mRNA_17149 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|35794
Unique NamemRNA_17149
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|35794 vs. uniprot
Match: A0A836CII7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.100e-52
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:   37 MKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQTGMKDCCMVVGMAHMSGIERNLKLKYGFSAAAPACELVAQPA 291
            MKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQTGMKDCCMVVGMAHMSGIERNLKLKYGFSAAAPACELVAQPA
Sbjct:    1 MKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQTGMKDCCMVVGMAHMSGIERNLKLKYGFSAAAPACELVAQPA 85
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BLAST of jgi.p|Trimin1|35794 vs. uniprot
Match: A0A7S2WTZ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTZ5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.600e-10
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   31 ELMKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQTGMKDCCMVVGMAHMSGIERNLKLK 240
            EL+K+RDTV +L T ++RE PL+Y AM+ ERD YMA++    L  T       VVGMAHM GIE  L  K
Sbjct:  117 ELIKERDTVRQLTTELRREAPLIYDAMIGERDRYMAQS----LLGTSAAVTVGVVGMAHMDGIEAQLGWK 182
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BLAST of jgi.p|Trimin1|35794 vs. uniprot
Match: A0A6U5EEF9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5EEF9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.430e-10
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   31 ELMKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMA---EAVAQYLKQTGMKDCCMVVGMAHMSGIERNLKLK 240
            E +K R+ V  +M ++++ELP +YTA+VAERD YMA   + + +     GMK+   V+GMAH+ G+ER L+ K
Sbjct:  319 EALKTRENVRSIMNSLKKELPELYTALVAERDEYMANGLDIIGKNGASRGMKNAVAVMGMAHLDGVERYLQSK 391
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BLAST of jgi.p|Trimin1|35794 vs. uniprot
Match: L1JJY4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JJY4_GUITC)

HSP 1 Score: 57.8 bits (138), Expect = 6.110e-8
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   31 ELMKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQTGMKDCCMVVGMAHMSGIERNL 231
            E++K+R TV  +M  ++  LP VYTA++ ERD YMA ++   LK  G +    VVGMAHM GIE +L
Sbjct:  126 EMLKERRTVRGIMQTLKENLPEVYTALIGERDQYMANSL---LKANG-RTTVAVVGMAHMDGIEAHL 188
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BLAST of jgi.p|Trimin1|35794 vs. uniprot
Match: A0A7S0ADP1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ADP1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.400e-7
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:   31 ELMKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQTGMKDCCMVVGMAHMSGIERNLKLKYGFSAAAPACEL 276
            E +K RD V  +M  ++   P +Y AMVAERDAYMA  +    K         VVG+AH+ GIE NLK + G++  +  C+L
Sbjct:   32 ETIKARDNVRLVMVKLRETAPELYNAMVAERDAYMANGID---KLDQFDKMVAVVGIAHVDGIETNLKER-GWAPVSIPCQL 109
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BLAST of jgi.p|Trimin1|35794 vs. uniprot
Match: K0STV5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STV5_THAOC)

HSP 1 Score: 57.8 bits (138), Expect = 1.520e-7
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   31 ELMKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQY---LKQTGMKDCCMVVGMAHMSGIE 222
            E MK ++ V  +M A+++  P +YTAMVAERD YMA  + Q    L    +   C VVGMAH+ GIE
Sbjct:  342 ETMKAKENVKVIMGALKKSAPEIYTAMVAERDEYMANGLDQLDATLAGKKIDSTCAVVGMAHVDGIE 408
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BLAST of jgi.p|Trimin1|35794 vs. uniprot
Match: A0A7S3JSX9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSX9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.530e-6
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   31 ELMKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQ-TGMKDCCMVVGMAHMSGIERNL 231
            EL+K RDTV  ++ A++ + P +Y+A+V ERDA MA  + Q L      K    VVGMAH  GI R L
Sbjct:  245 ELIKHRDTVRNVIQALKSDAPQLYSALVDERDATMANNLIQVLDSPVPPKRVVFVVGMAHEDGIARRL 312
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BLAST of jgi.p|Trimin1|35794 vs. uniprot
Match: A0A7S0E6G0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E6G0_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 9.910e-6
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   31 ELMKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQTGMKDCCMVVGMAHMSGIE 222
            E++K+R+ V  L T +  E+P +Y A++AERDAYMA ++   L   G +    VVG+AH+ GIE
Sbjct:   33 EVLKQRENVRALSTYMMSEVPPLYDALIAERDAYMARSL---LGAEGTR-VVAVVGLAHVDGIE 92
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BLAST of jgi.p|Trimin1|35794 vs. uniprot
Match: A0A1Z5J846_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J846_FISSO)

