mRNA_17165 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353867
Unique NamemRNA_17165
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A836CHJ2_9STRA (UbiA prenyltransferase family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ2_9STRA)

HSP 1 Score: 568 bits (1464), Expect = 6.260e-202
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 2
Query:  290 MSPVNYIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYVGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGVYYSPAV 1156
            MSPVNYIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYVGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGVYYSPAV
Sbjct:    1 MSPVNYIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYVGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGVYYSPAV 289          
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A7S2UT65_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT65_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.260e-68
Identity = 127/286 (44.41%), Postives = 181/286 (63.29%), Query Frame = 2
Query:  305 YIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAP----DRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSM-QYVGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGVYYS 1147
            Y VA+RPW+FT  V+ + +T+AL   + G  L +   L  + + I  QAA NL NS +D+ YGVDN  + GDR LV+KKI+  GAL+ + +L    + + +P L         +  +VFL  +ALA  YTA P+ LKY  +GD  IF+ FGPL M   A+++TG+ Q+ ++ Y LPV LLTEAILHANNTRDIK D++ G  T+A ++GYQ S  L   M+ GAY++A  ++  +  G  +  LS+P+AL  L+  SP  + NMDE+ AQLHLLF +LL +G+  S
Sbjct:    7 YTVASRPWTFTASVIPIAVTAALCKKELGAELFSMNLLSALIVGIGCQAASNLTNSYYDFKYGVDNKFSSGDRSLVEKKISPSGALVSSSLLYLVVTMVALPHLWQSIARGGSEVAWVFLPGMALAYFYTAGPYNLKYHCLGDLAIFLAFGPLLMQFTALLLTGSVQWQLMSYTLPVGLLTEAILHANNTRDIKTDSKAGANTLATVMGYQVSVVLLAVMIIGAYVAAAWITWAESCGAGITFLSLPVALMILKDLSPKKLVNMDERCAQLHLLFGVLLTLGISIS 292          
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: D7FHN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN3_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 4.910e-66
Identity = 121/282 (42.91%), Postives = 177/282 (62.77%), Query Frame = 2
Query:  308 IVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIP-----KLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYV-GCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVG 1135
            + ATRPWS+T  ++ VLLT ALVH   G+ +   G    + + I LQA+GNL+NS  D+ YGVD   T GDR +VD  ++ +GAL+ A V+  A    V+P     ++    R+    F   +A+  SYT  PF+LKYR +GD  +F+ FGP+ M  AA+++ G+ Q+WVLP+ +P  LL EAILHANN RDI++D   GI T+A  +G++ S+ LY+ ++  AY+ A  L+     G  L  L++PLA+S L+   P  + N+DEKTA+LHLLF +L+  G
Sbjct:    7 LTATRPWSWTAGIIPVLLTGALVHKAEGVSVAKGGLSNALMMVITLQASGNLVNSYIDHNYGVDTIETAGDRTIVDAHVSPKGALVLAGVMFFAAVAAVLPTISRMRVSGQARELEATFWVGVAMVFSYTCWPFRLKYRGLGDITVFLLFGPMLMQVAAMLVCGSVQHWVLPFGVPAALLCEAILHANNMRDIEQDRSAGISTLA--IGFRSSQVLYFGLLGMAYVVAGCLAATGSRGSALSFLTLPLAISALKDCRPEAVRNLDEKTAKLHLLFGVLMTAG 286          
