mRNA_17167 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A836CI28_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI28_9STRA) HSP 1 Score: 236 bits (602), Expect = 6.050e-79 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 Query: 1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHLP 342 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHLP Sbjct: 1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHLP 114
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 7.370e-18 Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPV 162 LP+WWCPWIHDL +M GC++HG +N+NAMR D++LPL P +V+ HI R+LV V Sbjct: 2492 LPLWWCPWIHDLGLMAGCVRHGFMNINAMRGDSALPLNPGAVNDHITRALVVGV 2545
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 1.010e-17 Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPV 162 LP+WWCPWIHDL +M GC++HG +N+NAMR D++LPL P +V+ HI R+LV V Sbjct: 2456 LPMWWCPWIHDLGLMAGCVRHGFMNINAMRGDSALPLNPGAVNDHITRALVVGV 2509
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A7S4D9Z2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9Z2_HETAK) HSP 1 Score: 83.2 bits (204), Expect = 2.440e-16 Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQ 333 +P WWCPWIHD A+++GCLKHG L +N +R+D +LPL + H++ S T + G M+ S + + + ED + QFPS+ L+ R+ IC+ LT+ Sbjct: 270 VPFWWCPWIHDYALVLGCLKHGYLCLNLIRSDKTLPLNQEKIQKHVLLSFSTKL--GEMAAVQFPSQQTAK-----SAEDERLLLQLAISQFPSKETLDQRMKRICLELTR 373
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A1V9ZZP1_9STRA (Chromodomain-helicase-DNA-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZP1_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.190e-11 Identity = 38/114 (33.33%), Postives = 60/114 (52.63%), Query Frame = 1 Query: 1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHLP 342 +P WWCPWIHDLA++ G L+ G+ ++ ++ L +V H+ + V SG+ +A G SL ++ W+ C FP+ + LE RV +C+LLT+ LP Sbjct: 2110 MPAWWCPWIHDLALIQGMLRFGIGDM--LQVHHFGDLHTLTVVDHVYKVFVE---------SGVLNANG----ISLNTQELAQWIQITCCTFPTMQLLEQRVMRLCLLLTEQLP 2208
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A7S2GE25_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GE25_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.890e-11 Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 Query: 1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMR 144 +P+WWCPW+HDLA++VG + HGLL V+ +R D LP A+V H+ R Sbjct: 585 MPVWWCPWVHDLALLVGAVHHGLLQVDLLRGDPILPTERATVQRHVRR 632
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A485KXH5_9STRA (Aste57867_12909 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXH5_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.940e-10 Identity = 38/114 (33.33%), Postives = 54/114 (47.37%), Query Frame = 1 Query: 1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHLP 342 +P WWCPWIHD A++ G L+HG+ A+ +L + +V HH+ R V S L+ E WVA S FP+ ALE +V + + LT+ LP Sbjct: 1537 MPRWWCPWIHDRALLDGMLRHGIGAFLALHAHGALHVE--AVYHHVRRVFVD-------------SHHAATALEHLSSEAQAKWVAATSLTFPAAHALEKKVTRLALALTEDLP 1635
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A7S1VX35_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VX35_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 8.850e-10 Identity = 35/111 (31.53%), Postives = 56/111 (50.45%), Query Frame = 1 Query: 1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLP-LTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLT 330 +P+WWCPWIHDL +++ HGL +V + LP L SV +H+ + V G ++ R ++E+ AWV + +FP+ +ENR+ +C LT Sbjct: 764 VPVWWCPWIHDLVILIHAAVHGLQSVTS-----ELPRLQQLSVENHVRETFVKGANGKSPTLPDSFLRR-------ASEEELDAWVQMQAQEFPTPTVIENRLALMCSQLT 862
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A024UQC0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQC0_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.250e-9 Identity = 35/113 (30.97%), Postives = 56/113 (49.56%), Query Frame = 1 Query: 1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHL 339 +P+WWCPWIHD A++ L HG+ + + +L + +V H++R +T G + L + T D AW Q S +FP LE +V +C++LT+ L Sbjct: 1530 MPVWWCPWIHDAALLEAMLTHGVGSFLELHKHKALHVD--AVFDHVVRVFLT--GDGATQLPALNPSM------FPTDADKFAWARQTSLEFPPVDILEKKVMRLCLMLTEEL 1632
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A7S0ULG0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0ULG0_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 2.230e-9 Identity = 35/117 (29.91%), Postives = 58/117 (49.57%), Query Frame = 1 Query: 4 PIWWCPWIHDLAVMVGCLKHGLLNV-----NAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHL 339 P+WWCPWIHD A++ GL ++ + +A + +++ HI +LV A SI G S+ ++T AW+ + + +FPS A+E R+ +C LT+ L Sbjct: 687 PVWWCPWIHDAALLAHTSTRGLFSILRDLESESGREAGPVFSRQAITQHIRSTLVAD-ASIAQSIKGASSS-----------DETAAWIERYAKEFPSLNAIERRLAFLCAKLTEDL 791
