mRNA_17013 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132122
Unique NamemRNA_17013
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A836CIR1_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR1_9STRA)

HSP 1 Score: 226 bits (576), Expect = 8.730e-75
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1
Query:    1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRAL 360
            VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRAL
Sbjct:    1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRAL 120          
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A835YLM9_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLM9_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.160e-49
Identity = 86/126 (68.25%), Postives = 94/126 (74.60%), Query Frame = 1
Query:    1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAV-------LLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRA 357
            VLVVDDEGSIRKFL+RML QRGYRVV+ACDG+E LGAMKTC+FHAV       LLDLNMPRMGGLE L  LR WEREQ      R  QYVCV SANC+E V  Q Y +G D FL KPID+  LVR+
Sbjct:   88 VLVVDDEGSIRKFLERMLAQRGYRVVLACDGMEALGAMKTCSFHAVRTTFKQVLLDLNMPRMGGLEALVELRRWEREQPKS---RPLQYVCVISANCSEDVQAQAYSAGTDLFLPKPIDLPMLVRS 210          
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A835Z616_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z616_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.310e-32
Identity = 73/124 (58.87%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSA--------QYVCVTSANCAESVVTQVYESGADYFLAKPIDMATL 348
            VLVVDD+ ++R+FL RML  RGY VVVACDG EGL AMK CAF AVLLDLNMPR+ G+E LAALR WE++QXXXXXX           Q+V V SANC+E+   +   +GAD F +KPI + +L
Sbjct:  841 VLVVDDDATLRRFLARMLGTRGYDVVVACDGAEGLEAMKACAFAAVLLDLNMPRLSGIETLAALRAWEKQQXXXXXXXXXXXXXXXXPQFVVVISANCSEAQAAEALSAGADLFHSKPIHLPSL 964          
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A836C8G8_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.330e-27
Identity = 73/146 (50.00%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXX---------------------------RSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRA 357
            VLVVDDE SIRKFL  +L++ GY VV+A DG EGL AM + +FHAVLLDLNMPRMGG+  +AALREWEREQXXXXXX                           +  Q++ V SANC+E+        GAD F  KPI +  L  A
Sbjct:  594 VLVVDDEASIRKFLANLLKKNGYDVVLARDGEEGLQAMCSASFHAVLLDLNMPRMGGMAAMAALREWEREQXXXXXXXXXXXXXXXXXXXXXXXXPHQPGQREPQQPQFIIVVSANCSEAQQEAALAGGADLFHPKPIVVPALAAA 739          
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A835Z7I7_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.300e-26
Identity = 60/110 (54.55%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   19 EGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATL 348
            +  +RKFL+R+L +RGYRV+ A DG EGL AMK   + AVLLDLNMPR+GG+ VL  LR WE+ Q         Q+VCV SANCA+        SGAD FLAKPID+  L
Sbjct:  297 QHDLRKFLERILWRRGYRVLQAHDGYEGLAAMKRGIYLAVLLDLNMPRLGGMAVLDQLRRWEQLQPRERH----QFVCVLSANCADRHADDARRSGADMFLAKPIDVPAL 402          
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A835ZDP5_9STRA (Histidine kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.330e-19
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 1
Query:    1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHA 135
            VLVVDDEGSIRKFLDRML+QRGYRVV+AC+GVEGLGAMKTCAFHA
Sbjct:  742 VLVVDDEGSIRKFLDRMLDQRGYRVVLACNGVEGLGAMKTCAFHA 786          
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A835ZAK1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK1_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.610e-18
Identity = 57/132 (43.18%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   19 EGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHA----------------------VLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATL 348
            E +IRKFL R+LE+RGY VV A DGV+ L AM+ CAF A                      VLLD  MPRM G++ L  LR+ E         R+ QYV V SANC+ +   +   SGAD F AKPI++  L
Sbjct: 1904 ESTIRKFLARVLEKRGYGVVQAGDGVQALEAMRACAFTAHAPHSRRRLSTRKRNAPRCAPQVLLDNYMPRMNGIDTLLRLRQLEARDSA----RTRQYVIVVSANCSAAHEEEALGSGADLFHAKPINVPVL 2031          
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A525J5H2_9CAUL (Histidine kinase n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A525J5H2_9CAUL)

