mRNA_17169 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|179332
Unique NamemRNA_17169
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Match: A0A835Z670_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z670_9STRA)

HSP 1 Score: 998 bits (2580), Expect = 0.000e+0
Identity = 484/484 (100.00%), Postives = 484/484 (100.00%), Query Frame = 1
Query:    1 MGIHSDDLWAEEPAGGAKEGGEEPTGLRLREYQLEGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEIPHELRTPANITKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQVCVYVCISKGGYGYVWVWL 1452
            MGIHSDDLWAEEPAGGAKEGGEEPTGLRLREYQLEGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEIPHELRTPANITKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQVCVYVCISKGGYGYVWVWL
Sbjct:    1 MGIHSDDLWAEEPAGGAKEGGEEPTGLRLREYQLEGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEIPHELRTPANITKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQVCVYVCISKGGYGYVWVWL 484          
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE)

HSP 1 Score: 682 bits (1761), Expect = 4.300e-221
Identity = 332/462 (71.86%), Postives = 386/462 (83.55%), Query Frame = 1
Query:  103 EGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEIPHELRTPANITKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRA------TGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQ-------------VCVYVCISKGGY 1431
            EGVNWLLWNWW+ R SILADE+GLGKTIQT  FL  LW +KLT  RGP  IVAPLSLV QWQ E+ TWSPDMN +VYHGN  +R ++RERE+W++ PFV++ DA+ LR AG  KF+++ITT+E+AL++VR+LSR+ W+VLVVDEAHRLKNC SKLFQEL SLPR+H LLLTGTPLQN+TEELWALL+F     F DQ+ F +QFGDLK +SQV  LH++LRP+LLRR+KEDVEKSLPPKEET++EVSLTPVQ+QFY+AIY KNT +LFRGARP + PSLMN+MMELRKCCNHP+LNRGVE+RILSEIP EL T AN+ KQL+DASGKMVLLAKLLPRLQ EGHKVLIFSQMVRCLDLIE++L+        GYKYERLDG+TR+N RTAAVERFNRP F+RF+MLLSTRAGGLGLNLT+ADTVIIYDSDWNPHNDLQ             V VY  +SK  Y
Sbjct:  637 EGVNWLLWNWWNHRSSILADEVGLGKTIQTVGFLDQLWNHKLTNIRGPFCIVAPLSLVAQWQSEIATWSPDMNVIVYHGNGTSRAILREREFWHEEPFVTRADAKKLRAAGRVKFHILITTYEVALKDVRELSRIHWKVLVVDEAHRLKNCGSKLFQELGSLPRDHSLLLTGTPLQNRTEELWALLNFADGHRFFDQQGFKEQFGDLKGSSQVARLHDMLRPYLLRRVKEDVEKSLPPKEETIVEVSLTPVQRQFYRAIYEKNTQFLFRGARPVHAPSLMNIMMELRKCCNHPFLNRGVEERILSEIPDELHTKANVHKQLVDASGKMVLLAKLLPRLQAEGHKVLIFSQMVRCLDLIEDFLKGGMDGEGPGYKYERLDGNTRANMRTAAVERFNRPQFKRFVMLLSTRAGGLGLNLTTADTVIIYDSDWNPHNDLQAQARAHRIGQTKAVMVYRLLSKKTY 1098          
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Match: A0A4D9D793_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D793_9STRA)

HSP 1 Score: 615 bits (1586), Expect = 7.480e-201
Identity = 290/439 (66.06%), Postives = 366/439 (83.37%), Query Frame = 1
Query:   79 LRLREYQLEGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEIPHELRTPANITKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQ 1395
            L+LR+YQL G+ WL++N++ +RPSILADEMGLGKTIQT AFL  L+R +   NRGP +IVAPLSL+NQWQGE  TW+PD+N +VYHGN ++R V+RE E+ ++ P++  E+A  L++  + KF++++TT+E  +++++ LSR+ W+VLVVDEAHRLKN  S+LF EL +LPR+HC+LLTGTPLQNKTEELWALL+F    HF DQ  F +++GDLK+ASQV  LH +L+PFLLRRIKEDVEKSLPPKEET++EVSLTP+Q++FY AIY +NT++LF+ ++ S  PSLMNVMMELRKCCNH YLNRGVE+RILSEIP   RTP N+  QL+  SGKMVLL KLLPRL++EGHKVLIFSQMVR LDL+E+Y+R  G+ YERLDG+ ++  R+AAV RFN P   RF+MLLSTRAGGLGLNLT+ADTVIIYDSDWNPHNDLQ
Sbjct:  874 LQLRDYQLTGLKWLIFNYYQRRPSILADEMGLGKTIQTMAFLTQLYRTQEGKNRGPFIIVAPLSLINQWQGEAGTWAPDLNVLVYHGNTDSRQVLREYEFHFNEPYIRAEEAHYLKQRNILKFDILLTTYETVIKDIKILSRIMWKVLVVDEAHRLKNPASRLFMELRTLPRDHCVLLTGTPLQNKTEELWALLNFADPVHFGDQAGFSREYGDLKDASQVENLHNMLKPFLLRRIKEDVEKSLPPKEETIVEVSLTPLQRKFYMAIYDRNTAFLFKESKASMAPSLMNVMMELRKCCNHAYLNRGVEERILSEIPLPQRTPENLHHQLVSCSGKMVLLDKLLPRLKKEGHKVLIFSQMVRVLDLVEDYMRYVGHSYERLDGTKKATERSAAVVRFNNPALNRFVMLLSTRAGGLGLNLTAADTVIIYDSDWNPHNDLQ 1312          
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Match: A0A1E7EZR5_9STRA (SNF2_N-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EZR5_9STRA)

