mRNA_17043 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A835Z957_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z957_9STRA) HSP 1 Score: 570 bits (1468), Expect = 4.480e-204 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1
Query: 1 MDEFASKTLKRVRSVRTERLHLVSTANLPTPAMEQAAIVTGSKPXXXXXXXXXXXXXXXXXVDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGVANIREVLLVSWGXXXXXXXXXXXXXXAGLTEAMHEDEEEDVQE 966
MDEFASKTLKRVRSVRTERLHLVSTANLPTPAMEQAAIVTGSKPXXXXXXXXXXXXXXXXXVDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGVANIREVLLVSWGXXXXXXXXXXXXXXAGLTEAMHEDEEEDVQE
Sbjct: 1 MDEFASKTLKRVRSVRTERLHLVSTANLPTPAMEQAAIVTGSKPXXXXXXXXXXXXXXXXXVDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGVANIREVLLVSWGXXXXXXXXXXXXXXAGLTEAMHEDEEEDVQE 322
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A6H5JBA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA0_9PHAE) HSP 1 Score: 189 bits (479), Expect = 8.220e-54 Identity = 113/255 (44.31%), Postives = 140/255 (54.90%), Query Frame = 1
Query: 184 VDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVY--------GPEKMAG------KRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLAD-DGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPP-----------MACETACVIDTGVANIREVLLVSW 870
V EE+DLVPG+YEGGLKVWE S+DL+E++L G + G K V+ELGCGHG PG+ AL+QG V F+D+NREV+E TIPNVR N EA L A +Y GDW L +L + DG FDLILTAETLYT ++ ++ LAPGG ALVA+KR+YFG GGS +F++ +A + C A VIDTG NIREVL VSW
Sbjct: 95 VPEESDLVPGLYEGGLKVWEASLDLVEHLLSNSSSSPMGLDGGSGEDGSVGSGTGRPKSVLELGCGHGFPGIVALQQGVRVCFSDFNREVIEQVTIPNVRLNV-EAHHWPL----------------------------AEYYSGDWSSLSPLLEERDGGGLFDLILTAETLYTTAVADKVLDMVGRHLAPGGQALVASKRFYFGTGGSTQYFREAIAARCNSAAVEASRRLVCSDAAVIDTGKGNIREVLRVSW 320
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: D8LRL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL4_ECTSI) HSP 1 Score: 188 bits (478), Expect = 2.480e-53 Identity = 112/255 (43.92%), Postives = 140/255 (54.90%), Query Frame = 1
Query: 184 VDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVY--------GPEKMAG------KRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLAD-DGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPP-----------MACETACVIDTGVANIREVLLVSW 870
V EE+DLVPG+YEGGLKVWE S+DL+E++L G + G K V+ELGCGHG PG+ AL+QG V F+D+NREV+E TIPNVR N EA L A +Y GDW L +L + DG FDLILTAETLYT ++ ++ LAPGG ALVA+KR+YFG GGS +F++++A + C VIDTG NIREVL VSW
Sbjct: 125 VPEESDLVPGLYEGGLKVWEASLDLVEHLLSNSSSCPVGLDGGSGGDASVGSGTGRPKSVLELGCGHGFPGIVALQQGVRVCFSDFNREVIEQVTIPNVRLNV-EAHHWPL----------------------------AEYYSGDWSSLSPLLEERDGGGLFDLILTAETLYTTAVADKVLDMVARHLAPGGQALVASKRFYFGTGGSTQYFREVIAARRCSAAAEASRRLVCSDVAVIDTGKGNIREVLRVSW 350
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A6G0X3U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3U9_9STRA) HSP 1 Score: 173 bits (439), Expect = 9.470e-49 Identity = 104/229 (45.41%), Postives = 130/229 (56.77%), Query Frame = 1
Query: 196 TDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAH-VVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAP-GGHALVAAKRYYFGCGGSCAHFKQLVAPP--MACETACVIDTGVANIREVLLVSW 870
+D+ GVYEGG K+WE +VDLI++M+ + G RV+ELGCGHGLPG+YAL QGA VVF+DYN EV+E ATIPNV N P A P A F GDWG + ++L G FDLILTAETLYT + TV + I+ L GG ALVAAK YYFG GGS HFKQL+A M+ +T G + +RE++ V +
Sbjct: 80 SDIQTGVYEGGFKLWEGAVDLIQFMIANTN---EPPIRGCRVMELGCGHGLPGIYALHQGAREVVFSDYNSEVIELATIPNVLRNAPHAKP------------------------------HATFISGDWGLMADLLPG-GSADFDLILTAETLYTESVTVDLFHTIQRYLKKRGGVALVAAKTYYFGTGGSVHHFKQLIARDGSMSAQTVWESSDGRSTVREIVRVEY 274
