mRNA_17009 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178390
Unique NamemRNA_17009
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A835Z6E3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E3_9STRA)

HSP 1 Score: 576 bits (1484), Expect = 1.740e-207
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 1
Query:    1 MPQNFLRWRGTHAPDNPNLTEKFQCTTSTLPCAAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMAGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGGDSGNAPPGT 879
            MPQNFLRWRGTHAPDNPNLTEKFQCTTSTLPCAAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMAGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGGDSGNAPPGT
Sbjct:    1 MPQNFLRWRGTHAPDNPNLTEKFQCTTSTLPCAAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMAGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGGDSGNAPPGT 293          
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 3.470e-81
Identity = 134/238 (56.30%), Postives = 178/238 (74.79%), Query Frame = 1
Query:   97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMAGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASG 810
            A+K+EG E+Q++T EL+ GQ +RAEAGNL++M +G+ MDT+TGGG      RVITGQ++ VTD+     +R  +SG      +V LGT +P+KI+RLPLA +GG V+CQRGAFLAGS TIDI TE T+ MAG FGGEGFVLQRL+G+GDAFV A G +++R+L  GE LRV++GS+V FS++V Y V T  G KN+VFG +G+F+  L GPGTV+LQG+PFDR+V  I + +P    G
Sbjct:    2 ASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYV----NRGDASG------KVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELSEGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLAGPGTVFLQGLPFDRMVDQIARRIPGGRGG 229          
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A7S2GIV3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIV3_9STRA)

HSP 1 Score: 241 bits (615), Expect = 3.870e-75
Identity = 132/253 (52.17%), Postives = 177/253 (69.96%), Query Frame = 1
Query:   97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMA-GLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGG 852
            A ++EG + Q++ VEL  GQ LRAE+GNLIYMTEGV M+T   GGV    +R+++G ++ +++F        T SG     G V LGT +P+KILR+ L ++GG ++CQ+GAFLAGSD I+I    T+    G FGGEGFVLQ+LSGEGDA+V A G ++ + L+ GE LRVTAGSLV F +++DY V    G+KN+VFG +G+F+ TLTGPGTVYLQGM FDR+V  I + +P+   GMP   I + GMGGG
Sbjct:   72 AGRVEGGDAQIVHVELLPGQTLRAESGNLIYMTEGVEMETVALGGVSSGFARLLSGGTMFLSNF------EYTGSGS----GTVALGTDVPSKILRMHLPNYGGEIICQKGAFLAGSDDINIEMAFTKSFTTGFFGGEGFVLQKLSGEGDAYVKATGALVTKQLEEGETLRVTAGSLVAFEASIDYDVQMMKGMKNVVFGGEGLFITTLTGPGTVYLQGMQFDRMVDQIARRIPRGG-GMP---IFMGGMGGG 310          
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A1W0A5V3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5V3_9STRA)

HSP 1 Score: 245 bits (626), Expect = 4.230e-75
Identity = 130/257 (50.58%), Postives = 181/257 (70.43%), Query Frame = 1
Query:   97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPM-AGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIP-GMGGGDSG 861
