mRNA_17013 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A836CIR1_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR1_9STRA) HSP 1 Score: 226 bits (576), Expect = 8.730e-75 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 Query: 1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRAL 360 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRAL Sbjct: 1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRAL 120
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A835YLM9_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLM9_9STRA) HSP 1 Score: 166 bits (420), Expect = 1.160e-49 Identity = 86/126 (68.25%), Postives = 94/126 (74.60%), Query Frame = 1 Query: 1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAV-------LLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRA 357 VLVVDDEGSIRKFL+RML QRGYRVV+ACDG+E LGAMKTC+FHAV LLDLNMPRMGGLE L LR WEREQ R QYVCV SANC+E V Q Y +G D FL KPID+ LVR+ Sbjct: 88 VLVVDDEGSIRKFLERMLAQRGYRVVLACDGMEALGAMKTCSFHAVRTTFKQVLLDLNMPRMGGLEALVELRRWEREQPKS---RPLQYVCVISANCSEDVQAQAYSAGTDLFLPKPIDLPMLVRS 210
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A835Z616_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z616_9STRA) HSP 1 Score: 129 bits (323), Expect = 3.310e-32 Identity = 73/124 (58.87%), Postives = 89/124 (71.77%), Query Frame = 1 Query: 1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSA--------QYVCVTSANCAESVVTQVYESGADYFLAKPIDMATL 348 VLVVDD+ ++R+FL RML RGY VVVACDG EGL AMK CAF AVLLDLNMPR+ G+E LAALR WE++QXXXXXX Q+V V SANC+E+ + +GAD F +KPI + +L Sbjct: 841 VLVVDDDATLRRFLARMLGTRGYDVVVACDGAEGLEAMKACAFAAVLLDLNMPRLSGIETLAALRAWEKQQXXXXXXXXXXXXXXXXPQFVVVISANCSEAQAAEALSAGADLFHSKPIHLPSL 964
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A836C8G8_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G8_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.330e-27 Identity = 73/146 (50.00%), Postives = 87/146 (59.59%), Query Frame = 1 Query: 1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXX---------------------------RSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRA 357 VLVVDDE SIRKFL +L++ GY VV+A DG EGL AM + +FHAVLLDLNMPRMGG+ +AALREWEREQXXXXXX + Q++ V SANC+E+ GAD F KPI + L A Sbjct: 594 VLVVDDEASIRKFLANLLKKNGYDVVLARDGEEGLQAMCSASFHAVLLDLNMPRMGGMAAMAALREWEREQXXXXXXXXXXXXXXXXXXXXXXXXPHQPGQREPQQPQFIIVVSANCSEAQQEAALAGGADLFHPKPIVVPALAAA 739
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A835Z7I7_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I7_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.300e-26 Identity = 60/110 (54.55%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 19 EGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATL 348 + +RKFL+R+L +RGYRV+ A DG EGL AMK + AVLLDLNMPR+GG+ VL LR WE+ Q Q+VCV SANCA+ SGAD FLAKPID+ L Sbjct: 297 QHDLRKFLERILWRRGYRVLQAHDGYEGLAAMKRGIYLAVLLDLNMPRLGGMAVLDQLRRWEQLQPRERH----QFVCVLSANCADRHADDARRSGADMFLAKPIDVPAL 402
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A835ZDP5_9STRA (Histidine kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP5_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 7.330e-19 Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 1 Query: 1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHA 135 VLVVDDEGSIRKFLDRML+QRGYRVV+AC+GVEGLGAMKTCAFHA Sbjct: 742 VLVVDDEGSIRKFLDRMLDQRGYRVVLACNGVEGLGAMKTCAFHA 786