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: T0R0A7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R0A7_SAPDV) HSP 1 Score: 173 bits (438), Expect = 1.130e-48 Identity = 101/227 (44.49%), Postives = 130/227 (57.27%), Query Frame = 1
Query: 199 DLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGA-HVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPP--MACETACVIDTGVANIREVLLVSW 870
DL GVYEGG K+WECS+DLIEY L + + P G RV+ELGCGHGLPG++AL+QGA HV+F+DYN EV+E ATIPN + L A+FY GDW + E +A + + +DL+LTAETLYT T+ + +I+ L G ALVAAK YYFG GGS HFK LVA M T + +NIRE++ V++
Sbjct: 77 DLETGVYEGGFKLWECSIDLIEY-LQQHQADFPIGACGLRVMELGCGHGLPGIFALQQGASHVLFSDYNSEVIELATIPNTMRCAGDRLH------------------------------HASFYSGDWANVSEAMAANEDASYDLVLTAETLYTEDVTISLLAMIKRHLKRSGVALVAAKTYYFGTGGSVHHFKDLVAREGDMVATTVWNGNDCRSNIREIVQVTY 272
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A1V9YGQ4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGQ4_9STRA) HSP 1 Score: 172 bits (435), Expect = 3.340e-48 Identity = 107/235 (45.53%), Postives = 135/235 (57.45%), Query Frame = 1
Query: 196 TDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGA-HVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAG-GRAAFYFGDWGGLPE-MLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGV-------ANIREVLLVSW 870
+DL GVYEGG K+WECSVDLIEY+ E +G + RV+ELGCGHGLPG+YAL+QGA HV+F+DYN EV++ ATIPN AQ V +A RA FY GDWG + M A + + +DLILTAETLYT T+ + I+ L P G ALVAAK YYFG GGS H K L+A T ++ T V +NIRE++ V++
Sbjct: 77 SDLETGVYEGGFKLWECSVDLIEYLEAHKEAFGIGTRS-LRVMELGCGHGLPGIYALQQGAAHVLFSDYNSEVIDLATIPN-------------------------------AQRVASAHLNRATFYSGDWGHMSAAMTAANEDTEYDLILTAETLYTEEVTIALLETIKRHLKPSGVALVAAKTYYFGTGGSVHHLKSLIA-----ATGTMVATTVWNGNDCRSNIREIVQVTY 274
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A024UPA8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPA8_9STRA) HSP 1 Score: 167 bits (423), Expect = 2.610e-46 Identity = 103/230 (44.78%), Postives = 135/230 (58.70%), Query Frame = 1
Query: 196 TDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGA-HVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPE-MLADDGEERFDLILTAETLYTATATVQIHRLIET-LLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPP--MACETACVIDTGVANIREVLLVSW 870
+D+ GVYEGG K+WEC+VDLI+Y+ G RV+ELGCGHGLPG++AL+QGA HV F+DYN EV+E ATIPN++ N A + L+ +A FY GDW + E MLA + FDLILTAET+YT + +V++ + I+ L GG ALVAAK YYFG GGS HFK LVA M T + +N+RE++ VS+
Sbjct: 85 SDIQTGVYEGGFKLWECAVDLIQYLAANAPNLPVHN--GWRVLELGCGHGLPGLHALQQGAAHVTFSDYNHEVIELATIPNLQRN---ANANDLT--------------------------KATFYSGDWQLMSEDMLAHGTDMEFDLILTAETIYTESVSVELFQTIQRHLKRRGGIALVAAKSYYFGTGGSVHHFKSLVAQDGTMVARTVWESNDAKSNVREIVHVSY 283
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: L8HD02_ACACA (Methyltransferase domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HD02_ACACA) HSP 1 Score: 162 bits (409), Expect = 1.810e-44 Identity = 93/228 (40.79%), Postives = 125/228 (54.82%), Query Frame = 1
Query: 196 TDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPEALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPG-GHALVAAKRYYFGCGGSCAHFKQLVAPPMACETAC--VIDTGVANIREVLLVSW 870
+DL PGVYEGG K+WE + DL+ ++ + +V+G AGK+V+ELGCGHG+PG+Y +QGA V DYN EVLE TIPN R N E ++ R FY GDWG L E+L +D+ILTAET+Y + ++ LI+ L P G VAAK YYF GG C F+++V ET VI G +N+RE++ VS+