HSP 1 Score: 567 bits (1462), Expect = 8.960e-198
Identity = 275/445 (61.80%), Postives = 350/445 (78.65%), Query Frame = 1
Query:   76 GLRLREYQLEGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEIP-----HELRTPANITKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQ 1395
            G RLR Y+   VNWLL+NWW++R  ILADEMGLGKTIQ+  F+  L     T  RGP LIVAPLSL+ QWQ E  TW+PD+N V+YHG+A+ARD + + ++++   F+SK  A  LR+  V KF+++ITT+E+ ++++   +++ W+ L+VDEAHRLKN  SKLF+EL ++PR++CLLLTGTPL N TEELWALLHF +K  FN +  FL++FG L+ + QV ELH +L+P+LLRR+KEDVEKS+PPK ET++EVSLTP Q+++YKAIY +NTS+LF+G++PSN+PSLMNVMMELRKCCNHP+L RGVED+IL+E        EL       +QL+ ASGKMVL+ KLLP+L   GHKVLIFSQMVR LDL+EEYL+   YKYERLDGST S+ RTAAV RF R  ++RF+MLLSTRAGGLGLNLT+AD VIIYDSDWNP NDLQ
Sbjct:    1 GFRLRSYRSR-VNWLLFNWWNQRSCILADEMGLGKTIQSVGFIKLLQDLPTTGLRGPFLIVAPLSLIGQWQSESKTWAPDLNVVLYHGSADARDFVIKNDFFFSDQFMSKTTATKLRKQHVTKFHILITTYEVVMKDIDVFTKIKWKALIVDEAHRLKNSNSKLFEELLTVPRDYCLLLTGTPLANATEELWALLHFANKSVFNSKDDFLEKFGQLENSVQVQELHSILKPYLLRRVKEDVEKSMPPKTETILEVSLTPGQKKYYKAIYERNTSFLFKGSKPSNSPSLMNVMMELRKCCNHPFLIRGVEDKILAEAALQVNSSELDYVKIFEEQLVKASGKMVLIDKLLPKLFANGHKVLIFSQMVRVLDLLEEYLKLKRYKYERLDGSTSSSSRTAAVSRFMRKSYQRFVMLLSTRAGGLGLNLTAADIVIIYDSDWNPQNDLQ 444          
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Match: A0A7S4QWE4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QWE4_9STRA)

HSP 1 Score: 582 bits (1499), Expect = 2.520e-192
Identity = 281/455 (61.76%), Postives = 357/455 (78.46%), Query Frame = 1
Query:   67 EPTGLRLREYQLEGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEI--------PHELRTPANIT----KQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQ 1395
            +  G RLR YQLEGVNWLLWNWW++R  ILADEMGLGKTIQ+  FL  L R+  T  RGP LIVAPLSL+ QWQ E + W+PDMN ++YHG+A++RD + ++E++Y   F+ K  A  LRR  + KF+V+ITT+E+ L++   LS++ W+ L+VDEAHRLKN +S+LF EL+++PR+ C+LLTGTPLQN TEELWALLHF     F+ +  F+ +FG L +A QV ELH VL+P+LLRR+KEDVEKSLPPKEET++EV+LTP+Q+ +YKAIY +NTS+LF+GA+PSN PSLMN+MMELRKCCNHP+L RG E+RIL++           +  T  + T    +QL+ +SGKMVLLAKLLP+L   GHKVLIFSQMVR LDL+EE LR   Y+YERLDGST ++ R AAV+RF+R  F+RF+MLLSTRAGGLGLNLT+ADTVII+DSDWNP NDLQ
Sbjct:  665 DENGYRLRAYQLEGVNWLLWNWWNRRSCILADEMGLGKTIQSVCFLQELQRHPNTKVRGPFLIVAPLSLIAQWQSETEAWAPDMNVILYHGSADSRDFLVKQEFYYTDQFLPKTTAVKLRRQHITKFHVLITTYEVVLKDAAVLSKIRWKALIVDEAHRLKNPKSRLFVELATVPRDFCVLLTGTPLQNSTEELWALLHFSDPVAFSSKEAFVDKFGQLTDARQVSELHSVLKPYLLRRVKEDVEKSLPPKEETILEVTLTPIQKTYYKAIYERNTSFLFKGAKPSNAPSLMNIMMELRKCCNHPFLIRGAEERILADAITTAEGKSSADNSTSTDYTTLTAEQLVKSSGKMVLLAKLLPKLYDGGHKVLIFSQMVRVLDLLEELLRMKHYRYERLDGSTSASSRAAAVDRFHRKSFQRFVMLLSTRAGGLGLNLTAADTVIIFDSDWNPQNDLQ 1119          
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Match: B8CAT3_THAPS (Chromodomain-helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAT3_THAPS)

HSP 1 Score: 560 bits (1444), Expect = 5.080e-192
Identity = 271/432 (62.73%), Postives = 343/432 (79.40%), Query Frame = 1
Query:   79 LRLREYQLEGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILS--EIPHELRTPANIT-KQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYD 1365
            L+LR YQLEGVNWLLWNW+++R  ILADEMGLGKTIQ+  FLH L R     NRGP L+VAPLSLV QW  E   W+PDMN VVYHG+A+ARD + + E++Y   F SK  A+ L+R  + KF V+ITT+E+ L++V  LS++ W+ L+VDEAHRLKN +++LF++L+S+PR+ CLLLTGTPLQN TEELWALLHFC    F  + +F +QFG L+ A QV  LH VLRP+LLRR+KEDVEK+LPPKEET++EV+LTP+Q+ FYKAIY +NTS+L++G++PSN PSLMN+MMELRKCCNHP+L RG EDRI+   E  +     A +T +QL+ +SGK VLL+KLLP+L   GHKVLIFSQMVR LDL++E L+   Y+YERLDGST ++ R AAV+RF R  F+RF+MLLSTRAGGLGLNLT+ADTVII+D
Sbjct:  261 LKLRAYQLEGVNWLLWNWYNRRSCILADEMGLGKTIQSIGFLHELQRVPKAKNRGPFLVVAPLSLVAQWASESKEWAPDMNVVVYHGSADARDFLVKHEFYYTDQFSSKTVAQQLKRKHITKFQVLITTYEVVLKDVNVLSKIKWKALIVDEAHRLKNIKARLFEDLASVPRDFCLLLTGTPLQNSTEELWALLHFCDPKTFGSRDEFTEQFGQLENADQVANLHTVLRPYLLRRVKEDVEKALPPKEETILEVTLTPIQKTFYKAIYERNTSFLYKGSKPSNAPSLMNIMMELRKCCNHPFLIRGAEDRIIGNDETAYRPIDYAKLTGEQLVKSSGKFVLLSKLLPKLYDGGHKVLIFSQMVRVLDLLQELLQLKHYRYERLDGSTSASSRNAAVDRFKRESFKRFVMLLSTRAGGLGLNLTAADTVIIFD 692          
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Match: A0A7S1B9C3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B9C3_9STRA)

