAEEVKQVVEKTESLRKI 93          
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Match: UPI000C1D37C0 (putative lipase YDR444W isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D37C0)

HSP 1 Score: 53.9 bits (128), Expect = 1.150e-6
Identity = 33/74 (44.59%), Postives = 41/74 (55.41%), Query Frame = 1
Query:    1 PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNT-GKTRDGIASGGTRVAEAVREAVATNPSLRYI 219
            P+HL+V+ HGI GSP D  Y E  +KR    R L+  +  NT  KT  GI   G R+AE V E V    SL+ I
Sbjct:   86 PDHLLVLVHGIMGSPSDWTYFEADLKRRLGKRFLIYASSCNTYTKTFTGIDGAGKRLAEEVMEIVRNTESLKKI 159          
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Match: A0A813D472_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D472_POLGL)

HSP 1 Score: 53.1 bits (126), Expect = 1.760e-6
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNTGKTRDGIASGGTRVAEAVREAVATNPSL 210
            P HLVV+ HG+ G+  DL  L   +++A    VLV +A  N G+T DG+A+GG R+AE +R   A +P++
Sbjct:   36 PTHLVVLQHGLSGTVADLNRLGAELQQA-CPDVLVHSATSNFGRTTDGVAAGGLRLAEEIRAVAAQHPTV 104          
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Match: A0A813G1M4_POLGL (Hypothetical protein (Fragment) n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G1M4_POLGL)

HSP 1 Score: 53.1 bits (126), Expect = 2.100e-6
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNTGKTRDGIASGGTRVAEAVREAVATNPSL 210
            P HLVV+ HG+ G+  DL  L   +++A    VLV +A  N G+T DG+A+GG R+AE +R   A +P++
Sbjct:   36 PTHLVVLQHGLSGTVADLNRLGAELQQA-CPDVLVHSATSNFGRTTDGVAAGGLRLAEEIRAVAAQHPTV 104          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142942 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A835ZGV4_9STRA6.430e-44100.00DUF676 domain-containing protein (Fragment) n=1 Ta... [more]
A0A6H5LMX6_9PHAE1.280e-1550.68DUF676 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G287_ECTSI1.130e-1449.32Putative serine esterase n=1 Tax=Ectocarpus silicu... [more]
A0A7S3Y223_HETAK5.340e-1249.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DB30_HETAK1.990e-1149.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4QHN8_9DINO1.870e-850.00Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7C9DLV4_OPUST4.600e-741.89DUF676 domain-containing protein (Fragment) n=1 Ta... [more]
UPI000C1D37C01.150e-644.59putative lipase YDR444W isoform X1 n=2 Tax=Olea eu... [more]
A0A813D472_POLGL1.760e-642.86Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813G1M4_POLGL2.100e-642.86Hypothetical protein (Fragment) n=3 Tax=Polarella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_158contigContig_158:185341..185559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142942|gw1.158.15.1
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
KEGG ModuleM00340
KEGG Pathwayko03050,map03050
KEGG koko:K02737
EC3.4.25.1
Descriptionacylglycerol lipase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4372@1|root,KOG4372@2759|Eukaryota
Evalue1.85e-15
Seed ortholog2880.D7G287
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative serine esterase
Ec32 orthologEc-16_002070.1
TranscriptId143264
TrackFilteredModels1
ProteinId142942
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142942gene_17396Tribonema minus UTEX_B_3156 geneContig_158 185341..185559 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17396_1exon_17396_1Tribonema minus UTEX_B_3156 exonContig_158 185341..185559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17396CDS_17396Tribonema minus UTEX_B_3156 CDSContig_158 185341..185559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142942Trimin1|142942|gw1.158.15.1Tribonema minus UTEX_B_3156 polypeptideContig_158 185341..185559 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17396 ID=mRNA_17396|Name=jgi.p|Trimin1|142942|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_158:185341..185559- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCAGAGCACCTTGTCGTCGTGTGCCATGGTATCTTTGGCTCACCCGGAGA
CCTGGCCTACCTCGAGAAAGCCGTCAAGCGGGCAGGCATGGGCAGGGTCT
TGGTGCTGAATGCTAGAGTCAACACGGGCAAAACCAGGGATGGCATCGCT
AGCGGGGGAACGCGGGTGGCGGAAGCTGTCAGGGAGGCTGTCGCCACAAA
TCCCAGCTTGCGTTACATC
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protein sequence of jgi.p|Trimin1|142942

>Trimin1|142942|gw1.158.15.1 ID=Trimin1|142942|gw1.158.15.1|Name=jgi.p|Trimin1|142942|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=73bp
PEHLVVVCHGIFGSPGDLAYLEKAVKRAGMGRVLVLNARVNTGKTRDGIA
SGGTRVAEAVREAVATNPSLRYI
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mRNA from alignment at Contig_158:185341..185559-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17396 ID=mRNA_17396|Name=jgi.p|Trimin1|142942|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_158:185341..185559- (Tribonema minus UTEX_B_3156 )
CCAGAGCACCTTGTCGTCGTGTGCCATGGTATCTTTGGCTCACCCGGAGA CCTGGCCTACCTCGAGAAAGCCGTCAAGCGGGCAGGCATGGGCAGGGTCT TGGTGCTGAATGCTAGAGTCAACACGGGCAAAACCAGGGATGGCATCGCT AGCGGGGGAACGCGGGTGGCGGAAGCTGTCAGGGAGGCTGTCGCCACAAA TCCCAGCTTGCGTTACATC
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Coding sequence (CDS) from alignment at Contig_158:185341..185559-

>mRNA_17396 ID=mRNA_17396|Name=jgi.p|Trimin1|142942|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=219bp|location=Sequence derived from alignment at Contig_158:185341..185559- (Tribonema minus UTEX_B_3156 )
CCAGAGCACCTTGTCGTCGTGTGCCATGGTATCTTTGGCTCACCCGGAGA
CCTGGCCTACCTCGAGAAAGCCGTCAAGCGGGCAGGCATGGGCAGGGTCT
TGGTGCTGAATGCTAGAGTCAACACGGGCAAAACCAGGGATGGCATCGCT
AGCGGGGGAACGCGGGTGGCGGAAGCTGTCAGGGAGGCTGTCGCCACAAA
TCCCAGCTTGCGTTACATC
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