mRNA_17008 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178420
Unique NamemRNA_17008
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178420 vs. uniprot
Match: A0A835ZAZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ1_9STRA)

HSP 1 Score: 240 bits (613), Expect = 4.410e-76
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 
Query:    1 MLAAVDRIEANNAILVGARSKKRVGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVDXXXXXXXXXXXXXXXXXXXXXXXVPGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNASSLQGTKDTKRGAAGDTFCQCNGGCVPAAKVKVEDIWQPVSALAACLPEQTYGVDALGTL 777
            MLAAVDRIEANNAILVGARSKKRVGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVDXXXXXXXXXXXXXXXXXXXXXXXVPGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNASSLQGTKDTKRGAAGDTFCQCNGGCVPAAKVKVEDIWQPVSALAACLPEQTYGVDALGTL
Sbjct:    1 MLAAVDRIEANNAILVGARSKKRVGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVDXXXXXXXXXXXXXXXXXXXXXXXVPGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNASSLQGTKDTKRGAAGDTFCQCNGGCVPAAKVKVEDIWQPVSALAACLPEQTYGVDALGTL 259
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BLAST of jgi.p|Trimin1|178420 vs. uniprot
Match: A0A835ZG73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG73_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.730e-21
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:   22 IEANNAILVGARSKKRVGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVD 204
            ++A NAILVGARSKKRVGVR +KC GVDEGGTQCTK P+FG+ G K ATHCAAHKTPGMVD
Sbjct:    1 MKAGNAILVGARSKKRVGVRDRKCVGVDEGGTQCTKRPTFGMPGVKVATHCAAHKTPGMVD 61
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BLAST of jgi.p|Trimin1|178420 vs. uniprot
Match: A0A836CJG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG9_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.620e-19
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   22 IEANNAILVGARSKKRVGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVD 204
            ++ + AILVGAR+K+RVGVR K CAGVDEGG +CT  P+FG+ GGK A HCAAHKTPGMVD
Sbjct:    1 MKGDTAILVGARNKQRVGVRNKTCAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD 61
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BLAST of jgi.p|Trimin1|178420 vs. uniprot
Match: A0A835ZA10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA10_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.820e-18
Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 MLAAVDRIEANNAILVGARSKKRVGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVD 204
            ++AAVD ++ +NAI VGAR+KK         AGVDEGGTQCTK P FGV GGK ATHCAAHKTPGMVD
Sbjct:   14 VVAAVDTMKEDNAIFVGARNKKXXXXXXXXXAGVDEGGTQCTKVPYFGVPGGKVATHCAAHKTPGMVD 81
[Close]
BLAST of jgi.p|Trimin1|178420 vs. uniprot
Match: A0A835ZA00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA00_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.220e-17
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:   22 IEANNAILVGARSKKRVGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVD 204
            ++A NA LVGARSKKRV  R + CAGVDEGG +C K  +FG+ GGK ATHCAAHKTP MVD
Sbjct:    1 MKAGNASLVGARSKKRVKFRKRTCAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVD 61