HSP 1 Score: 577 bits (1488), Expect = 9.210e-188
Identity = 281/451 (62.31%), Postives = 358/451 (79.38%), Query Frame = 1
Query:   73 TGLRLREYQLEGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFV-SKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEI--------PHELRTPANI-TKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQ 1395
            T  +LR YQLEGVNWLLWNWW  R  ILADEMGLGKTIQT A L  L +   T  RGP L+VAPL+L+ QW  EV  W+PD N VVYHG+A+AR  I ++E++++A  V SK  A  L+R  V KFN+++TT+E+ L+++  LS++ W+ L+VDEAHRLKN +S+LF+EL+S+PR+ CLLLTGTPLQN TEELWALL+F + D F+ +  F ++FG LK++ QV +LH +L+PFLLRR+KEDVEKSLPPKEET++EV+LTP Q+ +YKAIY KNT++LF+G++ SN PSLMN+MMELRKCCNHP+L RG+EDRIL E         P +   P+ I ++QL+ +SGKMV+L KLLP+L+Q GHKVLIFSQMVRCLDL++E+LR   YK+ERLDGST +  R AAV RFN+P  +RF+MLLSTRAGGLGLNLTSA+TVII+DSDWNP NDLQ
Sbjct:   85 TNFKLRGYQLEGVNWLLWNWWGNRSCILADEMGLGKTIQTVATLVQLDKMDATQVRGPFLMVAPLTLLQQWASEVAVWAPDFNTVVYHGSADARAYIVQQEFYWNAGSVGSKPQATRLKRQSVTKFNLLLTTYEVVLKDIHVLSKITWKALIVDEAHRLKNTQSRLFRELNSVPRDWCLLLTGTPLQNSTEELWALLNFANGDAFSSKETFCEKFGQLKQSQQVKDLHGMLKPFLLRRVKEDVEKSLPPKEETILEVTLTPTQKAYYKAIYEKNTNFLFKGSKKSNAPSLMNIMMELRKCCNHPFLIRGIEDRILEEAAVLAHKANPDQPTDPSAIFSEQLVKSSGKMVILDKLLPKLKQGGHKVLIFSQMVRCLDLLQEFLRVKRYKFERLDGSTGAGARAAAVARFNQPRHDRFVMLLSTRAGGLGLNLTSANTVIIFDSDWNPQNDLQ 535          
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Match: A0A1Z5JDN6_FISSO (Chromodomain-helicase-DNA-binding protein 6 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDN6_FISSO)

HSP 1 Score: 578 bits (1489), Expect = 1.920e-184
Identity = 278/453 (61.37%), Postives = 357/453 (78.81%), Query Frame = 1
Query:   76 GLRLREYQLEGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEIPHELRTPAN-------------ITKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQ 1395
            G RLR YQLEGVNWLL+NWW+KR  ILADEMGLGKTIQ+ AFL  L     T  R P LIVAPLSLV QWQ E+ +W+PD+N ++YHG+A+AR+ +   E+++   F+ + DA  L++  V KF+V+ITT+E+ L++V  +S++ W+ L+VDEAHRLKN +S+LF++L+++PR+ CLLLTGTP+ N TEELWALL F + D F+D+  FL++FG++ +A QV ELH +L+P+LLRR+KEDVEKSLPPKEET++EVSLTP+Q+ FYKAIY +NTS+LFRGA+PSN PSLMNVMMELRKCCNHPYL +G EDRIL+E   ++++ A+               +QLI +SGKMVL+ KLL +L   GHKVLIFSQMVR LDL+EE LR   Y+YERLDGST S+ RT AV+RF +  F+RF+MLLSTRAGGLGLNLT+AD VII+DSDWNP NDLQ
Sbjct:  584 GFRLRGYQLEGVNWLLFNWWNKRSCILADEMGLGKTIQSAAFLRELQTQSATQVRAPFLIVAPLSLVGQWQSELMSWAPDLNVLLYHGSADAREFLVAHEFYFTDQFIPRPDAIKLKKQHVTKFHVLITTYEVILKDVHMISKIKWKALIVDEAHRLKNSKSRLFEQLANVPRDFCLLLTGTPIANATEELWALLSFANPDVFSDKESFLEKFGEMTDAEQVNELHSLLKPYLLRRVKEDVEKSLPPKEETILEVSLTPIQKTFYKAIYERNTSFLFRGAKPSNAPSLMNVMMELRKCCNHPYLIKGAEDRILAEAAAKMKSAADNDGEPTIVDYSRLFGEQLIKSSGKMVLMEKLLQKLFDGGHKVLIFSQMVRVLDLLEELLRIKKYRYERLDGSTSSSSRTHAVDRFTKKSFQRFVMLLSTRAGGLGLNLTAADVVIIFDSDWNPQNDLQ 1036          
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Match: A0A482SGI9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SGI9_9ARCH)