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A6H5JLI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI1_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.770e-65
Identity = 120/282 (42.55%), Postives = 176/282 (62.41%), Query Frame = 2
Query:  308 IVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLL-----APDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTL-SMQYVGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVG 1135
            + ATRPWS+T  V+ VLLT  LVH   G+ ++  G    + + + LQA+GNL+NS  D+ YGVD   T GDR +VD  ++ +GAL+ A V+  A    V+P +         R+    F   +A+  SYT  PF+LKYR +GD  +F+ FGP+ M  AA+++ G+ Q+WVLP+ +P  LL EAILHANN RDI++D   GI T+A  +G++ S+ LY++++  AY+ A  L S    G  L  L++PLA+S L+   P  +  +DEKTA+LHLLF +L+  G
Sbjct:   96 LTATRPWSWTAGVIPVLLTGTLVHKAEGVSMVKGGLSNALMMVVTLQASGNLVNSYVDHNYGVDTIETAGDRTIVDAHVSPKGALVLAGVMFFAAVAAVLPTISRMRASGQARELEATFWVGVAMVFSYTCWPFRLKYRGLGDITVFLLFGPMLMQVAAMLICGSVQHWVLPFGVPAALLCEAILHANNMRDIEQDRSAGISTLATAIGFRSSQVLYFSLLGMAYVVAGCLASTGNRGSALSFLTLPLAISALKDCRPEAVRKLDEKTAKLHLLFGVLMTAG 377          
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A7S4DAV0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAV0_HETAK)

HSP 1 Score: 217 bits (552), Expect = 8.830e-64
Identity = 122/280 (43.57%), Postives = 171/280 (61.07%), Query Frame = 2
Query:  308 IVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQY-VGCCLVLLSVPLALSTLRSFSP--PTMANMDEKTAQLHLLFSLLLNVGV 1138
            I+A RPWS+T  V+ ++LT  L+  + G+ LL+      + + + +QAA NL NS  D+  GVD   T GDR +VD  IT   A+L +++       L  P L+       ++F A + L+  YTA PF LKY  +GD  IF+ FGPL M   ++++ G  +  VLPY LPV LLTEAILHANN RDIK D R GI T+A ++G+  ++ LY  MV GA+L AL +++ + +GC LVL ++PL +  +    P  P M NMDE+TAQLHLL+  LL  GV
Sbjct:   10 IIAARPWSWTAAVVPIILTGVLLKKESGISLLSYDFGAALAIGVLVQAAANLTNSYLDWKKGVDKKETAGDRAIVDGLITPVNAILVSIICYGISILLAFPYLVKHGASVKWIFAAGMLLSFFYTANPFSLKYLCLGDVAIFLAFGPLLMGFTSVLLAGDLRTSVLPYTLPVGLLTEAILHANNMRDIKSDTRAGIYTLASVVGFGPAKVLYAFMVFGAFLVALAMAVTHSLGCALVLPALPLGVRNIADLQPHSPKMKNMDERTAQLHLLYGALLIAGV 289          
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A7S0SXL2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXL2_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.570e-52
Identity = 104/280 (37.14%), Postives = 170/280 (60.71%), Query Frame = 2
Query:  305 YIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFL-YVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYV-GCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGV 1138
            Y++ATRPWSFT  ++ +++T+A+        L +   +  M + I +QA  NL N+ FD+  GVD+    G++ LV++K++    L+ +L+   +G + ++P L+      L  +F+  +ALA  YTA P  LKY+A+GD  IF+CFGPL M   +I++ G+    +  Y++PV LLTE ILH NN RDIK D+  G  T+A ++G   S  ++ A++ G+YLS + + + Y  GC   L ++PLALS  + +    M ++  +TAQLHL F ++L +G+