Sbjct: 63 SDLAPGVYEGGFKLWEGAADLVAHLQETEKVHGVS-YAGKKVLELGCGHGVPGIYLWKQGAEVHLQDYNSEVLELLTIPNARLNAAEENKETME--------------------------RVEFYSGDWGLLTELLP---RHAYDVILTAETIYNVQSLPRLFALIKHCLKPPHGVCYVAAKNYYFSVGGGCRQFEEMVKKDGLFETTVEKVIKDGSSNVREIIKVSF 260
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: UPI000719D9A5 (histidine protein methyltransferase 1 homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D9A5) HSP 1 Score: 163 bits (413), Expect = 1.980e-44 Identity = 97/236 (41.10%), Postives = 126/236 (53.39%), Query Frame = 1
Query: 184 VDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCPE-------ALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYFGDWGGLPEMLADDGEERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGVANIREVLLVSW 870
V +++D++P VYEGGLK+WECS+DL+EY+ + AG V+ELGCG LPG++AL QGA VVF DYN EVLE TIPNV N P+ ALP GR F+ GDWG L E + + RFD+ILT+ET+Y+ A ++ LI+ +L P G A VAAK +YFG GG F LV A T RE+L++ W
Sbjct: 113 VTQDSDIIPLVYEGGLKIWECSLDLVEYLASSDVDF-----AGANVLELGCGAALPGIHALGQGASVVFQDYNAEVLELVTIPNVVNNTPDDDDDRVAALP-----------------------------GRCQFWAGDWGAL-ERKWKELQLRFDVILTSETIYSEAAQPHLYSLIKAVLKPAGAAYVAAKVHYFGVGGGTRQFVHLVEEDGAFNVTTCFATESGLRREILMMRW 313
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Match: A0A1S8W1C2_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W1C2_9FUNG) HSP 1 Score: 161 bits (407), Expect = 2.510e-44 Identity = 88/227 (38.77%), Postives = 131/227 (57.71%), Query Frame = 1
Query: 184 VDEETDLVPGVYEGGLKVWECSVDLIEYMLDRPEVYGPEKMAGKRVIELGCGHGLPGVYALRQGAHVVFTDYNREVLEHATIPNVRANCP-EALPSSLSIDTSGGRGGGMSAGQGSAQGVVNAGGRAAFYF-GDWGGLPEMLADDGE-ERFDLILTAETLYTATATVQIHRLIETLLAPGGHALVAAKRYYFGCGGSCAHFKQLVAPPMACETACVIDTGVANIREV 855
+++++DL+ GVYEGGLK WECS+DL+EY+ + YG ++M+ R++ELGCG LPG+Y LR GAHV F DYN V+ TIPN+ N + P +S + G + V + + +F GDWG + E++ + ++D++LT+E++Y A + LI+ ++ PGG ALVAAK YFGC GS F QL +C+ +DT N V
Sbjct: 31 IEQQSDLITGVYEGGLKTWECSIDLVEYL---EQTYGQQRMSNLRILELGCGSALPGIYCLRLGAHVDFQDYNEPVIHMITIPNILLNTSSQPTPDLISPE-----------GTFETELVYDPATTPSLFFSGDWGNMLELMQNANLLHQYDIVLTSESIYEAKCQKDLFSLIKGVVRPGGIALVAAKSVYFGCSGSLNDFCQLAEASESCK----VDTVAVNATTV 239 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353472 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17043 ID=mRNA_17043|Name=jgi.p|Trimin1|353472|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=969bp|location=Sequence derived from alignment at Contig_165:199831..204245- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACGAATTTGCGTCGAAAACACTGAAGCGGGTCAGGTCTGTGCGCACback to top protein sequence of jgi.p|Trimin1|353472 >Trimin1|353472|estExt_Genemark1.C_Ctg_1650016 ID=Trimin1|353472|estExt_Genemark1.C_Ctg_1650016|Name=jgi.p|Trimin1|353472|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=323bp MDEFASKTLKRVRSVRTERLHLVSTANLPTPAMEQAAIVTGSKPPKTTMLback to top mRNA from alignment at Contig_165:199831..204245- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17043 ID=mRNA_17043|Name=jgi.p|Trimin1|353472|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4415bp|location=Sequence derived from alignment at Contig_165:199831..204245- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_165:199831..204245- >mRNA_17043 ID=mRNA_17043|Name=jgi.p|Trimin1|353472|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=969bp|location=Sequence derived from alignment at Contig_165:199831..204245- (Tribonema minus UTEX_B_3156 )back to top |