HSP 1 Score: 531 bits (1368), Expect = 3.620e-184
Identity = 257/434 (59.22%), Postives = 338/434 (77.88%), Query Frame = 1
Query:  175 GKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEIP-HELRTPANITKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQ-------------VCVYVCISKGGYG 1434
            GKTIQT  FLH L     T   GP L++APLSLV+QWQ E+ TWSPDMN V+ HGN EAR+ I   E++Y  P+V+K +A  L++A V KF++++TTFE+A++E++ L ++ W+V+++DEAHRLKN  ++LF  L+++  EH +LLTGTPLQNKTEELWALL+F  +  F D + F+++FGDLK+ASQV  LHE+LRP+LLRRIKEDVEKSLPPKEET++EV+LT VQ++FY+AI+ KNT YL+RG + SN P L+NVMMELRKCCNHPYL +GVE+R+++E+P  + + PA + K LI++SGK+VLL KLLPRLQ EGHKVLIFSQMVR L+++E++L+  GY YERLDG++R+  R  AV+RF +P   RFIMLLST+AGGLGLNL +ADTVIIYDSDWNP NDLQ             V VY  +++  YG
Sbjct:    5 GKTIQTICFLHQLRYMPTTNINGPFLLIAPLSLVDQWQSEIATWSPDMNTVLLHGNVEARNNILTNEFYYQEPYVTKTEAISLKKANVCKFHILLTTFEVAVKEIKTLMKIPWRVMIIDEAHRLKNPTARLFSTLATINAEHTVLLTGTPLQNKTEELWALLNFAERKRFADMKDFMRKFGDLKDASQVASLHEMLRPYLLRRIKEDVEKSLPPKEETIVEVALTSVQKRFYRAIFEKNTVYLYRGLKASNQPCLINVMMELRKCCNHPYLVKGVEERVIAELPPDQAKEPAVLYKSLIESSGKLVLLDKLLPRLQSEGHKVLIFSQMVRVLNILEDFLKFRGYLYERLDGTSRAAERKEAVDRFCKPSMNRFIMLLSTKAGGLGLNLVAADTVIIYDSDWNPQNDLQAQARAHRIGQTKSVMVYRLLTRKTYG 438          
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Match: A0A421GIR5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GIR5_9STRA)

HSP 1 Score: 552 bits (1423), Expect = 3.910e-180
Identity = 274/443 (61.85%), Postives = 346/443 (78.10%), Query Frame = 1
Query:   67 EPTGLRLREYQLEGVNWLLWNWWHKRPSILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVDTWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFNVMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGELHEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSYLFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEIPHELRTPANITKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATGYKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADTVIIYDSDWNPHNDLQ 1395
            E   L LR YQLEG+NWLLWNW+++RPSILADEMGLGKTIQT +FL+ L  + +   RGP LIVAPLSL+ QWQ E +TW+  MN VVYHGN+ +R++IR+ E++Y    +  +  +  R      FN+++TT+E+A++++  LS++ W+ LVVDEAHRLKN  S+L +++ SL R+HC+LLTGTPLQNKTEELWALL+F     F     FL++FGDL EA QV +LH++L+P+LLRR+KEDVEKSLPPKEET+IEV LTPVQ+Q+Y+AIY +NTS+L RG  P N P+LMNVMMELRKCCNHPYLN GVE+ IL+E    L T A   + ++   GKMVL+ KLLPRL   GHKVLIFSQMVR LD+IE+YLR  GY YERLDG+ R N R AAV+RF +P ++RF+MLLST+AGGLGLNLT+ADTVII+DSDWNP NDLQ
Sbjct:  122 EDQSLSLRAYQLEGLNWLLWNWYNERPSILADEMGLGKTIQTLSFLNLLRDDPILNIRGPFLIVAPLSLIVQWQNECETWTT-MNCVVYHGNSASREIIRDFEFYYLDDNLRPDKKKTYR------FNILVTTYEVAIKDIGILSKIHWRCLVVDEAHRLKNQSSRLVEQMRSLRRDHCVLLTGTPLQNKTEELWALLNFLDGKSFPSVSDFLEKFGDLHEAQQVADLHKMLKPYLLRRVKEDVEKSLPPKEETIIEVELTPVQKQWYRAIYERNTSFLNRGGNPRNVPNLMNVMMELRKCCNHPYLNNGVEE-ILNE---GLATDAQRHEMMVKCCGKMVLIDKLLPRLSDGGHKVLIFSQMVRVLDIIEDYLRYMGYLYERLDGNIRGNDRQAAVDRFVKPEYKRFVMLLSTKAGGLGLNLTAADTVIIFDSDWNPQNDLQ 553          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|179332 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z670_9STRA0.000e+0100.00SNF2 family N-terminal domain-containing protein n... [more]
A0A6H5KVU7_9PHAE4.300e-22171.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D793_9STRA7.480e-20166.06Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1E7EZR5_9STRA8.960e-19861.80SNF2_N-domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S4QWE4_9STRA2.520e-19261.76Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B8CAT3_THAPS5.080e-19262.73Chromodomain-helicase (Fragment) n=1 Tax=Thalassio... [more]
A0A7S1B9C3_9STRA9.210e-18862.31Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A1Z5JDN6_FISSO1.920e-18461.37Chromodomain-helicase-DNA-binding protein 6 n=2 Ta... [more]
A0A482SGI9_9ARCH3.620e-18459.22Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A421GIR5_9STRA3.910e-18061.85Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_190contigContig_190:224948..231507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|179332|e_gw1.190.24.1
DescriptionSNF2 family N-terminal domain
COG categoryK
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0553@1|root,KOG0384@2759|Eukaryota,2XBF7@2836|Bacillariophyta
Evalue5.87e-207
Seed ortholog2850.Phatr16262
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionChromodomain helicase DNA-binding and AP2/ERF domain protein
Ec32 orthologEc-08_003430.1
TranscriptId179654
TrackFilteredModels1
ProteinId179332
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179332gene_17169Tribonema minus UTEX_B_3156 geneContig_190 224948..231507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179332Trimin1|179332|e_gw1.190.24.1Tribonema minus UTEX_B_3156 polypeptideContig_190 224948..231507 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17169_7exon_17169_7Tribonema minus UTEX_B_3156 exonContig_190 224948..225176 -
exon_17169_6exon_17169_6Tribonema minus UTEX_B_3156 exonContig_190 226411..226649 -
exon_17169_5exon_17169_5Tribonema minus UTEX_B_3156 exonContig_190 227324..227422 -
exon_17169_4exon_17169_4Tribonema minus UTEX_B_3156 exonContig_190 227783..227932 -
exon_17169_3exon_17169_3Tribonema minus UTEX_B_3156 exonContig_190 229340..229591 -
exon_17169_2exon_17169_2Tribonema minus UTEX_B_3156 exonContig_190 230087..230473 -
exon_17169_1exon_17169_1Tribonema minus UTEX_B_3156 exonContig_190 231409..231507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17169CDS_17169Tribonema minus UTEX_B_3156 CDSContig_190 231409..231507 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17169 ID=mRNA_17169|Name=jgi.p|Trimin1|179332|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1455bp|location=Sequence derived from alignment at Contig_190:224948..231507- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATTCACAGCGACGACCTCTGGGCGGAGGAGCCCGCGGGGGGTGC
GAAAGAGGGCGGGGAGGAGCCCACGGGGCTGCGCCTGAGGGAATACCAGT
TGGAGGGCGTGAACTGGCTGCTGTGGAACTGGTGGCACAAGCGCCCCTCC
ATCCTCGCCGACGAAATGGGCCTGGGCAAGACCATACAGACCACCGCCTT
CCTCCATGCCCTCTGGCGCAACAAGCTCACCGCCAACAGGGGACCCCACC
TCATTGTCGCCCCCCTGAGCCTGGTGAACCAGTGGCAGGGGGAGGTGGAC
ACTTGGTCGCCTGACATGAATGCCGTGGTGTATCACGGCAACGCGGAGGC
GCGGGATGTGATACGCGAGCGCGAGTGGTGGTACGACGCGCCGTTTGTGA
GCAAGGAGGACGCGCGCGACCTGCGGCGCGCGGGCGTGCCCAAGTTCAAC
GTCATGATCACCACCTTCGAGATCGCGCTGCGGGAGGTGCGCGACCTGAG
CCGCGTCGCCTGGCAAGTACTCGTGGTGGACGAGGCGCACCGGCTCAAGA
ACTGCGAGAGCAAGCTGTTCCAGGAGCTGAGCTCGCTGCCGCGCGAGCAC
TGCCTCCTGCTGACCGGCACGCCGCTACAGAACAAGACGGAGGAGCTGTG
GGCGCTGCTGCACTTCTGCCACAAGGACCACTTCAACGACCAGCGACAGT
TCCTGCAGCAGTTCGGGGACCTCAAGGAGGCGTCGCAGGTGGGCGAGCTG
CATGAGGTGCTGCGGCCATTCCTGCTGCGCCGCATCAAAGAGGACGTAGA
GAAGAGCCTGCCCCCCAAGGAGGAGACGGTGATTGAGGTGTCACTCACGC
CCGTCCAGCAGCAATTCTACAAGGCCATATACGCTAAGAACACGTCATAC
CTGTTCCGCGGAGCGCGCCCCAGCAACACGCCGTCGCTGATGAACGTCAT
GATGGAGCTGCGCAAGTGCTGCAACCACCCCTACCTGAATCGCGGCGTGG
AGGACCGCATCCTGAGCGAGATCCCGCACGAGCTGCGCACCCCCGCCAAC
ATCACCAAGCAGCTCATAGATGCCAGCGGCAAGATGGTTCTGCTGGCCAA
GCTGCTGCCGCGCCTGCAGCAGGAGGGGCACAAGGTGCTCATCTTCAGCC
AGATGGTGCGCTGCCTGGACCTCATTGAGGAGTACCTCAGGGCCACGGGC
TACAAGTACGAGCGCCTCGATGGCAGCACGCGGAGCAACTTCCGCACAGC
GGCGGTGGAGCGCTTCAACCGTCCGCACTTTGAGCGCTTCATCATGCTCC
TCAGCACGCGCGCGGGAGGGCTGGGGCTCAACCTGACGAGCGCTGACACG
GTCATCATATACGACTCCGACTGGAACCCCCACAACGATCTACAGGTATG
TGTGTATGTGTGCATCAGTAAAGGGGGGTATGGCTATGTATGGGTATGGT
TATGA
back to top

