mRNA_17167 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133924
Unique NamemRNA_17167
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A836CI28_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI28_9STRA)

HSP 1 Score: 236 bits (602), Expect = 6.050e-79
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHLP 342
            LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHLP
Sbjct:    1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHLP 114          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.370e-18
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1
Query:    1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPV 162
            LP+WWCPWIHDL +M GC++HG +N+NAMR D++LPL P +V+ HI R+LV  V
Sbjct: 2492 LPLWWCPWIHDLGLMAGCVRHGFMNINAMRGDSALPLNPGAVNDHITRALVVGV 2545          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.010e-17
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1
Query:    1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPV 162
            LP+WWCPWIHDL +M GC++HG +N+NAMR D++LPL P +V+ HI R+LV  V
Sbjct: 2456 LPMWWCPWIHDLGLMAGCVRHGFMNINAMRGDSALPLNPGAVNDHITRALVVGV 2509          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A7S4D9Z2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9Z2_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 2.440e-16
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQ 333
            +P WWCPWIHD A+++GCLKHG L +N +R+D +LPL    +  H++ S  T +  G M+     S +  +     + ED    +     QFPS+  L+ R+  IC+ LT+
Sbjct:  270 VPFWWCPWIHDYALVLGCLKHGYLCLNLIRSDKTLPLNQEKIQKHVLLSFSTKL--GEMAAVQFPSQQTAK-----SAEDERLLLQLAISQFPSKETLDQRMKRICLELTR 373          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A1V9ZZP1_9STRA (Chromodomain-helicase-DNA-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZP1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.190e-11
Identity = 38/114 (33.33%), Postives = 60/114 (52.63%), Query Frame = 1
Query:    1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHLP 342
            +P WWCPWIHDLA++ G L+ G+ ++  ++      L   +V  H+ +  V          SG+ +A G     SL  ++   W+    C FP+ + LE RV  +C+LLT+ LP
Sbjct: 2110 MPAWWCPWIHDLALIQGMLRFGIGDM--LQVHHFGDLHTLTVVDHVYKVFVE---------SGVLNANG----ISLNTQELAQWIQITCCTFPTMQLLEQRVMRLCLLLTEQLP 2208          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A7S2GE25_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GE25_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.890e-11
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMR 144
            +P+WWCPW+HDLA++VG + HGLL V+ +R D  LP   A+V  H+ R
Sbjct:  585 MPVWWCPWVHDLALLVGAVHHGLLQVDLLRGDPILPTERATVQRHVRR 632          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A485KXH5_9STRA (Aste57867_12909 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXH5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.940e-10
Identity = 38/114 (33.33%), Postives = 54/114 (47.37%), Query Frame = 1
Query:    1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHLP 342
            +P WWCPWIHD A++ G L+HG+    A+    +L +   +V HH+ R  V              S         L+ E    WVA  S  FP+  ALE +V  + + LT+ LP
Sbjct: 1537 MPRWWCPWIHDRALLDGMLRHGIGAFLALHAHGALHVE--AVYHHVRRVFVD-------------SHHAATALEHLSSEAQAKWVAATSLTFPAAHALEKKVTRLALALTEDLP 1635          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A7S1VX35_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VX35_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.850e-10
Identity = 35/111 (31.53%), Postives = 56/111 (50.45%), Query Frame = 1
Query:    1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLP-LTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLT 330
            +P+WWCPWIHDL +++    HGL +V +      LP L   SV +H+  + V    G   ++      R        ++E+  AWV   + +FP+   +ENR+  +C  LT
Sbjct:  764 VPVWWCPWIHDLVILIHAAVHGLQSVTS-----ELPRLQQLSVENHVRETFVKGANGKSPTLPDSFLRR-------ASEEELDAWVQMQAQEFPTPTVIENRLALMCSQLT 862          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A024UQC0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQC0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.250e-9
Identity = 35/113 (30.97%), Postives = 56/113 (49.56%), Query Frame = 1
Query:    1 LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHL 339
            +P+WWCPWIHD A++   L HG+ +   +    +L +   +V  H++R  +T    G   +  L  +         T  D  AW  Q S +FP    LE +V  +C++LT+ L
Sbjct: 1530 MPVWWCPWIHDAALLEAMLTHGVGSFLELHKHKALHVD--AVFDHVVRVFLT--GDGATQLPALNPSM------FPTDADKFAWARQTSLEFPPVDILEKKVMRLCLMLTEEL 1632          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A7S0ULG0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0ULG0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-9
Identity = 35/117 (29.91%), Postives = 58/117 (49.57%), Query Frame = 1
Query:    4 PIWWCPWIHDLAVMVGCLKHGLLNV-----NAMRTDASLPLTPASVSHHIMRSLVTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALENRVFAICVLLTQHL 339
            P+WWCPWIHD A++      GL ++     +    +A    +  +++ HI  +LV   A    SI G  S+           ++T AW+ + + +FPS  A+E R+  +C  LT+ L
Sbjct:  687 PVWWCPWIHDAALLAHTSTRGLFSILRDLESESGREAGPVFSRQAITQHIRSTLVAD-ASIAQSIKGASSS-----------DETAAWIERYAKEFPSLNAIERRLAFLCAKLTEDL 791          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A836CLN3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN3_9STRA)