Sbjct:   10 YVLATRPWSFTAAIVPIIITAAVCKKS----LFSIEFIRAMCMGITIQAGANLTNTYFDFINGVDSKIN-GEKTLVERKVSCTEVLVLSLICYLSGLFCILPYLITSKNLSLPVIFMVGVALAYFYTANPIGLKYKALGDVTIFLCFGPLLMQCTSILLVGSTTDDLYLYSIPVGLLTEEILHVNNARDIKADSLSGAITLATIVGPDISYLIFLALLIGSYLSIIIIGLIYHWGCLAALFTIPLALSLDKHYREGKMVDLPAETAQLHLPFGIILALGI 284          
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A482SRC3_9ARCH (Prenyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRC3_9ARCH)

HSP 1 Score: 181 bits (460), Expect = 2.650e-50
Identity = 105/278 (37.77%), Postives = 160/278 (57.55%), Query Frame = 2
Query:  311 VATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYV-FLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQY-VGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGV 1138
            VATRPWSFT  V+ VL+T+A+       P   R     + + + + A  NL N+ FD+  G D      D  LVDK+++    LL ++V  T G + ++P L +     + + F++ + LA  YT  P  LKY A+GD  IF+CFGPL M  +AI+MT    Y +  Y +P+ LLTE+ILHANN RDIK D   G  T+A ++G   S   +  ++ GAYLS L ++  +  GC L LL++PL L  ++ F    + ++ ++ ++LHL F +L+ VG+
Sbjct:   10 VATRPWSFTTTVIPVLVTAAVTGVSFFTPEFARA----LAMGLFVHAGANLTNTYFDFINGFDTKQHNSDPTLVDKRLSPVTILLMSIVCYTIGIFSILPLLFSRSYHDIIIPFVSGLVLAFFYTGNPVGLKYIALGDITIFLCFGPLLMQVSAIIMTQKMSYEMYIYTIPIGLLTESILHANNARDIKNDTANGAITLASIMGLTMSYNFFIFLIVGAYLSVLGIAAYFHYGCLLSLLTLPLGLDLIKKFRDQQLKDLSKEVSKLHLPFGVLMLVGI 283          
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A7S3Y1J0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1J0_HETAK)

HSP 1 Score: 178 bits (452), Expect = 8.890e-50
Identity = 97/224 (43.30%), Postives = 135/224 (60.27%), Query Frame = 2
Query:  308 IVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSAL 979
            I+A RPWS+T  V+ ++LT  L+  + G+ LL+      + + + +QAA NL NS  D+  GVD   T GDR +VD  IT   A+L +++       L  P L+       ++F A + L+  YTA PF LKY  +GD  IF+ FGPL M   ++++ G  +  VLPY LPV LLTEAILHANN RDIK D R GI T+A ++G+  ++ LY  MV GA+L AL
Sbjct:   10 IIAARPWSWTAAVVPIILTGVLLKKESGISLLSYDFGAALAIGVLVQAAANLTNSYLDWKKGVDKKETAGDRAIVDGLITPVNAILVSIICYGISILLAFPYLVKHGASVKWIFAAGMLLSFFYTANPFSLKYLCLGDVAIFLAFGPLLMGFTSVLLAGDLRTSVLPYTLPVGLLTEAILHANNMRDIKSDTRAGIYTLASVVGFGPAKVLYAFMVFGAFLVAL 233          
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: L1J8P6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J8P6_GUITC)

HSP 1 Score: 167 bits (424), Expect = 6.240e-45
Identity = 108/296 (36.49%), Postives = 169/296 (57.09%), Query Frame = 2
Query:  308 IVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRC-----------LVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTM--TGAAIVMTGAPQYW--VLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSM--QYVGCCLVLLSVPLALSTLRSFSPPT--MANMDEKTAQLHLLFSLLLNVGV 1138