[Close]
BLAST of jgi.p|Trimin1|178420 vs. uniprot
Match: A0A835Z7B4_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.910e-12
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   91 CAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVD 204
            CAG DE GTQCTKWPSFGVLGGK  THCAAHKTPGMVD
Sbjct:    2 CAGADERGTQCTKWPSFGVLGGKP-THCAAHKTPGMVD 38
[Close]
BLAST of jgi.p|Trimin1|178420 vs. uniprot
Match: A0A835YHI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHI1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.170e-10
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   70 VGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGM 198
            V V+ KKC GVDEGG QC++ P+FGV GGKA THCAAHK+PGM
Sbjct:    2 VDVKTKKCVGVDEGGVQCSRQPTFGVPGGKAPTHCAAHKSPGM 44
[Close]
BLAST of jgi.p|Trimin1|178420 vs. uniprot
Match: A0A835YU96_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU96_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.620e-10
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   70 VGVRYKKCAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGM 198
            V V  KKC GVDEGG +CT+ P+FGV GGKA THCAAHKTP M
Sbjct:    2 VNVTSKKCIGVDEGGAKCTRRPTFGVPGGKADTHCAAHKTPDM 44
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178420 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835ZAZ1_9STRA4.410e-76100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG73_9STRA1.730e-2180.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJG9_9STRA8.620e-1970.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA10_9STRA1.820e-1867.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA00_9STRA2.220e-1768.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7B4_9STRA1.910e-1289.47EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A835YHI1_9STRA1.170e-1072.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YU96_9STRA2.620e-1072.09EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_169contigContig_169:125778..126557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178420|e_gw1.169.62.1
Hectar predicted targeting categoryother localisation
TranscriptId178742
TrackFilteredModels1
ProteinId178420
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178420gene_17008Tribonema minus UTEX_B_3156 geneContig_169 125778..126557 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17008_1exon_17008_1Tribonema minus UTEX_B_3156 exonContig_169 125778..126557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17008CDS_17008Tribonema minus UTEX_B_3156 CDSContig_169 125778..126557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178420Trimin1|178420|e_gw1.169.62.1Tribonema minus UTEX_B_3156 polypeptideContig_169 125778..126557 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17008 ID=mRNA_17008|Name=jgi.p|Trimin1|178420|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=780bp|location=Sequence derived from alignment at Contig_169:125778..126557- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCCGCGGTGGACAGGATAGAGGCGAACAACGCAATTCTCGTTGG
TGCCAGAAGCAAGAAGCGCGTCGGCGTTAGATACAAGAAGTGCGCCGGTG
TCGACGAGGGGGGCACCCAGTGCACAAAGTGGCCGAGCTTCGGCGTGCTC
GGAGGGAAGGCTGCCACGCACTGCGCTGCGCACAAGACGCCAGGCATGGT