HSP 1 Score: 84.3 bits (207), Expect = 1.420e-16
Identity = 51/120 (42.50%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRAL 360
            VL+VDD    R+ ++ +LE  G   V A DG EG+ AMKT AF AVL+D+ MP M G E    +R+WER        R    + + SANC    V    E+GAD  + KPI  + LV AL
Sbjct:  634 VLIVDDNPVNRQVMELILESVGIGHVSAKDGREGVEAMKTGAFDAVLMDIQMPVMDGFEATRRIRDWERSTH-----RPRAPILMVSANCLPQHVADGREAGADAHINKPISASELVSAL 748          
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A537XRA8_9ACTN (Response regulator transcription factor (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537XRA8_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 8.680e-16
Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATL---VRAL 360
            VLVVDDE +IR+ + R L  RG+ V VA DG E LG+++T     ++LDLN+P +GGLEV   +R W           SA  + V S    E+      + GAD +L KP  +  L   VRAL
Sbjct:    6 VLVVDDERAIRRAVSRALASRGFLVDVAADGEEALGSVRTFDPDLMVLDLNLPELGGLEVCRRVRAW-----------SAVPILVLSVREEEADKVAALDLGADDYLTKPFGVDELMARVRAL 117          
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: UPI001AE03730 (response regulator n=1 Tax=Brevundimonas sp. AJA228-03 TaxID=2752515 RepID=UPI001AE03730)

HSP 1 Score: 76.6 bits (187), Expect = 1.460e-15
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVR 354
            +LVVDD+ +IR+ +  +L Q G++V+VA  G   L  +K   F  VLLD++MP+M GLEVLAA+++             A  V + +A+   + V +    G   ++AKP   ATLV 
Sbjct:    5 ILVVDDDDNIREVIHAVLTQAGFQVLVAASGEAALALLKRSRFELVLLDVHMPKMSGLEVLAAMKK----------IADATPVLMVTADSQTATVREALSLGCSGYIAKPFTPATLVE 112          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIR1_9STRA8.730e-75100.00CheY-like superfamily protein (Fragment) n=1 Tax=T... [more]
A0A835YLM9_9STRA1.160e-4968.25CheY-like superfamily protein n=1 Tax=Tribonema mi... [more]
A0A835Z616_9STRA3.310e-3258.87Response regulatory domain-containing protein n=1 ... [more]
A0A836C8G8_9STRA2.330e-2750.00Response regulatory domain-containing protein n=1 ... [more]
A0A835Z7I7_9STRA2.300e-2654.55Response regulatory domain-containing protein n=1 ... [more]
A0A835ZDP5_9STRA7.330e-1993.33Histidine kinase domain-containing protein n=1 Tax... [more]
A0A835ZAK1_9STRA3.610e-1843.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A525J5H2_9CAUL1.420e-1642.50Histidine kinase n=1 Tax=Phenylobacterium sp. TaxI... [more]
A0A537XRA8_9ACTN8.680e-1640.65Response regulator transcription factor (Fragment)... [more]
UPI001AE037301.460e-1536.44response regulator n=1 Tax=Brevundimonas sp. AJA22... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_169contigContig_169:154496..155426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132122|gw1.169.9.1
BRITEko00000,ko00001,ko00002,ko02022
KEGG ModuleM00500
KEGG Pathwayko02020,map02020
KEGG koko:K07714
DescriptionSigma-54 interaction domain
COG categoryT
Max annot lvl186801|Clostridia
EggNOG OGsCOG2204@1|root,COG2204@2|Bacteria,1VSKG@1239|Firmicutes,24ZP4@186801|Clostridia,3WD27@538999|Clostridiales incertae sedis
Evalue4.08e-15
Seed ortholog1120998.AUFC01000016_gene52
Hectar predicted targeting categoryother localisation
TranscriptId132444
TrackFilteredModels1
ProteinId132122
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132122gene_17013Tribonema minus UTEX_B_3156 geneContig_169 154496..155426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132122Trimin1|132122|gw1.169.9.1Tribonema minus UTEX_B_3156 polypeptideContig_169 154496..155426 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17013_2exon_17013_2Tribonema minus UTEX_B_3156 exonContig_169 154496..154720 -
exon_17013_1exon_17013_1Tribonema minus UTEX_B_3156 exonContig_169 155292..155426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17013CDS_17013Tribonema minus UTEX_B_3156 CDSContig_169 155292..155426 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17013 ID=mRNA_17013|Name=jgi.p|Trimin1|132122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_169:154496..155426- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCTGGTGGTGGACGACGAGGGGTCAATTCGCAAGTTCCTGGACCGGAT
GCTGGAGCAGCGCGGGTACCGCGTGGTGGTGGCGTGCGACGGCGTGGAGG
GGCTCGGTGCCATGAAGACGTGCGCCTTTCACGCGGTGCTTCTCGATCTC
AACATGCCGCGCATGGGCGGCCTCGAGGTTCTGGCGGCACTGCGGGAGTG
GGAGCGCGAGCAGCAGCAGCAGCAGCAGCAGCGCTCAGCGCAGTACGTGT
GCGTCACCTCCGCCAACTGCGCCGAGTCCGTGGTGACGCAGGTCTACGAG
AGCGGCGCGGATTATTTCCTGGCCAAGCCCATCGACATGGCCACATTGGT
ACGCGCCCTG
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protein sequence of jgi.p|Trimin1|132122