            +VA RPW+F   ++ VLLT  LVH + G+       +  + L + +QAA N++N+ +DY  GVD P  +G              LV   +  R  L  ALVL  +   +++P+  +   +   ++L   +L+  YTAPPFKLKY A+GDA IFI FGPL +  T   +        W  V  Y +P + + E ILHANN+RDI ED++ G+ T+A +LG+  S+ +Y  ++  AY++ + +S+  + +G  +VLLS+PLA   +  F+     MA++ ++TA+LH+ F LLL VGV
Sbjct:    5 VVAMRPWTFPAALVPVLLTVTLVH-RSGVAWSLPEMIRAILLGVIVQAASNVINTYWDYENGVDGP-NVGSGADPSVVLPHKVVLVGGGLKPRSVLALALVLYGSSLLVLLPRF-SDGYRIPLLYLCGTSLSYFYTAPPFKLKYFALGDAAIFIAFGPLLVYCTILLVAPKSVDALWGEVFGYTIPCSFICECILHANNSRDIGEDSKAGLVTLATILGFNGSKRVYVGLITAAYVTVIIMSVGQRRLGMMMVLLSLPLAFDVISRFTHDINRMADLPKRTAKLHMAFGLLLIVGV 297          
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A7C3J0R6_9BACT (1,4-dihydroxy-2-naphthoate octaprenyltransferase n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C3J0R6_9BACT)

HSP 1 Score: 151 bits (382), Expect = 1.040e-38
Identity = 109/294 (37.07%), Postives = 161/294 (54.76%), Query Frame = 2
Query:  305 YIVATRPWSFTVPVMGVLLTS--ALVHAQHGMPLLNRGCLEVMTLCICLQAAG-NLLNSVFDYTYGVDNPATIGD-RCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYV---GCCLVLLSVPLALSTLRSFS------PPTMANMDEKTAQLHLLFSLLLNVGVYYS 1147
            +I A RP++++  V+ V+L +  AL +   G    N     V+ +C  L   G NL++  FDY   VD P T G  R LV+  +  +  L   ++    G  L +  +       L + L  +     YTA PF+ KY A+GD +IFI FGPL + GA + +TG   Y VL  ++PV  L  AILHANNTRD+K D R  IKT+AML+G + ++  YY ++ GA+LS + L +  +      LV LS+P AL  ++  S      P ++A +D  TAQ H++F LLL+VG+  S
Sbjct:   18 WIQAFRPFAYSASVIPVILAAMLALTYNSEGT---NWFLFPVILICAVLFHTGANLVSEYFDYKNQVDKPDTFGSSRVLVEGLLLPKQVLNAGIIAFALGFILGLILVYFRGTDILILGLIGLIGGFFYTAKPFQFKYIALGDLLIFILFGPLLVLGAYLGLTGDLNYSVLLVSIPVGFLVVAILHANNTRDMKFDRRAKIKTLAMLIGLKGAKFEYYFLIFGAFLSVIILILFNIISPWSLLVFLSLPPALKNVKIISNVDAENPSSIAMLDVLTAQHHMIFGLLLSVGILIS 308          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHJ2_9STRA6.260e-202100.00UbiA prenyltransferase family n=1 Tax=Tribonema mi... [more]
A0A7S2UT65_9STRA1.260e-6844.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FHN3_ECTSI4.910e-6642.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLI1_9PHAE1.770e-6542.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DAV0_HETAK8.830e-6443.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0SXL2_9STRA2.570e-5237.14Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A482SRC3_9ARCH2.650e-5037.77Prenyltransferase n=1 Tax=archaeon TaxID=1906665 R... [more]
A0A7S3Y1J0_HETAK8.890e-5043.30Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1J8P6_GUITC6.240e-4536.49Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7C3J0R6_9BACT1.040e-3837.071,4-dihydroxy-2-naphthoate octaprenyltransferase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_190contigContig_190:201582..202917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353867|estExt_Genemark1.C_Ctg_1900029