protein sequence of jgi.p|Trimin1|179332

>Trimin1|179332|e_gw1.190.24.1 ID=Trimin1|179332|e_gw1.190.24.1|Name=jgi.p|Trimin1|179332|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=485bp
MGIHSDDLWAEEPAGGAKEGGEEPTGLRLREYQLEGVNWLLWNWWHKRPS
ILADEMGLGKTIQTTAFLHALWRNKLTANRGPHLIVAPLSLVNQWQGEVD
TWSPDMNAVVYHGNAEARDVIREREWWYDAPFVSKEDARDLRRAGVPKFN
VMITTFEIALREVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREH
CLLLTGTPLQNKTEELWALLHFCHKDHFNDQRQFLQQFGDLKEASQVGEL
HEVLRPFLLRRIKEDVEKSLPPKEETVIEVSLTPVQQQFYKAIYAKNTSY
LFRGARPSNTPSLMNVMMELRKCCNHPYLNRGVEDRILSEIPHELRTPAN
ITKQLIDASGKMVLLAKLLPRLQQEGHKVLIFSQMVRCLDLIEEYLRATG
YKYERLDGSTRSNFRTAAVERFNRPHFERFIMLLSTRAGGLGLNLTSADT
VIIYDSDWNPHNDLQVCVYVCISKGGYGYVWVWL*
back to top