            AA+IEG ETQ++ +++   Q+LR+E+G +IYMT+G+ MDT T GG+ + L+R++TGQ+  VT++        T  G D+  G V +GTS+P+KIL +PL  +GGS++CQ+GAFL GS TI I  E T+   AG FGGEGFVLQRL+G GDAF+SA G ++ R LK GEV R+++G LV F  +V + +T+  G+KN++F   G+F+ TLTGPG VYLQG+PFDR+V  I   +P    G P   II+P G+GGG SG
Sbjct:  107 AARIEGTETQIVHIDIGPNQKLRSESGAMIYMTDGIEMDTHTAGGISQGLTRMMTGQNFFVTEY--------TYKGTDT--GTVAMGTSVPSKILHMPLEKYGGSLICQKGAFLCGSHTISIEMEFTKNFGAGFFGGEGFVLQRLNGPGDAFISANGALIERTLKEGEVFRISSGCLVAFEPSVHFDITSVSGVKNVLFSGTGLFVTTLTGPGRVYLQGLPFDRMVGEIASRIPGGRGGSP---IIMPMGLGGGSSG 350          
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA)

HSP 1 Score: 240 bits (612), Expect = 1.130e-74
Identity = 128/257 (49.81%), Postives = 178/257 (69.26%), Query Frame = 1
Query:   97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMA-GLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNAS-GMPVPPIIIPGMGGGDSG 861
            A++IEG+++Q++TV L+ GQ LRAE+G ++YMT+GV M+TSTGGGVG    R +TGQ+V ++D+        T  G   R G V LGT  P+KI+RL L ++ G +VCQ+GA L  S T+DI TE T+  + G FGGEGFVLQ L GEGD FV A G +++++L  GE LR+++GSLV FS TV+Y +    G KN++FG +G+F+ TLTGPGT++LQGMP  R++  I + +P     G+ +P   IPGMG G SG
Sbjct:   54 ASRIEGSDSQIVTVRLEPGQVLRAESGGMMYMTDGVEMNTSTGGGVGAGFKRFLTGQNVFISDY--------TYKG--DRFGIVALGTDFPSKIMRLSLPEWDGKIVCQKGALLCASHTVDIETEFTKKFSTGFFGGEGFVLQALLGEGDVFVKAGGSIIKKELNPGEQLRISSGSLVAFSQTVEYDIQMMPGFKNVLFGGEGLFVTTLTGPGTIWLQGMPPQRMISEIARRVPSGGGLGLAIP---IPGMGSGGSG 297          
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A7S3PYP5_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYP5_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.020e-72
Identity = 126/253 (49.80%), Postives = 177/253 (69.96%), Query Frame = 1
Query:  100 AKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMA-GLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNAS-GMPVPPIIIPGMGGG 852
            +KIEGNE+Q++TV L+ GQ LRAE+G ++YMT+GV M+T+TGGG+     R++TGQ+V ++D+        + +G D+  G VCLGTS PAKILRL + ++GG +VCQ+GA L  S T+DI  E T+  + G FGGEGFVLQ L+GEGD FV+A G +++R+L+ GE LR+++G LV F+  VDY V    G KN++FG +G+F+ TL GPG V+LQG P  R++  I + +P     G+ VP   I GMGGG
Sbjct:   78 SKIEGNESQIVTVALEPGQVLRAESGAMMYMTDGVEMNTTTGGGMSAGFQRMLTGQNVFISDY--------SYNGPDNTKGMVCLGTSFPAKILRLNVDEYGGKIVCQKGALLCASHTVDIQMEFTKKFSTGFFGGEGFVLQALTGEGDVFVTAGGTLIKRELEEGEELRISSGCLVGFTEGVDYDVEMIKGYKNVLFGGEGLFITTLKGPGLVWLQGQPPQRMISEIARRVPSGGGLGLAVP---IGGMGGG 319          
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A7S4QQY9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQY9_9STRA)

HSP 1 Score: 234 bits (598), Expect = 6.620e-72
Identity = 123/252 (48.81%), Postives = 173/252 (68.65%), Query Frame = 1
Query:   97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPM-AGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGG 849
            A+KIEG E+Q++TV ++ GQ LRAE+G L+YMT+G+ M+T++GGG+     R++TGQ+V ++D+        T +G     G V LGT  P+KI+RL    +GG +VCQ+GA L  S TIDI  E  +   AG FGGEGFVLQ L+G+GD FV A G ++R++L++GE LR+++G LVCFS  VD+ V    G KN++FG +G+F+ TLTGPGTV+LQG P  R++  I + +P    G+ VP   IPGMGG