HSP 1 Score: 228 bits (581), Expect = 4.970e-76
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPPR 315
            PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPPR
Sbjct:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPPR 105          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A835ZDE5_9STRA (Alkaline-phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 6.310e-36
Identity = 67/103 (65.05%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRP 309
            P ALGYKKSLA+L SGN +WTY    G CG     KLTD+W+D  PA  LKPA  C+ NA   C YEDELFE RAVQWIKAHDAR+PLFMVYAP AV +P  P
Sbjct:  147 PKALGYKKSLAFLCSGNRYWTYDAQFGICGDGGGVKLTDLWEDDGPAINLKPAADCS-NALPNCFYEDELFEKRAVQWIKAHDARKPLFMVYAPHAVHSPLAP 248          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A836CMP8_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.010e-34
Identity = 66/104 (63.46%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPP 312
            P A GYKKSLAYL SGN +WTY    G CG  +   LTD+WQD  PA  LKPA  C  N Q  CVYEDEL E RA QWIKAHDA EPLFMVYAP A+ +P  PP
Sbjct:  153 PKARGYKKSLAYLCSGNKYWTYEAQFGICGAGAGPTLTDLWQDDGPAIDLKPAAGCA-NGQANCVYEDELLEQRATQWIKAHDASEPLFMVYAPHALHSPLDPP 255          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A835Z5L6_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5L6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.890e-29
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTK-LTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRPP 312
            P A G+ K L +L SGND W+YT+  G CG  ++   LTD+W+D  PA  LKP   C+ N Q GCVYE+ELFE R  Q +KAHDA+ PL + YAP +V  P +PP
Sbjct:  167 PRARGWSKYLGFLFSGNDLWSYTIGNGMCGATAEADDLTDLWEDDGPALALKPPEHCSVNRQDGCVYEEELFEARVTQTLKAHDAQRPLLLTYAPHSVHTPLQPP 271          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A835YXV1_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.510e-24
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRP 309
            P A GY +SLAYL++GND WTYT  G  CG  SK  L D+W+D  PA    P + C    Q GC YEDELFE R  Q I+ HD  +PLF+V+A  AV AP  P
Sbjct:  161 PKARGYSRSLAYLDAGNDQWTYT-GGNMCG--SKYSLKDLWEDDGPAVNYTPPKRCTSATQNGCQYEDELFEARISQTIQFHDQDQPLFLVWATHAVHAPLAP 260          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A835ZHV6_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.890e-21
Identity = 48/103 (46.60%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTGGACGINSKTKLTDIWQDGAPAFGLKPARTCNHNAQTGCVYEDELFETRAVQWIKAHDAREPLFMVYAPRAVTAPWRP 309
            P A GY +SLAYL SGN+ WTY      C  +    L D+W+D  PA   KP + C    Q GC YED LFE R  Q I+ HD  +PLF+V+A  AV +P  P
Sbjct:  158 PKARGYSRSLAYLASGNNQWTYADGQAMC--SKGVSLIDLWEDDGPAVNYKPPKRCTSTTQNGCEYEDSLFEARVSQTIQFHDQDQPLFLVWATHAVHSPLAP 258          
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Match: A0A7S2FAG3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FAG3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.250e-7
Identity = 39/128 (30.47%), Postives = 57/128 (44.53%), Query Frame = 1
Query:    1 PIALGYKKSLAYLNSGNDFWTYTMTG-------GACGINSKTKLTDIWQ-----DGAPAFGLKPART-C--------NHNAQTGCVYEDELFETRAVQWIKAHDAREP---LFMVYAPRAVTAPWRPP 312
            P   GY  SL+Y    ND+W +T+         G   +     + D+W      D  PA GL  +   C          + +  C+YED LF+TRA++ +  HD  +P   LF+ YAP  V  P + P
Sbjct:  179 PAGRGYDSSLSYFYHTNDYWNFTVDDDFGAGPQGCESLEEGESIYDLWVKEVDGDEGPAIGLNNSIDGCYSGDGAFPEDDVEGNCMYEDALFQTRALKIVNDHDLSQPEHPLFLFYAPHIVHEPLQVP 306          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133924 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI28_9STRA6.050e-79100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5KVU7_9PHAE7.370e-1861.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDU9_ECTSI1.010e-1761.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D9Z2_HETAK2.440e-1636.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9ZZP1_9STRA1.190e-1133.33Chromodomain-helicase-DNA-binding protein n=1 Tax=... [more]
A0A7S2GE25_9STRA2.890e-1152.08Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A485KXH5_9STRA1.940e-1033.33Aste57867_12909 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1VX35_9STRA8.850e-1031.53Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A024UQC0_9STRA1.250e-930.97Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S0ULG0_9STRA2.230e-929.91Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]