mRNA from alignment at Contig_190:224948..231507-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17169 ID=mRNA_17169|Name=jgi.p|Trimin1|179332|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6560bp|location=Sequence derived from alignment at Contig_190:224948..231507- (Tribonema minus UTEX_B_3156 )
ATGGGCATTCACAGCGACGACCTCTGGGCGGAGGAGCCCGCGGGGGGTGC GAAAGAGGGCGGGGAGGAGCCCACGGGGCTGCGCCTGAGGGAATACCAGG TGCGTTGAGCACTGTTGCCTGGGTTGCGGGATAGGGTTAGGACTAGGGGT AGGGGGTAGGGGGGGGAGGAGTCCATGGGGCTGCGCCTGAGGGAAAACCA GGTACGTTGAGCACTGTTGCTTGCTTATGGTGGATGGGTAGGTATGCATC ATTGTGTATGTTATATGTATGTACATAGTGCACGGGGCTGCGCCTGAGGG AGTAGACTACCAGGTACGTTGAGCACTGCTTGTGCTCATGGTCGATGGGT AGGTATGCATCATTGTGGTAGGTTACATATAAAAGTATGTATGTATGGCG CATGTCAGGTATGCTGGGCGTTAGTCATGTGGTGGGTGAAGATCGGCGAC TGGGCATATCAGATGCAAGTGGTTTTGCTCTCACCCAAGCTTGCAGTAGG CTCACAATTGGTGCCGCCTTGCCATTATCATTGCTCTACAGCTGGAGGGC GCGAACTGGCTCTGGTGCTCACACACCTGTCGTGCTTTTGCCGCCAGATC ATCATTACCGCCATCAGTATCACCACCAGCACCATTGCATCTGACATCCA CTTCACTCTGATGCCACCTGATCATCTCTTTCTCTACAGCTGGAGGGCGT GAACTGGCTGCTGTGGAACTGGTGGCCCAAAACAAGAGTCCCTCACTTCT CTCTCATTAGCCTTTGACCCGTGAACATCCATATTGTATATTCTTACCAC CGCGATCATCATCACCGCCATCACCACCATCACTAATCGTCACCACCGCC TTCACTCTGCCGCTGGAGGGCGTGAACTGGCTGCTGTGGAATAGGTGGCA CAACCGCCCCTTCCCTTCTCTCTCATCACACCTATGACCTTGAACAATTA TGTCACAACATGTCACCCATGCCATACACACACAGCTCACAGTCACTCAT CCCAAATAATCGTCACCGCCAAATCGCTCTACAGTTGGAGGGCGTGAACT GGCTGCTGTGGAACTGGTGGCACAAGCGCCCCTCCATCCTCGCCGACGAA ATGGGCCTGGGCAAGACCATACAGACCACCGCCTTCCTCCATGCCCTCTG GCGCAACAAGCTCACCGCCAACAGGGGACCCCACCTCATTGTCGCCCCCC TGAGCCTGGTGAACCAGTGGCAGGGGGAGGTGGACACTTGGTCGCCTGAC ATGAATGCCGTGGTGTATCACGGCAACGCGGAGGCGCGGGATGTGATACG CGAGCGCGAGTGGTGGTACGACGCGCCGTTTGTGAGCAAGGAGGACGCGC GCGACCTGCGGCGCGCGGGCGTGCCCAAGTTCAACGTCATGATCACCACC TTCGAGATCGCGCTGCGGGAGGTGAGCACTAGAATTGGCGTGGGGACAGG CTCAAGATCCGGGTTAAATGTAGACTAACGTCATGATCACCACCTTTGAG GTTCAATGCCATGCTCGCCACCTTTGAGGTTGCGCTGCGGGAGGCGAGGG TCATGAAAATAGGGCTAGATCAAGTTCAGCTTTCAAACGTCAAGAGATTG AGGTTACTTAGTTCAAGTTTTTGACCGTCATGATCACCACCTTTGAAACG CGCTGCGGGAAGTGAGCGTGACAGGATTGGAATAGGGTCGGGCATTGAGA ACAGGGTCATGCTTGAGGTCCTGGTCAGATCAAGTGTAACGTAATGATCG CCACGTTTGGGATGTGTTGACGGAGGCGACAGCAGTCTGCTTATTCACAC CTGACGCTATCACGATTAGCAAGTACGAGGGGTGGACGAGGCGCACCGTG AGAACTTCATCATACTGTGACTCTCCACATCTTGACATTTCATCTGGTGA CTTGCCACCACTGCAGGTGCGCGACCTGAGCCGCGTCGCCTGGCAAGTAC TCGTGGTGGACGAGGCGCACCGGCTCAAGAACTGCGAGAGCAAGCTGTTC CAGGAGCTGAGCTCGCTGCCGCGCGAGCACTGCCTCCTGCTGACCGGCAC GCCGCTACAGAACAAGACGGAGGAGCTGTGGGCGCTGCTGCACTTCTGCC ACAAGGACCACTTCAACGACCAGCGACAGTTCCTGCAGCAGTTCGGGGAC CTCAAGGAGGCGTCGCAGGTGCGGCAGCTGGCTCATGGTTCAAGTAGGGT GTGAAGTAGGTCTTGAAGTATGTAGGAGAAAAGTATCATAAATGCATGCT CCTCAAAGAGGCGTTGCAGGTGCGGGGCTGTGCTAGGTGTTGAAGTGGGT CGTGAAGCATGTAGAAGTGTTATGCATGCACAGCAAGGAGGCGTCGCAGC TGCGCGTGCAGGGCTGTGCTAGGTCTTGAAATAGGTCTTGAAGTATACAC ACCTTCTTGGGTGAGAGCAGGAGCCATGGCCAGGATCACGGGTGCTGCGG CTGCACTTCTGGCAATGAGCACACGAAGCCGCAGCACCTGCGGCAGGTTG AGAGCGGGGAACATGCGTCACAATTGCACTTCGGGGACCTCAAGGAGGCG TCGCAGGTGCGGCTCACTTGTGATTCAACTAGGCCTTGAAGTAGAAGTAT ATGGAAGTGCACAGCAAGGGCTCGGGGGCAGAACCGGAACTCTGAGCAGG AACCCTGTTACCTAAACCTAACCTCAAATCCAACCCATATGCACAGCAAA AGTGGGGGCACAACCTTAGGGGGTAAGGGTTCGGGTTAGAATGAGGCGCA GGGCAGGATTACAGCTACAGATGCAGCACAAATAGTCGCAGATCCAGCGG CAGTTTGAGAACTGTAAGCACGAGTCATGTCGGCATTGCGACTGCTCAGA CATGCATTGTGTTTGTGGCGCCCTCAGCACTAACAGATTACATCACCTGC GCTGCCTACTGTTTATATGGAAGCAGTTGGGGACGCTGCAACGAAGGGCT GTGGCCATACTTGCTGCTTTGAAAGCGCTGATGTTGTGATCATTGCGCAC TTTTCGTCCGCTCAAAAGCATGGTATAGTATGTTCATGGTGGGAACTCAA TGCATATGCAAGCACCTGTGCTGCGCCACGGTACTCACCAAAAACAGGTG GGGGAGCTGCATGAGGTGCTGCGGCCATTCCTGCTGCTTTAAACACGCCG