Sbjct:  111 ASKIEGKESQIVTVAIEPGQVLRAESGALMYMTDGIEMNTTSGGGMSAGFKRLLTGQNVFISDY--------TYTGESGTRGLVALGTDFPSKIIRLNPNQYGGKIVCQKGALLCASHTIDIEMEFAKKFTAGFFGGEGFVLQALTGDGDVFVKAGGTMIRKELEAGEQLRISSGCLVCFSQGVDFDVQMMPGFKNVLFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSGGIGLAVP---IPGMGG 351          
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A7S2FBI8_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBI8_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.710e-71
Identity = 129/253 (50.99%), Postives = 180/253 (71.15%), Query Frame = 1
Query:   97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPM-AGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGG 852
            AAKIEG ++Q++TV++  GQ LRAE+GNLIYM++GV M+TS  GG+    +R + G SV +++F      R T    +   G V LGT MP+KI+++ + D+ G ++CQ+GAFLAGSDT++I    ++   AG FGGEGFVLQ+LSGEGDAFV A G ++ ++LK+GE LRVT+GS+V F  +V+Y V    G+KN+VFG +G+F+ TLTGPG VYLQGM FDR+V  I + +P +  G+ +P   I GMGGG
Sbjct:   70 AAKIEGGDSQIVTVDILPGQALRAESGNLIYMSDGVEMETSATGGMSAGFARYMAGGSVFLSNF------RYTG---EVGKGSVALGTDMPSKIMKMTVKDYEGGLMCQKGAFLAGSDTVNIEMGFSKSFTAGFFGGEGFVLQKLSGEGDAFVKATGALISKELKAGEKLRVTSGSIVAFEGSVEYDVQMMTGMKNVVFGGEGLFITTLTGPGRVYLQGMQFDRMVSEIARRIP-SGGGIFMP---IGGMGGG 309          
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A4D9D418_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D418_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.020e-70
Identity = 119/239 (49.79%), Postives = 169/239 (70.71%), Query Frame = 1
Query:   97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPM-AGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASG 810
            A+++EG ETQ++ V+L+ GQ LRAE G+L+YMT+GV ++TS GGG+   L R +TG+++ ++DF           G +   G V LGT  P+KI+R+ LAD+GGS++CQ+GAFL G+    +  E TR   +G FGGEGFVLQRL+G GDAF+ A G ++RR+L  GE LRVT+GSLV F+ +V Y V    G+KN++FG +G+F+ TLTGPG+V+LQ MPFDR+V +I   +P+   G
Sbjct:   31 ASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYH--------GPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKSGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGSVFLQSMPFDRVVASIASRVPRGGLG 261          
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: B7GD59_PHATC (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GD59_PHATC)

HSP 1 Score: 226 bits (575), Expect = 2.710e-70
Identity = 116/232 (50.00%), Postives = 160/232 (68.97%), Query Frame = 1
Query:  103 KIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMA-GLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALP 795
            K+EGNE+Q+LTV L+ GQ LRAE+G ++YMT+GV M+T++GGG+     R++TGQ+  ++D+  E        G    VG V LGT  P+KI+RL L ++GG +VCQ+GA L  S T+DI  E ++ M+ G FGGEGFVLQ LSGEGD FV A G ++RRDLK GE LR+++G LV F++ VDY V    G  N+  G +G+F+ TLTGPG V+LQG P  R++  I + +P
Sbjct:    1 KVEGNESQILTVALEPGQVLRAESGAMMYMTDGVQMNTTSGGGLSSGFQRMLTGQNFFISDYSFE--------GEPGTVGHVALGTDFPSKIVRLNLEEYGGKIVCQKGALLCASHTVDIQMEYSKNMSTGFFGGEGFVLQGLSGEGDVFVKAGGTLIRRDLKEGEQLRISSGCLVAFTNGVDYDVQMVKGFANVFAGGEGLFMTTLTGPGVVWLQGQPAQRMISEIARRVP 224          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6E3_9STRA1.740e-207100.00Altered inheritance of mitochondria protein 24, mi... [more]
