mRNA_17099 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154069
Unique NamemRNA_17099
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Match: A0A835Z1G7_9STRA (Guanine nucleotide exchange factor in Golgi transport N-terminal-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G7_9STRA)

HSP 1 Score: 269 bits (688), Expect = 2.750e-91
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1
Query:    1 LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 414
            LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK
Sbjct:    1 LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 138          
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Match: F0XZH5_AURAN (Sec7_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZH5_AURAN)

HSP 1 Score: 167 bits (422), Expect = 1.170e-50
Identity = 84/137 (61.31%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    4 LRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 414
            L LEL+L +LE +GP+FR G  FV  VR  LC  LLKNCTS+V  VV+LSLRIFVAL   F+DHLK+E+EVF+  IFLRIL+S+N +HE KMLVLEVF+ LC D  +LVEIFL+YD D  ++D+FK IV ++A+V K
Sbjct:    6 LSLELLLSVLEHAGPSFRGGARFVGAVRQYLCVSLLKNCTSNVTHVVALSLRIFVALISKFRDHLKAEIEVFIHHIFLRILDSDNSTHEHKMLVLEVFHKLCGDTDSLVEIFLSYDADFESVDVFKHIVVALARVVK 142          
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Match: A0A7S3YKY5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKY5_HETAK)

HSP 1 Score: 160 bits (406), Expect = 4.080e-48
Identity = 85/138 (61.59%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 414
            LL LEL+L  +E +GPAFR    FV  VR  LC  LL NCT     VV LSLR+FV L  HFKD LKSE+EVF+  IFL+IL+S N ++E K LVLEVF  LC DP AL E+FLNYDCDL A+DLF+RIV +MAKV K
Sbjct:   16 LLSLELLLAAMEGAGPAFRRQPKFVYAVRHYLCKALLTNCTLHFTQVVGLSLRLFVTLVAHFKDELKSEIEVFIASIFLKILDSPNSTNEHKTLVLEVFCTLCEDPAALAELFLNYDCDLGALDLFQRIVGAMAKVGK 153          
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Match: A0A7S2RK43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK43_9STRA)

HSP 1 Score: 163 bits (413), Expect = 7.420e-48
Identity = 83/138 (60.14%), Postives = 104/138 (75.36%), Query Frame = 1
Query:    1 LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 414
            LL LE +L +LE SGP+F+S + F+  VR  LC  LLKNCTSS   VV LSLR+FV L   FKDHLK+E+EVF++ IFLRILES+N + E K LVLEVF+ +C D +ALVEIFLNYDC+   +DLF+ IV S+ +VAK
Sbjct:   45 LLSLEFLLTVLEHSGPSFKSSDKFIFAVRQYLCVSLLKNCTSSSTNVVDLSLRLFVRLIAQFKDHLKAEIEVFISNIFLRILESQNSTFEHKRLVLEVFHAICQDAQALVEIFLNYDCNFEHVDLFRSIVLSLERVAK 182          
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Match: A0A4D9CUH3_9STRA (SEC7 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUH3_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.200e-46
Identity = 85/137 (62.04%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    1 LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVA 411
            +L LEL+L  LE++GP FRS E FV  VR  LC+ LLKN TSS    V LSLRIF+A+T HFKD LK+E++VFV+ IFL++LESEN S E K+LVL+VF +LC DPR L+EIFLNYDCDL A  +F RIV +++KVA
Sbjct:  389 ILSLELLLSTLERAGPTFRSSEKFVYLVRNHLCSSLLKNATSSNTATVGLSLRIFIAMTAHFKDSLKAELDVFVSNIFLKLLESENSSFEHKLLVLQVFQNLCEDPRLLIEIFLNYDCDLGATSMFSRIVLALSKVA 525          
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Match: A0A7S2AZJ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZJ8_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.870e-44
Identity = 74/138 (53.62%), Postives = 103/138 (74.64%), Query Frame = 1
Query:    1 LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 414
            +L L+L+L ++  +GPAFR+ + FV  +R  LC  LL+N T++V  +V LSL++FV L  HFKDHLK+E+EVF+T+IFLRILES N +   K +VL VF+ LC DP AL+EIFLNYD D  ++DLF+ IV ++A+ AK
Sbjct:  115 ILSLQLLLSVIMNAGPAFRTNDKFVQAIRQYLCVSLLRNSTTNVPRIVDLSLQVFVQLITHFKDHLKAEIEVFITKIFLRILESANSTFHHKSVVLHVFHQLCLDPDALIEIFLNYDADFDSVDLFRHIVDALARCAK 252          
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Match: A0A6H5KHB1_9PHAE (Sec7_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB1_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.050e-43
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   10 LELVLELLEK-SGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 414
            LEL++ +L+   GP FR+       VR  LCA LL +CTS+V  VVSLSLR+FVAL + FKDHLK+E+EVF+T IFLRILESE+ + + KMLVLEV   LC DP ALVE+F+NYDCDL AIDLFKRI  ++ KVAK
Sbjct:  287 LELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGVVSLSLRVFVALIKGFKDHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLALVEMFVNYDCDLQAIDLFKRIATALVKVAK 422          
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Match: A0A1V9ZTE7_9STRA (Brefeldin A-inhibited guanine nucleotide-exchange protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTE7_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.320e-43
Identity = 81/138 (58.70%), Postives = 102/138 (73.91%), Query Frame = 1
Query:    1 LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 414
            L+ L+L+L +L  SGP FRSG+ F+  VR  LC  LL+NCTS+   +V LSLR+FV L  HFK HLK+E+EVF+T IFL ILESEN S E K+LVLEV   +C D   L EIFLNYDCD  ++DLFKRIV +++K+AK
Sbjct:  338 LVSLDLLLSILNHSGPTFRSGDKFLQLVRQYLCVSLLQNCTSNYTQIVELSLRVFVELIAHFKAHLKAEIEVFITNIFLGILESENSSLEHKLLVLEVLKQICADGSILGEIFLNYDCDWNSMDLFKRIVTAISKIAK 475          
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Match: W2QLJ3_PHYPN (SEC7 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2QLJ3_PHYPN)