GCGCTCTGGCCGTTGCGCACTTTGCAGTTGCTCAGACGCACATCATGTTG TTGGCACGCTTGACACGAAACCAATCCCATGTGCTTCGTAATGTCACTCA TGACAGCAGGTGGGGGAGCTGCATGAAGTGCCGCGGCCATTCCTGCTGCT TTTGAAGCACTGGTACTGTGGTCATTACGTACTTTGCATTTGCACAAGCA CACATCATAATGTTGGCGCATTCAACACGAAACCAGTCACTTCGCGCAAC ATCGCTGATGAAAACAGGTGGGGGAGCTGCACGAAGTGCTGCGGCCATAG CTGCTGCTTCAAACACATCGGCGCCATGGCCGTTGCGCACACTGCAGTGG CTCACACGCACATCATAATGTTGGCACGCTCCACACAAAACCAATCATTT TGCGCAACGCTCTCTGTGAAAACAGGTGGGCGAGCTGCATGAGGTGCTGC GGCCATTCCTGCTGCGCCGCATCAAAGAGGACGTAGAGAAGAGCCTGCCC CCCAAGGAGGAGACGGTGATTGAGGTGTCACTCACGCCCGTCCAGCAGCA ATTCTACAAGGCCATATACGCTAAGGTAAGCGCGTGTGCATGGTGGATGC AGGCGAACGCGTGTTGGATGTATTTTGTGTGACTCTGATGATGGACTGAA GCGATTCATGAGCATTGATGATGGACTGAAGCGCTGCACCCGTGGCACGC ATGATTTGAATGTATGCCCAAGTGGAGGTATATGACATGCATAATATTAT CTACTACCGTACTGATAGTGTATATCTGATACTGCGCGCTTGAGACAACT GCATGCAGCATTTAACCCGCAACACAGCAGGTGGTGAACGGCGATCATGC ACACATATCCAGGTCACACATGTGTCTCACGCTGCGCTGCCTCTGTCCCT TGCTTGTGTGCATGATGTGCTGTGTCATGGCTCAGAACACGTCATACCTG TTCCGCGGAGCGCGCCCCAGCAACACGCCGTCGCTGATGAACGTCATGAT GGAGCTGCGCAAGTGCTGCAACCACCCCTACCTGGTGAGTGTTTGGGGCT AGGGTTAGGGTTAGGGTTAGGGCAACAGATTGAAGCAGGCTTGTGTGGCA GAGTCAATGAATTGTGTATGAGTGGTGGTTGGAACTGAAGAAATGCACAG TGTTTACACTCTTTTTCCAGTCCAGTTTACACTCTTTTTCCACCCCTACC TGGTGAGCGGGCTTGTGTGGCAGACAGTATGTACATATGCTTTGAAACAT ATATGTGTTGTGTTGCTCACAGTAGAACTCCGTAAGCTCAGCAAGATCCT CTTGTCAGTTGTGCAGGGTGCCTGTTGATGCCAAGTTGGCGGCTTCAAGA CATGCATGTTGTTTGCTGACATGCCCTTGCATCTGCACTTGCAAGGGTTA GGGTTTGCGTGCTGTGTGGCATTGCTCAACAGGACCGCGGCCTGAAGGAT CGCATCCTCACTGAGACTCCCCATCAGCTGCGCATGCACCGCCGCTGATT ACATACTCAACTAGCTTACCCTCACAATAGCGGCCTCAACACATGCATGT AGTGAGAGTGTGTGCTGACAATTCGAGTGCCTGTATTTGCACCACACCGA CACTGTCGTGTGACACGGCTCAACAGAACCGCAGCATGTTCTGAGCGTGG GCTGACACTCCCTGTGTTTGCATTTGCACCAACTATGTCGTGTGACATTG CTCAACAGAATCGCGGCGTGGAGGACCGCATCCTGAGCGAGATCCCGCAC GAGCTGCGCACCCCCGCCAACATCACCAAGCAGCTCATAGATGCCAGCGG CAAGATGGTTCTGCTGGCCAAGCTGCTGCCGCGCCTGCAGCAGGAGGGGC ACAAGGTGCTCATCTTCAGCCAGATGGTGCGCTGCCTGGACCTCATTGAG GAGTACCTCAGGGCCACGGGCTACAAGTACGAGCGCCTCGATGGCAGGTC AGTTGAAGTTGGAATGTTGAAGATTTGTACATGTGTGTGACCTAATTGGG GTGTGAAGGTTGCGGTCTTGATGGCGTTCTTGAGGAATGATCCATCAAAA TGGTAAGTTGCGCAATCAGCACTATGACAGCGCACTGGACCTCATTGAGG AGTACCTCAGGGCCACGGGGTACAAGTATGAGCGCCTCGATGGCAGGTCC ATTAACGTTGGAGTGTTGATATTTGTACTTCCCGCTCCGGGCGCGAGATA GCCCAGATGGTGGATGTCCAGCTTGCAACCAGAATCTACACATGTCTTTG TGAACACCTGACAGATTTGTACATGTATGTGAGCTGGTTGGGTTGGGAAG GTTGCGGTTTTGATGACCTACTTCATGTGCGTTTCCATAAGTGGTAACTT GCGTAATCAACGCACTGACAAGCGACGGTAGGCTGTAGTGCTGTACTGTG TCATTGGCTGCCTTATAGTTAGGTTACAGTTAGGGTTAGGTGTAGATTAC TAACCCTAACTTCAAGTGCGCATCTGCAGCAGTGTGAGTACTTGCCAGCT ATGAAGTGCGACTGAAGTGCAATTACATCCCATCCCTTGTCACTTAGAGC TCTACGATCTTTTGATTCATTTTCATTATGCTTTGACACCAGCAATGGCG ATTGTTCCCCATGCCCCATGTGGTACGCCGCATCAGTTGCATTGTCACCA CCACACTGTGTAAGCCTGATAGTACGTAGCGTTGGACTGCCGTGTAGGTC TTGTTGTGAGTTTTGCATGTGCACAAGGGCTTTAGGCATATCAGGATGCA TGTCAGCAGATGCCTGGGGCTTACCACAGTAATTGCGCATGCACGCTGGT ACTTACTTGCACCTGTCTTGGTCATTTGTCAATGCTGCAGCACACGGAGC AACTTCCGCACATAGGCAGATAGATGCACACTGTAGGTCTGACTCTGAGT GCTGCATGGGCATTAGGGTTAGGGTTAGGGTTAGAGGCAGAGGCAGGGTT GTCTGTGTGGTTTGAGTCGCTAGTATATATAGTGTAGTGCCTGCCAAACT AACAATAATGGCGGCACTGTTTGACTCATGGCCAATAGGCGCAGCAGCAG CGACCACGGTCATTGGCGGAAGGCATTCAATTTGACGGCTAACCACACCT TGTCCCCTAGAGCTCTACGATTGTTTGGTTCGTTTCCAATAATGCGCTAA CGTTTTTTGCGGTCATCTGTCGCCGCTGCAGCACGCGGAGCAACTTCCGC ACAGCGGCGGTGGAGCGCTTCAACCGTCCGCACTTTGAGCGCTTCATCAT GCTCCTCAGCACGCGCGCGGGAGGGCTGGGGCTCAACCTGACGAGCGCTG ACACGGTCATCATATACGACTCCGACTGGAACCCCCACAACGATCTACAG GTATGTGTGTATGTGTGCATCAGTAAAGGGGGGTATGGCTATGTATGGGT ATGGTTATGA
back to top