D7G1U0_ECTSI3.470e-8156.30Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2GIV3_9STRA3.870e-7552.17Altered inheritance of mitochondria protein 24, mi... [more]
A0A1W0A5V3_9STRA4.230e-7550.58Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2WLF3_9STRA1.130e-7449.81Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S3PYP5_9STRA1.020e-7249.80Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S4QQY9_9STRA6.620e-7248.81Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2FBI8_9STRA1.710e-7150.99Altered inheritance of mitochondria protein 24, mi... [more]
A0A4D9D418_9STRA1.020e-7049.79Altered inheritance of mitochondria protein 24, mi... [more]
B7GD59_PHATC2.710e-7050.00Altered inheritance of mitochondria protein 24, mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_169contigContig_169:128184..131759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178390|e_gw1.169.56.1
DescriptionMitochondrial biogenesis AIM24
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2013@1|root,2QVFQ@2759|Eukaryota
Evalue5.7e-82
Seed ortholog2880.D7G1U0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTryptophan RNA-binding attenuator protein-like domain
Ec32 orthologEc-07_004160.1
TranscriptId178712
TrackFilteredModels1
ProteinId178390
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178390gene_17009Tribonema minus UTEX_B_3156 geneContig_169 128184..131759 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17009_1exon_17009_1Tribonema minus UTEX_B_3156 exonContig_169 128184..128458 +
exon_17009_2exon_17009_2Tribonema minus UTEX_B_3156 exonContig_169 129817..130063 +
exon_17009_3exon_17009_3Tribonema minus UTEX_B_3156 exonContig_169 130762..130986 +
exon_17009_4exon_17009_4Tribonema minus UTEX_B_3156 exonContig_169 131625..131759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17009CDS_17009Tribonema minus UTEX_B_3156 CDSContig_169 128184..128458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178390Trimin1|178390|e_gw1.169.56.1Tribonema minus UTEX_B_3156 polypeptideContig_169 128184..131759 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17009 ID=mRNA_17009|Name=jgi.p|Trimin1|178390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=882bp|location=Sequence derived from alignment at Contig_169:128184..131759+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCAAAACTTTTTGCGTTGGCGGGGTACCCACGCACCTGACAATCC
AAACCTCACCGAAAAATTTCAGTGTACCACTTCCACGCTCCCCTGCGCAG
CCAAGATCGAGGGCAACGAGACACAGGTGCTGACGGTGGAGCTGCAACGC
GGTCAGAGGCTGCGCGCAGAGGCGGGGAACCTCATATACATGACGGAGGG
CGTGGTGATGGACACCAGCACTGGGGGCGGGGTGGGCAAGGCGCTGTCAA
GAGTCATCACTGGCCAGAGCGTCATGGTCACAGACTTCTTCCTGGAGCCG
ACATCGCGCCGCACGTCATCGGGTCACGACTCGCGTGTCGGTCAAGTGTG
CCTCGGCACAAGCATGCCCGCTAAGATCCTGAGGCTGCCGCTGGCGGACT
TCGGGGGGTCGGTCGTCTGCCAGCGCGGCGCGTTTCTGGCTGGCTCAGAC
ACCATCGATATCAGTACGGAGGTAACGCGGCCGATGGCGGGGCTTTTTGG
GGGCGAAGGCTTTGTGCTGCAGCGGCTCAGCGGCGAGGGCGACGCCTTTG
TGAGCGCGTGCGGCCACGTCATGCGGCGCGACCTCAAGAGTGGCGAAGTG
CTGCGCGTAACGGCCGGATCGCTGGTGTGCTTCTCTTCAACTGTCGACTA
TGGGGTCACAACGGCTGGCGGCTTGAAGAACATCGTGTTCGGCACGGACG