BRITEko00000,ko04131
KEGG koko:K20824
GOsGO:0000139,GO:0001885,GO:0001932,GO:0001933,GO:0002064,GO:0002164,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003158,GO:0003674,GO:0003824,GO:0004497,GO:0004517,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005783,GO:0005789,GO:0005794,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006766,GO:0006775,GO:0006950,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0008285,GO:0008592,GO:0009058,GO:0009108,GO:0009110,GO:0009233,GO:0009234,GO:0009636,GO:0009653,GO:0009791,GO:0009888,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016209,GO:0016491,GO:0016705,GO:0016709,GO:0016740,GO:0016765,GO:0019220,GO:0019222,GO:0023051,GO:0023057,GO:0030097,GO:0030154,GO:0030173,GO:0030855,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031966,GO:0031967,GO:0031975,GO:0031984,GO:0032194,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033554,GO:0034405,GO:0035166,GO:0035167,GO:0035203,GO:0035204,GO:0035206,GO:0035207,GO:0042127,GO:0042175,GO:0042180,GO:0042181,GO:0042221,GO:0042325,GO:0042326,GO:0042362,GO:0042371,GO:0042373,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043409,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045446,GO:0045595,GO:0045596,GO:0045610,GO:0045611,GO:0045613,GO:0045614,GO:0045751,GO:0045936,GO:0046578,GO:0046580,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051093,GO:0051171,GO:0051172,GO:0051174,GO:0051186,GO:0051188,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051716,GO:0055114,GO:0060255,GO:0060429,GO:0065007,GO:0070584,GO:0070887,GO:0071498,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0097237,GO:0098588,GO:0098754,GO:0098791,GO:0098827,GO:0098869,GO:1901576,GO:1901661,GO:1901663,GO:1902531,GO:1902532,GO:1903706,GO:1903707,GO:1990748,GO:2000026
Preferred nameUBIAD1
Descriptionvitamin K biosynthetic process
COG categoryH
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1575@1|root,KOG4581@2759|Eukaryota
Evalue6.86e-69
Seed ortholog2880.D7FHN3
Hectar predicted targeting categorysignal peptide
TranscriptId354189
TrackFilteredModels1
ProteinId353867
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353867gene_17165Tribonema minus UTEX_B_3156 geneContig_190 201582..202917 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17165_1exon_17165_1Tribonema minus UTEX_B_3156 exonContig_190 201582..202917 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17165UTR3_17165Tribonema minus UTEX_B_3156 three_prime_UTRContig_190 201582..201758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17165CDS_17165Tribonema minus UTEX_B_3156 CDSContig_190 201759..202628 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17165UTR5_17165Tribonema