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BLAST of jgi.p|Trimin1|133924 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CLN3_9STRA4.970e-76100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZDE5_9STRA6.310e-3665.05Alkaline-phosphatase-like protein n=1 Tax=Tribonem... [more]
A0A836CMP8_9STRA1.010e-3463.46Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835Z5L6_9STRA6.890e-2951.43Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835YXV1_9STRA2.510e-2452.43Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835ZHV6_9STRA1.890e-2146.60Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A7S2FAG3_9STRA1.250e-730.47Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_190contigContig_190:208651..208992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133924|gw1.190.14.1
BRITEko00000,ko01000,ko03036
KEGG koko:K14436,ko:K14437
EC3.6.4.12
Descriptionhelicase activity
COG categoryKL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0553@1|root,KOG0384@2759|Eukaryota
Evalue3.29e-21
Seed ortholog2880.D8LDU9
Hectar predicted targeting categoryother localisation
TranscriptId134246
TrackFilteredModels1
ProteinId133924
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133924gene_17167Tribonema minus UTEX_B_3156 geneContig_190 208651..208992 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17167_1exon_17167_1Tribonema minus UTEX_B_3156 exonContig_190 208651..208992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17167CDS_17167Tribonema minus UTEX_B_3156 CDSContig_190 208651..208992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133924Trimin1|133924|gw1.190.14.1Tribonema minus UTEX_B_3156 polypeptideContig_190 208651..208992 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17167 ID=mRNA_17167|Name=jgi.p|Trimin1|133924|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_190:208651..208992- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCCCCATCTGGTGGTGCCCCTGGATCCACGACCTCGCCGTCATGGTCGG
CTGCCTCAAGCACGGCCTCCTGAACGTGAATGCCATGCGCACGGACGCCA
GCCTGCCGCTCACACCCGCGTCCGTGAGCCACCACATCATGCGCTCCCTC
GTGACGCCCGTCGCGGGCGGCAGGATGAGCATCAGCGGCCTCGGCAGCGC
GCGCGGCGGCCGCGGCGGCGCCTCGCTCACGCAGGAGGACACCACGGCGT
GGGTGGCGCAGCTCAGCTGCCAGTTTCCCTCGCGCCGCGCGCTGGAGAAC
CGCGTGTTTGCCATCTGCGTTCTCCTCACGCAGCACCTGCCG
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protein sequence of jgi.p|Trimin1|133924

>Trimin1|133924|gw1.190.14.1 ID=Trimin1|133924|gw1.190.14.1|Name=jgi.p|Trimin1|133924|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp
LPIWWCPWIHDLAVMVGCLKHGLLNVNAMRTDASLPLTPASVSHHIMRSL
VTPVAGGRMSISGLGSARGGRGGASLTQEDTTAWVAQLSCQFPSRRALEN
RVFAICVLLTQHLP
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mRNA from alignment at Contig_190:208651..208992-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17167 ID=mRNA_17167|Name=jgi.p|Trimin1|133924|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_190:208651..208992- (Tribonema minus UTEX_B_3156 )
CTCCCCATCTGGTGGTGCCCCTGGATCCACGACCTCGCCGTCATGGTCGG CTGCCTCAAGCACGGCCTCCTGAACGTGAATGCCATGCGCACGGACGCCA GCCTGCCGCTCACACCCGCGTCCGTGAGCCACCACATCATGCGCTCCCTC GTGACGCCCGTCGCGGGCGGCAGGATGAGCATCAGCGGCCTCGGCAGCGC GCGCGGCGGCCGCGGCGGCGCCTCGCTCACGCAGGAGGACACCACGGCGT GGGTGGCGCAGCTCAGCTGCCAGTTTCCCTCGCGCCGCGCGCTGGAGAAC CGCGTGTTTGCCATCTGCGTTCTCCTCACGCAGCACCTGCCG
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Coding sequence (CDS) from alignment at Contig_190:208651..208992-

>mRNA_17167 ID=mRNA_17167|Name=jgi.p|Trimin1|133924|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_190:208651..208992- (Tribonema minus UTEX_B_3156 )
CTCCCCATCTGGTGGTGCCCCTGGATCCACGACCTCGCCGTCATGGTCGG
CTGCCTCAAGCACGGCCTCCTGAACGTGAATGCCATGCGCACGGACGCCA
GCCTGCCGCTCACACCCGCGTCCGTGAGCCACCACATCATGCGCTCCCTC
GTGACGCCCGTCGCGGGCGGCAGGATGAGCATCAGCGGCCTCGGCAGCGC
GCGCGGCGGCCGCGGCGGCGCCTCGCTCACGCAGGAGGACACCACGGCGT
GGGTGGCGCAGCTCAGCTGCCAGTTTCCCTCGCGCCGCGCGCTGGAGAAC
CGCGTGTTTGCCATCTGCGTTCTCCTCACGCAGCACCTGCCG
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