GAGTTTTCTTGGCCACACTTACGGGCCCGGGGACGGTGTACCTTCAGGGC
ATGCCCTTTGACAGGCTGGTTCGAGCGATAGGCAAGGCGCTGCCGCAGAA
CGCTAGTGGCATGCCTGTGCCTCCCATCATAATACCAGGCATGGGCGGAG
GGGACAGCGGGAATGCGCCACCGGGTACGTAG
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protein sequence of jgi.p|Trimin1|178390

>Trimin1|178390|e_gw1.169.56.1 ID=Trimin1|178390|e_gw1.169.56.1|Name=jgi.p|Trimin1|178390|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp
MPQNFLRWRGTHAPDNPNLTEKFQCTTSTLPCAAKIEGNETQVLTVELQR
GQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEP
TSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSD
TIDISTEVTRPMAGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEV
LRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQG
MPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGGDSGNAPPGT*
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mRNA from alignment at Contig_169:128184..131759+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17009 ID=mRNA_17009|Name=jgi.p|Trimin1|178390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3576bp|location=Sequence derived from alignment at Contig_169:128184..131759+ (Tribonema minus UTEX_B_3156 )
ATGCCTCAAAACTTTTTGCGTTGGCGGGGTACCCACGCACCTGACAATCC AAACCTCACCGAAAAATTTCAGTGTACCACTTCCACGCTCCCCTGCGCAG CCAAGATCGAGGGCAACGAGACACAGGTGCTGACGGTGGAGCTGCAACGC GGTCAGAGGCTGCGCGCAGAGGCGGGGAACCTCATATACATGACGGAGGG CGTGGTGATGGACACCAGCACTGGGGGCGGGGTGGGCAAGGCGCTGTCAA GAGTCATCACTGGCCAGAGCGTCATGTAGGTCGTCTATCATACAATCCAT GTTCTGGTGTGGCATGTCATTGCGATTGGTTATGAGAGCGTGGTGAGGGT TAGGGTTAGGGTGGGGTAAGACCAGGGTCATGGACCTGGACACCAGCACG GGGGGCGGGGTGGGCAAGGCGCTGTCAAGAGTAATCACTGGCCAGAGTGT CATGTATGTTTTCTGACCAATGATAGGTGCTCCAGTAGACAATGTGATTG GAGATGAGGCTAGGGTTGGGAGTAGGATTGGGATTGTGATGGACACCAGC ACGGGGGGCGGGGCGGGCAGGGCGCTGTCCAGAGTCATCACTGGCCAGAG CGTCATATGAGATTCAAATGACCGATGCTCTGTGGTATGTCAATGCGAGT GGGCATACGAGTGTGGTCAATTTAGGGTTCGGGGTGGGGTAAAGCTGGTG CTATGATGGACCTGGACATCAGCTCGGGGGGCGGGGGGGGCAAGGCGCTG TCAATAGTCATCACTGGCCAGAGAGTCATGTAGGTTTCCTAGTACACGAT TTATGCTTTGGTATGATTTATGTAATTGGATATGAGGGCTAGGATTTAGG TTGTGATTCTCAAGGTGATGGACATCAGCACGGGCGGCGGGGTGGGCAAG ACGCTGTCAAGAGTCATCACCGGCCAGAGTGTCATGTAGGTTTTATAACA GTTAAAAAAAGAGAGAAAAAAATCTTCTGTTTTGTAGAATTTTGCCTCCG GTATGATGATGTAATTGGACATGAGGGGCTAGGGTTTAGGGTTGTGGTGG GCATAGCGGGTGGACAAGGCACCGTCAAAAGTTGTCACTGGCCAGAACGT CATGTGATATTCAATTACCACCGCTCTCGTATGATGGTGCAATTGAGATT GAGCGTGCTCAGCGTCAGGGCTGGGGTAGGGTTAGCGTTATTTATGATGG ACTCATGTGGGGCTCTGGTATGATTATGCGTTTGGGTACGCGGCATGCAC GGGGTCAGGGCTGGGACAGGGTTATAATGAACACCAGCAGGGAGCAGAGG TGGGGAGGCATTGTCAGGCCCTATGCCACCTACCCTGTGCGCCATGCGCA CCCATGCACCGGCTACCTACTCTATGCACCCTGCGCTCAACACCTATCTG ATGCATCCTAGCCACTGGTGTATCCTAGCCACCTACATACTCAGTTCATG TGCCGGCTACATACCCTATGCGCTGCAGTGGCTACGTACCCTCATGCGCC GCGTGCTCGCTACCTACCTGCCCTACGCACCCCCCATGCACTGGCTACCT ACCCTATGCGCCGCAGTGGCTACCTACCTACCCTCATGCGCCGCTATGTA CCTACCTACCCTACGCGCACCCCCCTCCCTCAGGGTCACAGACTTCTTCC TGGAGCCGACATCGCGCCGCACGTCATCGGGTCACGACTCGCGTGTCGGT CAAGTGTGCCTCGGCACAAGCATGCCCGCTAAGATCCTGAGGCTGCCGCT GGCGGACTTCGGGGGGTCGGTCGTCTGCCAGCGCGGCGCGTTTCTGGCTG