minus UTEX_B_3156 five_prime_UTRContig_190 202629..202917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353867Trimin1|353867|estExt_Genemark1.C_Ctg_1900029Tribonema minus UTEX_B_3156 polypeptideContig_190 201759..202628 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17165 ID=mRNA_17165|Name=jgi.p|Trimin1|353867|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1336bp|location=Sequence derived from alignment at Contig_190:201582..202917- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGAGAAAGAGCGGGAGGAGGACATCCACCAGTTGAGTCGAAGCAACGCT
TCAAACGAGTGGGAGGCAGCGCTTGCCCTAAGGCCCGCTCATAGAGATTG
TTCAAGCGGCCGAGAAACCAGGAGCCCCAGTTCAGGGTGGCGCTCATACT
GCACATCAAGCTGCGTTGCTGGAGGGAGGGAAGGAGTACACCCAGTTGCA
GCTCCATCAGCAGCGCGCGCAGCGGCCTGTCGTGGCAGACCCGTAAACCA
AGCAACATATACACCGAGACCAGCAAGAGCGGCCAAAACATGAGCCCTGT
TAACTACATCGTGGCGACACGGCCATGGAGCTTTACGGTGCCGGTCATGG
GGGTGCTGCTGACCTCAGCTCTGGTGCACGCTCAGCACGGCATGCCTCTG
CTCAATAGAGGGTGCCTAGAGGTGATGACGCTGTGCATCTGCCTGCAGGC
CGCAGGCAACCTCCTCAACAGCGTCTTCGACTACACCTACGGCGTAGACA
ACCCAGCCACCATCGGCGACAGGTGCCTCGTCGACAAGAAAATCACAGTG
AGGGGAGCCCTGCTTTTTGCCTTGGTTCTTGCAACCGCCGGCAGCTGGCT
CGTCATCCCGAAACTGCTCGCCCCCGACCGGCAATTCCTCTACGTCTTCC
TCGCCTCCATCGCGCTGGCCGTGTCCTACACGGCACCGCCCTTTAAACTC
AAGTACAGGGCGATGGGGGACGCGGTCATCTTCATCTGCTTCGGACCGCT
GACGATGACGGGAGCGGCCATTGTGATGACGGGCGCGCCGCAGTACTGGG
TGCTCCCGTACGCGCTGCCTGTGACGCTCCTCACGGAGGCCATCCTGCAC
GCCAACAACACGCGCGACATCAAGGAGGACGCGCGCTGCGGCATCAAGAC
GGTGGCCATGCTGCTGGGCTATCAGCGCAGCCGCACGCTGTACTACGCCA
TGGTGGCGGGCGCGTACCTATCCGCGCTCACCCTCAGCATGCAGTACGTG
GGTTGCTGCCTCGTGCTGCTGAGCGTGCCGCTGGCGCTGAGCACGCTGCG
CTCATTCTCGCCGCCAACCATGGCCAACATGGACGAGAAGACGGCGCAGC
TGCACCTGCTCTTCAGCCTGCTGCTCAACGTCGGCGTCTATTACTCGCCT
GCAGTATAGCATATAGGTCGCGGTAGTGGCGCTGAAAGGGGAGTTGCTCA
GTCGCCGGTAGGTGTTGCTGTGCGCTGCGCAGCTTGCACAGGTACAGAGT
CGTTGCTGATGAGTTTACTACAAGTACAGACAAGCGCTGCCGCAAGCGGA
TTGGCATCAAATCATACAGCTGTGTTTTTACGATGA
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protein sequence of jgi.p|Trimin1|353867

>Trimin1|353867|estExt_Genemark1.C_Ctg_1900029 ID=Trimin1|353867|estExt_Genemark1.C_Ctg_1900029|Name=jgi.p|Trimin1|353867|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=290bp
MSPVNYIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCI
CLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATA
GSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFIC
FGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARC
GIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYVGCCLVLLSVPLAL
STLRSFSPPTMANMDEKTAQLHLLFSLLLNVGVYYSPAV*
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mRNA from alignment at Contig_190:201582..202917-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17165 ID=mRNA_17165|Name=jgi.p|Trimin1|353867|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1336bp|location=Sequence derived from alignment at Contig_190:201582..202917- (Tribonema minus UTEX_B_3156 )