>Trimin1|132122|gw1.169.9.1 ID=Trimin1|132122|gw1.169.9.1|Name=jgi.p|Trimin1|132122|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp
VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDL
NMPRMGGLEVLAALREWEREQQQQQQQRSAQYVCVTSANCAESVVTQVYE
SGADYFLAKPIDMATLVRAL
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mRNA from alignment at Contig_169:154496..155426-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17013 ID=mRNA_17013|Name=jgi.p|Trimin1|132122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=931bp|location=Sequence derived from alignment at Contig_169:154496..155426- (Tribonema minus UTEX_B_3156 )
GTGCTGGTGGTGGACGACGAGGGGTCAATTCGCAAGTTCCTGGACCGGAT GCTGGAGCAGCGCGGGTACCGCGTGGTGGTGGCGTGCGACGGCGTGGAGG GGCTCGGTGCCATGAAGACGTGCGCCTTTCACGCGGTACGTATGTACTGG TCACATTGTGTAAATGCATACGATGCATACATACGTAGCTACCTTATACG CGTACCTGCAATTACGGTGGCGTGCGACGGCGTGGAGGGGCTCGGTGCCA TGAAGACGTGCAAGTTCCACGCGGTATGTATGTATGTATGCACTTGTCAT CTTGTGTACATGCGTGTATACCTGCATACCTGCACTTCTTTGGGCGTGCG CGGCCGTGGCGTGGAGGGGCTTGACACGTGCGCGTTCCACGCGGTGCGCA CATATGATGGTCATCTTGTACAAGCACATGCATACATACATAGCACAGTA CGAGGTAGTGTACGAAAAATGCACGCAGTGAGGCAATGGCACAGCTCAGC CAGGGCAGGCGGCAGCAGCGGCAGCAGCGCTTCGAGGCAGGCATTCTGAG AATGAGACCTACTGACGCGATGGCACAGCTCAGCCAGTGCAGCAGCAGCA GCAGTTGCCAAACTGAAGAGGCATTCTGGACACCGCAAGTCTGCCGTGCT GCATGGTGTGCTTCAACAACGCGGCGCTGGCTCCCTCATCCCCCTTGTGC CTCCAGGTGCTTCTCGATCTCAACATGCCGCGCATGGGCGGCCTCGAGGT TCTGGCGGCACTGCGGGAGTGGGAGCGCGAGCAGCAGCAGCAGCAGCAGC AGCGCTCAGCGCAGTACGTGTGCGTCACCTCCGCCAACTGCGCCGAGTCC GTGGTGACGCAGGTCTACGAGAGCGGCGCGGATTATTTCCTGGCCAAGCC CATCGACATGGCCACATTGGTACGCGCCCTG
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Coding sequence (CDS) from alignment at Contig_169:154496..155426-

>mRNA_17013 ID=mRNA_17013|Name=jgi.p|Trimin1|132122|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=360bp|location=Sequence derived from alignment at Contig_169:154496..155426- (Tribonema minus UTEX_B_3156 )
GTGCTGGTGGTGGACGACGAGGGGTCAATTCGCAAGTTCCTGGACCGGAT
GCTGGAGCAGCGCGGGTACCGCGTGGTGGTGGCGTGCGACGGCGTGGAGG
GGCTCGGTGCCATGAAGACGTGCGCCTTTCACGCGGTGCTTCTCGATCTC
AACATGCCGCGCATGGGCGGCCTCGAGGTTCTGGCGGCACTGCGGGAGTG
GGAGCGCGAGCAGCAGCAGCAGCAGCAGCAGCGCTCAGCGCAGTACGTGT
GCGTCACCTCCGCCAACTGCGCCGAGTCCGTGGTGACGCAGGTCTACGAG
AGCGGCGCGGATTATTTCCTGGCCAAGCCCATCGACATGGCCACATTGGT
ACGCGCCCTG
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