GCTCAGACACCATCGATATCAGTACGGAGGTAACGCGGCCGATGGCGGGG CTTTTTGGGGGCGAAGGCTTTGTGCTGCAGGTGAGCGCGGTGTTCATCCG TGAGTGCGCGCGAAAGCAGCGTTGGTGATGCCTGTGTTGTAGCGTTGCTG CGGAATTGGCTGGCGTGTCGACTCTGATAGTGTGGACATGAGCTTGCGGC GGGCCCGTAAGCAACTGCTGCGGTGACGCTCCGCTTGCCGTGTAGGTAGG TAGGTATGAGGCCAGCACTCACACAATGATGGTGCCATTGCACTGCTGGA ATACATGCAACATCAGTGCTGCTGCGCACCGCTTGGCGCAGAGGGCGGCA TCTTCGACAACGCGTGCGGCCCACATCAGTAGGCTCATGTGAACCTCACA GTTTTGCAACTTCAAGTATCCACTGAGCGGGAGGGTGGCACATCTACAAT TGTTCATGGTGCTGGCATTGATGCGTGCATTCCCATACCCAATACATACC CTGGCACCGCGCAGCGGCTCAGCGGCGAGGGCGACGCGTTTGTGAGCGCG TGCGGCCACATCATCTAGGAGCCCATACATACATTCGCGTGCAGGATACA TACCCTGGCACCGCGCAACGGCTCACCAGCGGCGATGCGGTTGTGAGCAC GTGCGGCCACGTCATCGAAGAGCCCAGATGTACATGCATACCTACATACA TGCATACTTCAAACATACATACATACTTTTAAAACTACATACACACACAT ATACGATACATACCCTGGCGCTGCGCAGCGGCTCAGCGGCGAGGGCGACG CCTTTGTGAGCGCGTGCGGCCACGTCATGCGGCGCGACCTCAAGAGTGGC GAAGTGCTGCGCGTAACGGCCGGATCGCTGGTGTGCTTCTCTTCAACTGT CGACTATGGGGTCACAACGGCTGGCGGCTTGAAGAACATCGTGTTCGGCA CGGACGGAGTTTTCTTGGCCACACTTACGGGCCCGGGGACGGTGTACCTT CAGGTATGTAGGTATTAAATACTGCGACTTTCGCGCAAGCCTACCCTTGC CACTAGAGACCGCCGCTAACGGGCCCGGCACGGTGTATGTATATTATGTG CATCTGCAGGTTTGTTGGTTTTTGACTCTGTTCTCCCGCGCAAGCCTGAA CTCAATCCTAGCAACAGCCGATGGCAGCGAGGGAAAGCGTGCTTTGAGGG ACGCGGAACCTTCATGCTCTGGCAAAAATCTGCTGGCTAGGATTAGCCTG TAAGGCTAGCGCCACTTGCCGCAGCAAGCAGTCCCGCTGTGTAGGGGCTC TGGGGGCTAGCCATGTCCATGCAGTGGTAGGGTACCGGAGGCGACTGCGT GGATCACTGGAGTGCATGTTTTGTACTCCTGTAAGAAGACGCCTCCCAGA TTTTATTTGGCTGCATCGTGAATGTGTATACTGTCACGTACCTCACAAAA CCTCAGCGGCGCAGTGGTCACAGTGGTTAACCACCATGTCCATGTGCTCG GCCTGCACGACCGTTGTCAATGCTATGATACCATGTTGCTCGGCAGAATA GTGAACAAAATCACTACTCCCTTTCAAGACAAAGCTTCACCCAGTGCTCA GCAGCTAACCATTGCTGCACTCTTTTGTTGATGGATCACAGGGCATGCCC TTTGACAGGCTGGTTCGAGCGATAGGCAAGGCGCTGCCGCAGAACGCTAG TGGCATGCCTGTGCCTCCCATCATAATACCAGGCATGGGCGGAGGGGACA GCGGGAATGCGCCACCGGGTACGTAG
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Coding sequence (CDS) from alignment at Contig_169:128184..131759+

>mRNA_17009 ID=mRNA_17009|Name=jgi.p|Trimin1|178390|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_169:128184..131759+ (Tribonema minus UTEX_B_3156 )
ATGCCTCAAAACTTTTTGCGTTGGCGGGGTACCCACGCACCTGACAATCC
AAACCTCACCGAAAAATTTCAGTGTACCACTTCCACGCTCCCCTGCGCAG
CCAAGATCGAGGGCAACGAGACACAGGTGCTGACGGTGGAGCTGCAACGC
GGTCAGAGGCTGCGCGCAGAGGCGGGGAACCTCATATACATGACGGAGGG
CGTGGTGATGGACACCAGCACTGGGGGCGGGGTGGGCAAGGCGCTGTCAA
GAGTCATCACTGGCCAGAGCGTCATGGTCACAGACTTCTTCCTGGAGCCG
ACATCGCGCCGCACGTCATCGGGTCACGACTCGCGTGTCGGTCAAGTGTG
CCTCGGCACAAGCATGCCCGCTAAGATCCTGAGGCTGCCGCTGGCGGACT
TCGGGGGGTCGGTCGTCTGCCAGCGCGGCGCGTTTCTGGCTGGCTCAGAC
ACCATCGATATCAGTACGGAGGTAACGCGGCCGATGGCGGGGCTTTTTGG
GGGCGAAGGCTTTGTGCTGCAGCGGCTCAGCGGCGAGGGCGACGCCTTTG
TGAGCGCGTGCGGCCACGTCATGCGGCGCGACCTCAAGAGTGGCGAAGTG
CTGCGCGTAACGGCCGGATCGCTGGTGTGCTTCTCTTCAACTGTCGACTA
TGGGGTCACAACGGCTGGCGGCTTGAAGAACATCGTGTTCGGCACGGACG
GAGTTTTCTTGGCCACACTTACGGGCCCGGGGACGGTGTACCTTCAGGGC
ATGCCCTTTGACAGGCTGGTTCGAGCGATAGGCAAGGCGCTGCCGCAGAA
CGCTAGTGGCATGCCTGTGCCTCCCATCATAATACCAGGCATGGGCGGAG
GGGACAGCGGGAATGCGCCACCGGGTACGTAG
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