CCGAGAAAGAGCGGGAGGAGGACATCCACCAGTTGAGTCGAAGCAACGCT TCAAACGAGTGGGAGGCAGCGCTTGCCCTAAGGCCCGCTCATAGAGATTG TTCAAGCGGCCGAGAAACCAGGAGCCCCAGTTCAGGGTGGCGCTCATACT GCACATCAAGCTGCGTTGCTGGAGGGAGGGAAGGAGTACACCCAGTTGCA GCTCCATCAGCAGCGCGCGCAGCGGCCTGTCGTGGCAGACCCGTAAACCA AGCAACATATACACCGAGACCAGCAAGAGCGGCCAAAACATGAGCCCTGT TAACTACATCGTGGCGACACGGCCATGGAGCTTTACGGTGCCGGTCATGG GGGTGCTGCTGACCTCAGCTCTGGTGCACGCTCAGCACGGCATGCCTCTG CTCAATAGAGGGTGCCTAGAGGTGATGACGCTGTGCATCTGCCTGCAGGC CGCAGGCAACCTCCTCAACAGCGTCTTCGACTACACCTACGGCGTAGACA ACCCAGCCACCATCGGCGACAGGTGCCTCGTCGACAAGAAAATCACAGTG AGGGGAGCCCTGCTTTTTGCCTTGGTTCTTGCAACCGCCGGCAGCTGGCT CGTCATCCCGAAACTGCTCGCCCCCGACCGGCAATTCCTCTACGTCTTCC TCGCCTCCATCGCGCTGGCCGTGTCCTACACGGCACCGCCCTTTAAACTC AAGTACAGGGCGATGGGGGACGCGGTCATCTTCATCTGCTTCGGACCGCT GACGATGACGGGAGCGGCCATTGTGATGACGGGCGCGCCGCAGTACTGGG TGCTCCCGTACGCGCTGCCTGTGACGCTCCTCACGGAGGCCATCCTGCAC GCCAACAACACGCGCGACATCAAGGAGGACGCGCGCTGCGGCATCAAGAC GGTGGCCATGCTGCTGGGCTATCAGCGCAGCCGCACGCTGTACTACGCCA TGGTGGCGGGCGCGTACCTATCCGCGCTCACCCTCAGCATGCAGTACGTG GGTTGCTGCCTCGTGCTGCTGAGCGTGCCGCTGGCGCTGAGCACGCTGCG CTCATTCTCGCCGCCAACCATGGCCAACATGGACGAGAAGACGGCGCAGC TGCACCTGCTCTTCAGCCTGCTGCTCAACGTCGGCGTCTATTACTCGCCT GCAGTATAGCATATAGGTCGCGGTAGTGGCGCTGAAAGGGGAGTTGCTCA GTCGCCGGTAGGTGTTGCTGTGCGCTGCGCAGCTTGCACAGGTACAGAGT CGTTGCTGATGAGTTTACTACAAGTACAGACAAGCGCTGCCGCAAGCGGA TTGGCATCAAATCATACAGCTGTGTTTTTACGATGA
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Coding sequence (CDS) from alignment at Contig_190:201582..202917-

>mRNA_17165 ID=mRNA_17165|Name=jgi.p|Trimin1|353867|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=870bp|location=Sequence derived from alignment at Contig_190:201582..202917- (Tribonema minus UTEX_B_3156 )
ATGAGCCCTGTTAACTACATCGTGGCGACACGGCCATGGAGCTTTACGGT
GCCGGTCATGGGGGTGCTGCTGACCTCAGCTCTGGTGCACGCTCAGCACG
GCATGCCTCTGCTCAATAGAGGGTGCCTAGAGGTGATGACGCTGTGCATC
TGCCTGCAGGCCGCAGGCAACCTCCTCAACAGCGTCTTCGACTACACCTA
CGGCGTAGACAACCCAGCCACCATCGGCGACAGGTGCCTCGTCGACAAGA
AAATCACAGTGAGGGGAGCCCTGCTTTTTGCCTTGGTTCTTGCAACCGCC
GGCAGCTGGCTCGTCATCCCGAAACTGCTCGCCCCCGACCGGCAATTCCT
CTACGTCTTCCTCGCCTCCATCGCGCTGGCCGTGTCCTACACGGCACCGC
CCTTTAAACTCAAGTACAGGGCGATGGGGGACGCGGTCATCTTCATCTGC
TTCGGACCGCTGACGATGACGGGAGCGGCCATTGTGATGACGGGCGCGCC
GCAGTACTGGGTGCTCCCGTACGCGCTGCCTGTGACGCTCCTCACGGAGG
CCATCCTGCACGCCAACAACACGCGCGACATCAAGGAGGACGCGCGCTGC
GGCATCAAGACGGTGGCCATGCTGCTGGGCTATCAGCGCAGCCGCACGCT
GTACTACGCCATGGTGGCGGGCGCGTACCTATCCGCGCTCACCCTCAGCA
TGCAGTACGTGGGTTGCTGCCTCGTGCTGCTGAGCGTGCCGCTGGCGCTG
AGCACGCTGCGCTCATTCTCGCCGCCAACCATGGCCAACATGGACGAGAA
GACGGCGCAGCTGCACCTGCTCTTCAGCCTGCTGCTCAACGTCGGCGTCT
ATTACTCGCCTGCAGTATAG
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