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A836CLN3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN3_9STRA) HSP 1 Score: 228 bits (581), Expect = 4.970e-76 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 Query: 1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPPR 315 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPPR Sbjct: 1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPPR 105
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A835ZDE5_9STRA (Alkaline-phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE5_9STRA) HSP 1 Score: 137 bits (345), Expect = 6.310e-36 Identity = 67/103 (65.05%), Postives = 74/103 (71.84%), Query Frame = 1 Query: 1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRP 309 P ALGYKKSLA+L SGN +WTY G CG KLTD+W+D PA LKPA C+ NA C YEDELFE RAVQWIKAHDAR+PLFMVYAP AV +P P Sbjct: 147 PKALGYKKSLAFLCSGNRYWTYDAQFGICGDGGGVKLTDLWEDDGPAINLKPAADCS-NALPNCFYEDELFEKRAVQWIKAHDARKPLFMVYAPHAVHSPLAP 248
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A836CMP8_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP8_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.010e-34 Identity = 66/104 (63.46%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPP 312 P A GYKKSLAYL SGN +WTY G CG + LTD+WQD PA LKPA C N Q CVYEDEL E RA QWIKAHDA EPLFMVYAP A+ +P PP Sbjct: 153 PKARGYKKSLAYLCSGNKYWTYEAQFGICGAGAGPTLTDLWQDDGPAIDLKPAAGCA-NGQANCVYEDELLEQRATQWIKAHDASEPLFMVYAPHALHSPLDPP 255
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A835Z5L6_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5L6_9STRA) HSP 1 Score: 118 bits (295), Expect = 6.890e-29 Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1 Query: 1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTK-LTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPP 312 P A G+ K L +L SGND W+YT+ G CG ++ LTD+W+D PA LKP C+ N Q GCVYE+ELFE R Q +KAHDA+ PL + YAP +V P +PP Sbjct: 167 PRARGWSKYLGFLFSGNDLWSYTIGNGMCGATAEADDLTDLWEDDGPALALKPPEHCSVNRQDGCVYEEELFEARVTQTLKAHDAQRPLLLTYAPHSVHTPLQPP 271
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A835YXV1_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV1_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.510e-24 Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1 Query: 1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRP 309 P A GY +SLAYL++GND WTYT G CG SK L D+W+D PA P + C Q GC YEDELFE R Q I+ HD +PLF+V+A AV AP P Sbjct: 161 PKARGYSRSLAYLDAGNDQWTYT-GGNMCG--SKYSLKDLWEDDGPAVNYTPPKRCTSATQNGCQYEDELFEARISQTIQFHDQDQPLFLVWATHAVHAPLAP 260
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A835ZHV6_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV6_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.890e-21 Identity = 48/103 (46.60%), Postives = 59/103 (57.28%), Query Frame = 1 Query: 1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRP 309 P A GY +SLAYL SGN+ WTY C + L D+W+D PA KP + C Q GC YED LFE R Q I+ HD +PLF+V+A AV +P P Sbjct: 158 PKARGYSRSLAYLASGNNQWTYADGQAMC--SKGVSLIDLWEDDGPAVNYKPPKRCTSTTQNGCEYEDSLFEARVSQTIQFHDQDQPLFLVWATHAVHSPLAP 258
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A7S2FAG3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FAG3_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.250e-7 Identity = 39/128 (30.47%), Postives = 57/128 (44.53%), Query Frame = 1 Query: 1 PIALGYKKSLAYLNSGNDFWTYTMTG-------GACGINSKTKLTDIWQ-----DGAPAFGLKPART-C--------NHNAQTGCVYEDELFETRAVQWIKAHDAREP---LFMVYAPRAVTAPWRPP 312 P GY SL+Y ND+W +T+ G + + D+W D PA GL + C + + C+YED LF+TRA++ + HD +P LF+ YAP V P + P Sbjct: 179 PAGRGYDSSLSYFYHTNDYWNFTVDDDFGAGPQGCESLEEGESIYDLWVKEVDGDEGPAIGLNNSIDGCYSGDGAFPEDDVEGNCMYEDALFQTRALKIVNDHDLSQPEHPLFLFYAPHIVHEPLQVP 306 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|133924 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17167 ID=mRNA_17167|Name=jgi.p|Trimin1|133924|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_190:208651..208992- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCCCCATCTGGTGGTGCCCCTGGATCCACGACCTCGCCGTCATGGTCGGback to top protein sequence of jgi.p|Trimin1|133924 >Trimin1|133924|gw1.190.14.1 ID=Trimin1|133924|gw1.190.14.1|Name=jgi.p|Trimin1|133924|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLback to top mRNA from alignment at Contig_190:208651..208992- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17167 ID=mRNA_17167|Name=jgi.p|Trimin1|133924|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_190:208651..208992- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_190:208651..208992- >mRNA_17167 ID=mRNA_17167|Name=jgi.p|Trimin1|133924|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_190:208651..208992- (Tribonema minus UTEX_B_3156 )back to top |