HSP 1 Score: 51.6 bits (122), Expect = 2.210e-5
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   31 ELMKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQTGMKDCCM-VVGMAHMSGIERNLKLKYGFSAAAPAC 270
            E MK R+ V  +MT ++   P +   M+ ERDAYMA  +   L Q    +C + V+G+AHM G+E NLK + G++  AP C
Sbjct:  332 ESMKNRENVRAIMTELKEVAPALAQVMLTERDAYMATGI-DTLNQF---ECIVAVMGIAHMDGVENNLKGR-GWTQVAPNC 407
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BLAST of jgi.p|Trimin1|35794 vs. uniprot
Match: A0A7S2WKQ9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKQ9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.870e-5
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   31 ELMKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQTGMKDCCMVVGMAHMSGIERNLKLK 240
            E MK +D V  LM  ++   P +Y A+V+ERD +MA+ + + L Q  +     V+G+AH+ G+E NLK K
Sbjct:  158 ETMKAKDNVKLLMATLKESAPELYRALVSERDEFMADGLDR-LNQYSLT--VAVMGIAHVDGVENNLKEK 224
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|35794 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A836CII7_9STRA1.100e-52100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WTZ5_9STRA2.600e-1051.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U5EEF9_9STRA7.430e-1043.84Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
L1JJY4_GUITC6.110e-847.76Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0ADP1_9STRA1.400e-741.46Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
K0STV5_THAOC1.520e-746.27Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3JSX9_9STRA8.530e-645.59Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0E6G0_9EUKA9.910e-643.75Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A1Z5J846_FISSO2.210e-540.74Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2WKQ9_9STRA2.870e-540.00Hypothetical protein (Fragment) n=2 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_190contigContig_190:83388..85071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|35794|CE35793_48
DescriptionTraB family
COG categoryS
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG1916@1|root,KOG2860@2759|Eukaryota,2XCD1@2836|Bacillariophyta
Evalue6.47e-08
Seed ortholog159749.K0STV5
Hectar predicted targeting categoryother localisation
TranscriptId36116
TrackFilteredModels1
ProteinId35794
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|35794gene_17149Tribonema minus UTEX_B_3156 geneContig_190 83388..85071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17149_2exon_17149_2Tribonema minus UTEX_B_3156 exonContig_190 83388..83668 -
exon_17149_1exon_17149_1Tribonema minus UTEX_B_3156 exonContig_190 85042..85071 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17149UTR3_17149Tribonema minus UTEX_B_3156 three_prime_UTRContig_190 83388..83404 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17149CDS_17149Tribonema minus UTEX_B_3156 CDSContig_190 83405..83662 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17149UTR5_17149Tribonema minus UTEX_B_3156 five_prime_UTRContig_190 85042..85071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|35794Trimin1|35794|CE35793_48Tribonema minus UTEX_B_3156 polypeptideContig_190 83405..83662 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17149 ID=mRNA_17149|Name=jgi.p|Trimin1|35794|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=311bp|location=Sequence derived from alignment at Contig_190:83388..85071- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACGAGGCCGGTGTTGGGTTGGAGTGGGCATGAGCTCATGAAGAAGCGCGA
CACGGTGGACAAGCTCATGACGGCCGTGCAGCGCGAGCTGCCCCTCGTCT
ACACCGCCATGGTCGCGGAGCGCGACGCCTACATGGCGGAGGCGGTGGCG
CAGTACCTCAAGCAGACGGGCATGAAGGACTGCTGCATGGTCGTAGGGAT
GGCGCACATGAGCGGCATCGAGCGCAACCTCAAGTTGAAGTATGGTTTCA
GCGCGGCGGCGCCGGCGTGCGAGCTCGTGGCGCAGCCGGCGTGAGCAGCG
CGGTCAGTGGC
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protein sequence of jgi.p|Trimin1|35794

