mRNA_17018 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178405
Unique NamemRNA_17018
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178405 vs. uniprot
Match: A0A835Z6T9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T9_9STRA)

HSP 1 Score: 320 bits (821), Expect = 1.660e-110
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1 
Query:    1 MTAHDADLQRYCELIIGAMRAHDTSAAVQQAGLRAMFGAASSCQGLLALGAGEVFARALLSHAGHAGVLDEGILVLAAITRDRATHGPMGAAGACEALVQALSERLSADVDAKVVAGGLWAIYHLAADDANRGRLSVAGAEELVLGIMQHYLEDGFVQGAGQQAATRLIQ 510
            MTAHDADLQRYCELIIGAMRAHDTSAAVQQAGLRAMFGAASSCQGLLALGAGEVFARALLSHAGHAGVLDEGILVLAAITRDRATHGPMGAAGACEALVQALSERLSADVDAKVVAGGLWAIYHLAADDANRGRLSVAGAEELVLGIMQHYLEDGFVQGAGQQAATRLIQ
Sbjct:    1 MTAHDADLQRYCELIIGAMRAHDTSAAVQQAGLRAMFGAASSCQGLLALGAGEVFARALLSHAGHAGVLDEGILVLAAITRDRATHGPMGAAGACEALVQALSERLSADVDAKVVAGGLWAIYHLAADDANRGRLSVAGAEELVLGIMQHYLEDGFVQGAGQQAATRLIQ 170
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178405 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z6T9_9STRA1.660e-110100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_169contigContig_169:206524..207036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178405|e_gw1.169.6.1
Hectar predicted targeting categoryother localisation
TranscriptId178727
TrackFilteredModels1
ProteinId178405
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178405gene_17018Tribonema minus UTEX_B_3156 geneContig_169 206524..207036 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17018_1exon_17018_1Tribonema minus UTEX_B_3156 exonContig_169 206524..207036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17018CDS_17018Tribonema minus UTEX_B_3156 CDSContig_169 206524..207036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178405Trimin1|178405|e_gw1.169.6.1Tribonema minus UTEX_B_3156 polypeptideContig_169 206524..207036 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17018 ID=mRNA_17018|Name=jgi.p|Trimin1|178405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=513bp|location=Sequence derived from alignment at Contig_169:206524..207036- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCACATGATGCTGACTTACAGCGGTACTGCGAGCTCATCATTGG
TGCCATGCGCGCGCATGATACCAGTGCCGCGGTGCAGCAAGCGGGACTCC
GCGCAATGTTCGGCGCCGCCTCCAGCTGTCAGGGTCTCCTTGCGCTGGGG
GCCGGGGAGGTGTTCGCGAGGGCCCTGCTCTCTCACGCAGGGCATGCAGG
TGTGCTGGACGAGGGCATTCTGGTGCTGGCGGCGATCACCAGAGATCGAG
CAACGCACGGACCAATGGGCGCAGCTGGTGCATGCGAGGCTCTGGTGCAA
GCCCTCTCGGAACGCCTTAGCGCAGACGTCGATGCAAAGGTGGTGGCAGG
GGGCCTGTGGGCAATATACCACCTAGCAGCTGATGATGCAAACAGAGGTC
GATTGTCAGTTGCAGGTGCGGAAGAGCTGGTATTAGGCATTATGCAACAT
TATCTTGAAGATGGTTTTGTGCAGGGCGCTGGCCAGCAGGCTGCAACTCG
CCTGATTCAGTGA
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protein sequence of jgi.p|Trimin1|178405

>Trimin1|178405|e_gw1.169.6.1 ID=Trimin1|178405|e_gw1.169.6.1|Name=jgi.p|Trimin1|178405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=171bp
MTAHDADLQRYCELIIGAMRAHDTSAAVQQAGLRAMFGAASSCQGLLALG
AGEVFARALLSHAGHAGVLDEGILVLAAITRDRATHGPMGAAGACEALVQ
ALSERLSADVDAKVVAGGLWAIYHLAADDANRGRLSVAGAEELVLGIMQH
YLEDGFVQGAGQQAATRLIQ*
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mRNA from alignment at Contig_169:206524..207036-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17018 ID=mRNA_17018|Name=jgi.p|Trimin1|178405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=513bp|location=Sequence derived from alignment at Contig_169:206524..207036- (Tribonema minus UTEX_B_3156 )
ATGACGGCACATGATGCTGACTTACAGCGGTACTGCGAGCTCATCATTGG
TGCCATGCGCGCGCATGATACCAGTGCCGCGGTGCAGCAAGCGGGACTCC
GCGCAATGTTCGGCGCCGCCTCCAGCTGTCAGGGTCTCCTTGCGCTGGGG
GCCGGGGAGGTGTTCGCGAGGGCCCTGCTCTCTCACGCAGGGCATGCAGG
TGTGCTGGACGAGGGCATTCTGGTGCTGGCGGCGATCACCAGAGATCGAG
CAACGCACGGACCAATGGGCGCAGCTGGTGCATGCGAGGCTCTGGTGCAA
GCCCTCTCGGAACGCCTTAGCGCAGACGTCGATGCAAAGGTGGTGGCAGG
GGGCCTGTGGGCAATATACCACCTAGCAGCTGATGATGCAAACAGAGGTC
GATTGTCAGTTGCAGGTGCGGAAGAGCTGGTATTAGGCATTATGCAACAT
TATCTTGAAGATGGTTTTGTGCAGGGCGCTGGCCAGCAGGCTGCAACTCG
CCTGATTCAGTGA
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Coding sequence (CDS) from alignment at Contig_169:206524..207036-

>mRNA_17018 ID=mRNA_17018|Name=jgi.p|Trimin1|178405|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=513bp|location=Sequence derived from alignment at Contig_169:206524..207036- (Tribonema minus UTEX_B_3156 )
ATGACGGCACATGATGCTGACTTACAGCGGTACTGCGAGCTCATCATTGG
TGCCATGCGCGCGCATGATACCAGTGCCGCGGTGCAGCAAGCGGGACTCC
GCGCAATGTTCGGCGCCGCCTCCAGCTGTCAGGGTCTCCTTGCGCTGGGG
GCCGGGGAGGTGTTCGCGAGGGCCCTGCTCTCTCACGCAGGGCATGCAGG
TGTGCTGGACGAGGGCATTCTGGTGCTGGCGGCGATCACCAGAGATCGAG
CAACGCACGGACCAATGGGCGCAGCTGGTGCATGCGAGGCTCTGGTGCAA
GCCCTCTCGGAACGCCTTAGCGCAGACGTCGATGCAAAGGTGGTGGCAGG
GGGCCTGTGGGCAATATACCACCTAGCAGCTGATGATGCAAACAGAGGTC
GATTGTCAGTTGCAGGTGCGGAAGAGCTGGTATTAGGCATTATGCAACAT
TATCTTGAAGATGGTTTTGTGCAGGGCGCTGGCCAGCAGGCTGCAACTCG
CCTGATTCAGTGA
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