HSP 1 Score: 160 bits (406), Expect = 4.540e-43
Identity = 78/138 (56.52%), Postives = 105/138 (76.09%), Query Frame = 1
Query:    1 LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 414
            +L LELV E+LE +GP+FR GE FV  +R  LC  LL+NCTS+   +VSLSL++F+ L R+FK HLK+E+++F+T IFLR+L+SEN S E K+LVLE  + +C DP+ L EIF+NYDCD    DLFK+IV ++AK AK
Sbjct:  406 ILSLELVKEILENAGPSFRRGERFVHAIRQYLCQSLLQNCTSNYTQIVSLSLQVFLVLLRNFKRHLKTELDIFITSIFLRLLQSENASFEHKLLVLEALHAICDDPQTLGEIFINYDCDWNTNDLFKQIVHALAKAAK 543          
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Match: G4ZJZ8_PHYSP (SEC7 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZJZ8_PHYSP)

HSP 1 Score: 160 bits (406), Expect = 4.540e-43
Identity = 78/138 (56.52%), Postives = 105/138 (76.09%), Query Frame = 1
Query:    1 LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 414
            +L LELV E+LE +GP+FR GE FV  +R  LC  LL+NCTS+   +VSLSL++F+ L R+FK HLK+E+++F+T IFLR+L+SEN S E K+LVLE  + +C DP+ L EIF+NYDCD    DLFK+IV ++AK AK
Sbjct:  411 ILSLELVKEILENAGPSFRRGERFVHAIRQYLCQSLLQNCTSNYTQIVSLSLQVFLVLLRNFKRHLKTELDIFITSIFLRLLQSENASFEHKLLVLEALHAICDDPQTLGEIFINYDCDWNTNDLFKQIVHALAKAAK 548          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154069 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1G7_9STRA2.750e-91100.00Guanine nucleotide exchange factor in Golgi transp... [more]
F0XZH5_AURAN1.170e-5061.31Sec7_N domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S3YKY5_HETAK4.080e-4861.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RK43_9STRA7.420e-4860.14Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9CUH3_9STRA9.200e-4662.04SEC7 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S2AZJ8_9STRA1.870e-4453.62Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5KHB1_9PHAE1.050e-4361.76Sec7_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A1V9ZTE7_9STRA3.320e-4358.70Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
W2QLJ3_PHYPN4.540e-4356.52SEC7 domain-containing protein n=16 Tax=Phytophtho... [more]
G4ZJZ8_PHYSP4.540e-4356.52SEC7 domain-containing protein n=5 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_209contigContig_209:53669..54713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154069|gw1.209.36.1
BRITEko00000,ko00001,ko04131
KEGG Pathwayko04144,map04144
KEGG koko:K18442
Descriptionregulation of ARF protein signal transduction
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5307@1|root,KOG0929@2759|Eukaryota
Evalue1.92e-51
Seed ortholog44056.XP_009033722.1
Hectar predicted targeting categoryother localisation
TranscriptId154391
TrackFilteredModels1
ProteinId154069
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154069gene_17099Tribonema minus UTEX_B_3156 geneContig_209 53669..54713 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17099_1exon_17099_1Tribonema minus UTEX_B_3156 exonContig_209 53669..53944 +
exon_17099_2exon_17099_2Tribonema minus UTEX_B_3156 exonContig_209 54576..54713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17099CDS_17099Tribonema minus UTEX_B_3156 CDSContig_209 53669..53944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154069Trimin1|154069|gw1.209.36.1Tribonema minus UTEX_B_3156 polypeptideContig_209 53669..54713 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17099 ID=mRNA_17099|Name=jgi.p|Trimin1|154069|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=414bp|location=Sequence derived from alignment at Contig_209:53669..54713+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGCGCCTTGAGCTCGTGCTCGAGCTGCTCGAGAAGAGCGGTCCCGC
GTTCCGCAGCGGCGAGCCCTTCGTCGACTGCGTGCGCACGGGGCTGTGCG
CGGAGCTCCTCAAGAACTGCACGAGCAGCGTGATGCCGGTCGTGTCGCTG
TCGCTGCGCATCTTCGTGGCGCTCACGCGGCACTTCAAGGACCACCTGAA
GTCGGAGGTTGAAGTCTTCGTCACGCGCATCTTCCTGCGCATCCTCGAAA
GCGAGAACCGCTCACACGAGCAGAAGATGCTGGTGCTGGAGGTGTTCTAC
GACCTCTGCACGGACCCGCGCGCGCTCGTTGAGATCTTCCTCAACTACGA
CTGCGACCTCTACGCCATCGACCTCTTCAAGCGCATCGTCGCGTCCATGG
CCAAGGTCGCTAAG
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protein sequence of jgi.p|Trimin1|154069