>Trimin1|35794|CE35793_48 ID=Trimin1|35794|CE35793_48|Name=jgi.p|Trimin1|35794|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=86bp
MKKRDTVDKLMTAVQRELPLVYTAMVAERDAYMAEAVAQYLKQTGMKDCC
MVVGMAHMSGIERNLKLKYGFSAAAPACELVAQPA*
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mRNA from alignment at Contig_190:83388..85071-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17149 ID=mRNA_17149|Name=jgi.p|Trimin1|35794|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1684bp|location=Sequence derived from alignment at Contig_190:83388..85071- (Tribonema minus UTEX_B_3156 )
ACGAGGCCGGTGTTGGGTTGGAGTGGGCATGTGAGTGAGTTTAGAGTGTG
ATGGCGTGACGATGCGACCAGACCTATGTCCCCACTTGAGTTGGTTTACA
CGGGGTGGTTGAATTTTACAAGTCATAGCCACTGTACTGCTTGACGGGGT
TGAAATGGCTCATCCCTTGTCACTGGACTAGCATGACAAGGTGCAGCGTC
GAACAATGGCAGTTACTTGGCAGTTACTCGGACTCTGGCACGTTGCTGTT
TTGACAGCATGCGGTCCATATCAGTGCAAGTGAAGCATCAATCGAGAAAT
GGGGCACAGCCACAATTTTGATGTTTGCATGCGTTCAGCATGCTTGGCCT
CTATACTGGATTTTATATACTGAATCACGTATACTGAATCACGTCACGTG
ATTCAGTATATGAAATCCAGTACCGTGATTCAGTATATAAAATCCAGTAC
CAATTGCACGTGATTCACGTGCAATTGGTGCTGGTCAGCATGAGTTCAGG
TCTACACTGGGTCAGCGTCACAAGTGGCAGTGCTCACCTGTAGGAATGAA
GTTCACGCACGCATTGGTGGGGATGATTGAAATGCATTGCGACAGTCACA
ATACAGTGTTGTGACTGTTGCAATGGTAATTATACTGCATGGTATTGCTG
TGGCATGCTGGCAGCAGTGCACGTACACGTTCATGTGCCTGTGGAATAAT
CATCTGGCTATCTACGCTGTGAATCATTATCTGGCCTTTACATGGTGCAA
CAATTGATGGTCAATGGCACGGCCCTTTGTCCTGCCAGCAACTTGCTGAA
CAATCCAACTGCAAAGACAAGTATGCTGTACGTGACCCATTCTCCAGGTA
GAGTAGAAGGGGTAGACGTGCGTGCAACCTTCTCTGTGCGATGCACACAG
TCAATGGGGGGTACAGTGAAGATTTGCGGTTGGAGAGCATGAACTTGCGT
GACGTGTGCGATCTGCTTCTCCAAAAGTGCTGTCCCCACGCTTGCTTATT
GTGCCTAATCAATCCATGTGCAAGCAACCTGATGCTCATTTCATAAACAT
CAAATGAAGCTCAGCAGAATATCTTCACACAATCTTGCAGCTTTGAGTAC
CGCCAGCAGCCGTCCGTGATACCCAAGTTGTATCTCACAGTACAACCTGA
ACCCGTGATTCCCACTACCTGCTGTCTACCATTCCTGCCTTTGCTATGCG
CGCATCACTGGTGCACAGGAGCTCACAAAACCCGCGTACTACAGTAGGTT
TCAGTAACAGCGACCATCGATACCGTATGAAACAGCACAACTCTGTGTTG
GTCCCTGAGTGACCCTGAAGCCAAAACACTTGCATGTCATCAGTCATCGT
TCATTCACCACCGTTGCCGTCGCACTTGTTACCTGCGCATCACGACACCG
CAGGAGCTCATGAAGAAGCGCGACACGGTGGACAAGCTCATGACGGCCGT
GCAGCGCGAGCTGCCCCTCGTCTACACCGCCATGGTCGCGGAGCGCGACG
CCTACATGGCGGAGGCGGTGGCGCAGTACCTCAAGCAGACGGGCATGAAG
GACTGCTGCATGGTCGTAGGGATGGCGCACATGAGCGGCATCGAGCGCAA
CCTCAAGTTGAAGTATGGTTTCAGCGCGGCGGCGCCGGCGTGCGAGCTCG
TGGCGCAGCCGGCGTGAGCAGCGCGGTCAGTGGC
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Coding sequence (CDS) from alignment at Contig_190:83388..85071-

>mRNA_17149 ID=mRNA_17149|Name=jgi.p|Trimin1|35794|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=258bp|location=Sequence derived from alignment at Contig_190:83388..85071- (Tribonema minus UTEX_B_3156 )
ATGAAGAAGCGCGACACGGTGGACAAGCTCATGACGGCCGTGCAGCGCGA
GCTGCCCCTCGTCTACACCGCCATGGTCGCGGAGCGCGACGCCTACATGG
CGGAGGCGGTGGCGCAGTACCTCAAGCAGACGGGCATGAAGGACTGCTGC
ATGGTCGTAGGGATGGCGCACATGAGCGGCATCGAGCGCAACCTCAAGTT
GAAGTATGGTTTCAGCGCGGCGGCGCCGGCGTGCGAGCTCGTGGCGCAGC
CGGCGTGA
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