Coding sequence (CDS) from alignment at Contig_190:224948..231507-

>mRNA_17169 ID=mRNA_17169|Name=jgi.p|Trimin1|179332|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1455bp|location=Sequence derived from alignment at Contig_190:224948..231507- (Tribonema minus UTEX_B_3156 )
ATGGGCATTCACAGCGACGACCTCTGGGCGGAGGAGCCCGCGGGGGGTGC
GAAAGAGGGCGGGGAGGAGCCCACGGGGCTGCGCCTGAGGGAATACCAGT
TGGAGGGCGTGAACTGGCTGCTGTGGAACTGGTGGCACAAGCGCCCCTCC
ATCCTCGCCGACGAAATGGGCCTGGGCAAGACCATACAGACCACCGCCTT
CCTCCATGCCCTCTGGCGCAACAAGCTCACCGCCAACAGGGGACCCCACC
TCATTGTCGCCCCCCTGAGCCTGGTGAACCAGTGGCAGGGGGAGGTGGAC
ACTTGGTCGCCTGACATGAATGCCGTGGTGTATCACGGCAACGCGGAGGC
GCGGGATGTGATACGCGAGCGCGAGTGGTGGTACGACGCGCCGTTTGTGA
GCAAGGAGGACGCGCGCGACCTGCGGCGCGCGGGCGTGCCCAAGTTCAAC
GTCATGATCACCACCTTCGAGATCGCGCTGCGGGAGGTGCGCGACCTGAG
CCGCGTCGCCTGGCAAGTACTCGTGGTGGACGAGGCGCACCGGCTCAAGA
ACTGCGAGAGCAAGCTGTTCCAGGAGCTGAGCTCGCTGCCGCGCGAGCAC
TGCCTCCTGCTGACCGGCACGCCGCTACAGAACAAGACGGAGGAGCTGTG
GGCGCTGCTGCACTTCTGCCACAAGGACCACTTCAACGACCAGCGACAGT
TCCTGCAGCAGTTCGGGGACCTCAAGGAGGCGTCGCAGGTGGGCGAGCTG
CATGAGGTGCTGCGGCCATTCCTGCTGCGCCGCATCAAAGAGGACGTAGA
GAAGAGCCTGCCCCCCAAGGAGGAGACGGTGATTGAGGTGTCACTCACGC
CCGTCCAGCAGCAATTCTACAAGGCCATATACGCTAAGAACACGTCATAC
CTGTTCCGCGGAGCGCGCCCCAGCAACACGCCGTCGCTGATGAACGTCAT
GATGGAGCTGCGCAAGTGCTGCAACCACCCCTACCTGAATCGCGGCGTGG
AGGACCGCATCCTGAGCGAGATCCCGCACGAGCTGCGCACCCCCGCCAAC
ATCACCAAGCAGCTCATAGATGCCAGCGGCAAGATGGTTCTGCTGGCCAA
GCTGCTGCCGCGCCTGCAGCAGGAGGGGCACAAGGTGCTCATCTTCAGCC
AGATGGTGCGCTGCCTGGACCTCATTGAGGAGTACCTCAGGGCCACGGGC
TACAAGTACGAGCGCCTCGATGGCAGCACGCGGAGCAACTTCCGCACAGC
GGCGGTGGAGCGCTTCAACCGTCCGCACTTTGAGCGCTTCATCATGCTCC
TCAGCACGCGCGCGGGAGGGCTGGGGCTCAACCTGACGAGCGCTGACACG
GTCATCATATACGACTCCGACTGGAACCCCCACAACGATCTACAGGTATG
TGTGTATGTGTGCATCAGTAAAGGGGGGTATGGCTATGTATGGGTATGGT
TATGA
back to top