>Trimin1|154069|gw1.209.36.1 ID=Trimin1|154069|gw1.209.36.1|Name=jgi.p|Trimin1|154069|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=138bp
LLRLELVLELLEKSGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSL
SLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFY
DLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK
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mRNA from alignment at Contig_209:53669..54713+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17099 ID=mRNA_17099|Name=jgi.p|Trimin1|154069|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1045bp|location=Sequence derived from alignment at Contig_209:53669..54713+ (Tribonema minus UTEX_B_3156 )
CTGCTGCGCCTTGAGCTCGTGCTCGAGCTGCTCGAGAAGAGCGGTCCCGC GTTCCGCAGCGGCGAGCCCTTCGTCGACTGCGTGCGCACGGGGCTGTGCG CGGAGCTCCTCAAGAACTGCACGAGCAGCGTGATGCCGGTCGTGTCGCTG TCGCTGCGCATCTTCGTGGCGCTCACGCGGCACTTCAAGGACCACCTGAA GTCGGAGGTTGAAGTCTTCGTCACGCGCATCTTCCTGCGCATCCTCGAAA GCGAGAACCGCTCACACGAGCAGAAGGTGGGTAGCCCTAACCTAACCATA ACCCTGACCCTAATTCAACTGTCAGGACCTTGGTGTATGCTGCGAAGAAG CATCAGTTGATCATTGAGAGCAAGAGAGTCATCTGGATAAATGCGGGGGT GGGGGAGGGGAGGGGGGGGGGGGAGGTTGTACACTCAATCCGGCTTGCCC CCTGTGGTTGGTTTGCATGGTAAGGCAGGCGCAACTTTGGGTTAGCATCA GGGTTAGTATTCTCGCAAATGGCCCTGCAGCGTCTTCTATGCTGCTGCGC TATAGGCATTACGTTGCGCGCCCTGCACGGAGATGCTCCTCCCCAGCAAG CCACAGGGGACAATTGCATGCCTCTCTGGTTTGACGCGCGCCGCCCCCTG CCTCTTTGACTTACCTGCCAACGTCGCTCATCCCCCCCCCCCCCCCCCCC CCCAGATGTTCTACGACCTCTGCACCTCTGCACGAACTCGCGCGCATCAT CACGACGCTCCGTTGCGTGGCAAGGTCGCCGGCTCATGCGCACATTGGCG AGATTCTGGGCTGCTGCGTGTCAATTGCGCCCGCCTGCTGCCTCTTGACA CACCTGCCTGCGCCGCTCCCCCCCCCCCCCCCCCCCTTTTCATGCCCCCC CCCTCAGATGCTGGTGCTGGAGGTGTTCTACGACCTCTGCACGGACCCGC GCGCGCTCGTTGAGATCTTCCTCAACTACGACTGCGACCTCTACGCCATC GACCTCTTCAAGCGCATCGTCGCGTCCATGGCCAAGGTCGCTAAG
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Coding sequence (CDS) from alignment at Contig_209:53669..54713+

>mRNA_17099 ID=mRNA_17099|Name=jgi.p|Trimin1|154069|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=414bp|location=Sequence derived from alignment at Contig_209:53669..54713+ (Tribonema minus UTEX_B_3156 )
CTGCTGCGCCTTGAGCTCGTGCTCGAGCTGCTCGAGAAGAGCGGTCCCGC
GTTCCGCAGCGGCGAGCCCTTCGTCGACTGCGTGCGCACGGGGCTGTGCG
CGGAGCTCCTCAAGAACTGCACGAGCAGCGTGATGCCGGTCGTGTCGCTG
TCGCTGCGCATCTTCGTGGCGCTCACGCGGCACTTCAAGGACCACCTGAA
GTCGGAGGTTGAAGTCTTCGTCACGCGCATCTTCCTGCGCATCCTCGAAA
GCGAGAACCGCTCACACGAGCAGAAGATGCTGGTGCTGGAGGTGTTCTAC
GACCTCTGCACGGACCCGCGCGCGCTCGTTGAGATCTTCCTCAACTACGA
CTGCGACCTCTACGCCATCGACCTCTTCAAGCGCATCGTCGCGTCCATGG
CCAAGGTCGCTAAG
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