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A835ZAK1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK1_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.610e-18 Identity = 57/132 (43.18%), Postives = 71/132 (53.79%), Query Frame = 1 Query: 19 EGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHA----------------------VLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATL 348 E +IRKFL R+LE+RGY VV A DGV+ L AM+ CAF A VLLD MPRM G++ L LR+ E R+ QYV V SANC+ + + SGAD F AKPI++ L Sbjct: 1904 ESTIRKFLARVLEKRGYGVVQAGDGVQALEAMRACAFTAHAPHSRRRLSTRKRNAPRCAPQVLLDNYMPRMNGIDTLLRLRQLEARDSA----RTRQYVIVVSANCSAAHEEEALGSGADLFHAKPINVPVL 2031
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A525J5H2_9CAUL (Histidine kinase n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A525J5H2_9CAUL) HSP 1 Score: 84.3 bits (207), Expect = 1.420e-16 Identity = 51/120 (42.50%), Postives = 66/120 (55.00%), Query Frame = 1 Query: 1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVRAL 360 VL+VDD R+ ++ +LE G V A DG EG+ AMKT AF AVL+D+ MP M G E +R+WER R + + SANC V E+GAD + KPI + LV AL Sbjct: 634 VLIVDDNPVNRQVMELILESVGIGHVSAKDGREGVEAMKTGAFDAVLMDIQMPVMDGFEATRRIRDWERSTH-----RPRAPILMVSANCLPQHVADGREAGADAHINKPISASELVSAL 748
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: A0A537XRA8_9ACTN (Response regulator transcription factor (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537XRA8_9ACTN) HSP 1 Score: 77.0 bits (188), Expect = 8.680e-16 Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATL---VRAL 360 VLVVDDE +IR+ + R L RG+ V VA DG E LG+++T ++LDLN+P +GGLEV +R W SA + V S E+ + GAD +L KP + L VRAL Sbjct: 6 VLVVDDERAIRRAVSRALASRGFLVDVAADGEEALGSVRTFDPDLMVLDLNLPELGGLEVCRRVRAW-----------SAVPILVLSVREEEADKVAALDLGADDYLTKPFGVDELMARVRAL 117
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Match: UPI001AE03730 (response regulator n=1 Tax=Brevundimonas sp. AJA228-03 TaxID=2752515 RepID=UPI001AE03730) HSP 1 Score: 76.6 bits (187), Expect = 1.460e-15 Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 1 Query: 1 VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLNMPRMGGLEVLAALREWEREQXXXXXXRSAQYVCVTSANCAESVVTQVYESGADYFLAKPIDMATLVR 354 +LVVDD+ +IR+ + +L Q G++V+VA G L +K F VLLD++MP+M GLEVLAA+++ A V + +A+ + V + G ++AKP ATLV Sbjct: 5 ILVVDDDDNIREVIHAVLTQAGFQVLVAASGEAALALLKRSRFELVLLDVHMPKMSGLEVLAAMKK----------IADATPVLMVTADSQTATVREALSLGCSGYIAKPFTPATLVE 112 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132122 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17013 ID=mRNA_17013|Name=jgi.p|Trimin1|132122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_169:154496..155426- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGCTGGTGGTGGACGACGAGGGGTCAATTCGCAAGTTCCTGGACCGGATback to top protein sequence of jgi.p|Trimin1|132122 >Trimin1|132122|gw1.169.9.1 ID=Trimin1|132122|gw1.169.9.1|Name=jgi.p|Trimin1|132122|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp VLVVDDEGSIRKFLDRMLEQRGYRVVVACDGVEGLGAMKTCAFHAVLLDLback to top mRNA from alignment at Contig_169:154496..155426- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17013 ID=mRNA_17013|Name=jgi.p|Trimin1|132122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=931bp|location=Sequence derived from alignment at Contig_169:154496..155426- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_169:154496..155426- >mRNA_17013 ID=mRNA_17013|Name=jgi.p|Trimin1|132122|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=360bp|location=Sequence derived from alignment at Contig_169:154496..155426- (Tribonema minus UTEX_B_3156 )back to top |