GGACGTCAAGCACAGGAGGTGCGCCGGTGTGGTCGAGGGGGGCGCCAATT
GCACGAGCCAGCCGGCCTTCGGCGTGCCCGGTAAGGCCCCCACGCACTGT
GCTACACACAAGACGCCGGGCATGGTCGACGTCATAAACAAGAAGTGCGC
CGGTGTGGACGAGAGCGGCACCCAGTGCACAAAGTGGCCGAGCTTCGGCG
TGCCCGGGGATAAGACCGCCACGCACTGCGCCGTGCACAGGACGCCGGGC
ATGGTCGACGTCAAAAACAAGCGGTGCACCGGTGTGGACGAGGGGGGCGC
CCAGTGCACGAGGCAGGCGTCCTTCCGCATGCCCGGGAGCAAGGCCCCCA
CGCACTGCGGCGCGCACAAGACGCCAGGCATGGTCAGCGTGAACGCAAGC
AGCTTGCAAGGCACGAAGGACACTAAGCGCGGTGCTGCTGGAGACACCTT
CTGCCAGTGCAACGGAGGTTGTGTTCCTGCAGCAAAAGTTAAAGTTGAAG
ACATTTGGCAGCCTGTGTCAGCATTGGCAGCCTGCCTGCCAGAACAAACT
TATGGCGTGGACGCCCTCGGCACCCTGTGA
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protein sequence of jgi.p|Trimin1|178420

>Trimin1|178420|e_gw1.169.62.1 ID=Trimin1|178420|e_gw1.169.62.1|Name=jgi.p|Trimin1|178420|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=260bp
MLAAVDRIEANNAILVGARSKKRVGVRYKKCAGVDEGGTQCTKWPSFGVL
GGKAATHCAAHKTPGMVDVKHRRCAGVVEGGANCTSQPAFGVPGKAPTHC
ATHKTPGMVDVINKKCAGVDESGTQCTKWPSFGVPGDKTATHCAVHRTPG
MVDVKNKRCTGVDEGGAQCTRQASFRMPGSKAPTHCGAHKTPGMVSVNAS
SLQGTKDTKRGAAGDTFCQCNGGCVPAAKVKVEDIWQPVSALAACLPEQT
YGVDALGTL*
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mRNA from alignment at Contig_169:125778..126557-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17008 ID=mRNA_17008|Name=jgi.p|Trimin1|178420|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=780bp|location=Sequence derived from alignment at Contig_169:125778..126557- (Tribonema minus UTEX_B_3156 )
ATGCTGGCCGCGGTGGACAGGATAGAGGCGAACAACGCAATTCTCGTTGG
TGCCAGAAGCAAGAAGCGCGTCGGCGTTAGATACAAGAAGTGCGCCGGTG
TCGACGAGGGGGGCACCCAGTGCACAAAGTGGCCGAGCTTCGGCGTGCTC
GGAGGGAAGGCTGCCACGCACTGCGCTGCGCACAAGACGCCAGGCATGGT
GGACGTCAAGCACAGGAGGTGCGCCGGTGTGGTCGAGGGGGGCGCCAATT
GCACGAGCCAGCCGGCCTTCGGCGTGCCCGGTAAGGCCCCCACGCACTGT
GCTACACACAAGACGCCGGGCATGGTCGACGTCATAAACAAGAAGTGCGC
CGGTGTGGACGAGAGCGGCACCCAGTGCACAAAGTGGCCGAGCTTCGGCG
TGCCCGGGGATAAGACCGCCACGCACTGCGCCGTGCACAGGACGCCGGGC
ATGGTCGACGTCAAAAACAAGCGGTGCACCGGTGTGGACGAGGGGGGCGC
CCAGTGCACGAGGCAGGCGTCCTTCCGCATGCCCGGGAGCAAGGCCCCCA
CGCACTGCGGCGCGCACAAGACGCCAGGCATGGTCAGCGTGAACGCAAGC
AGCTTGCAAGGCACGAAGGACACTAAGCGCGGTGCTGCTGGAGACACCTT
CTGCCAGTGCAACGGAGGTTGTGTTCCTGCAGCAAAAGTTAAAGTTGAAG
ACATTTGGCAGCCTGTGTCAGCATTGGCAGCCTGCCTGCCAGAACAAACT
TATGGCGTGGACGCCCTCGGCACCCTGTGA
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Coding sequence (CDS) from alignment at Contig_169:125778..126557-

>mRNA_17008 ID=mRNA_17008|Name=jgi.p|Trimin1|178420|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=780bp|location=Sequence derived from alignment at Contig_169:125778..126557- (Tribonema minus UTEX_B_3156 )
ATGCTGGCCGCGGTGGACAGGATAGAGGCGAACAACGCAATTCTCGTTGG
TGCCAGAAGCAAGAAGCGCGTCGGCGTTAGATACAAGAAGTGCGCCGGTG
TCGACGAGGGGGGCACCCAGTGCACAAAGTGGCCGAGCTTCGGCGTGCTC
GGAGGGAAGGCTGCCACGCACTGCGCTGCGCACAAGACGCCAGGCATGGT
GGACGTCAAGCACAGGAGGTGCGCCGGTGTGGTCGAGGGGGGCGCCAATT
GCACGAGCCAGCCGGCCTTCGGCGTGCCCGGTAAGGCCCCCACGCACTGT
GCTACACACAAGACGCCGGGCATGGTCGACGTCATAAACAAGAAGTGCGC
CGGTGTGGACGAGAGCGGCACCCAGTGCACAAAGTGGCCGAGCTTCGGCG
TGCCCGGGGATAAGACCGCCACGCACTGCGCCGTGCACAGGACGCCGGGC
ATGGTCGACGTCAAAAACAAGCGGTGCACCGGTGTGGACGAGGGGGGCGC
CCAGTGCACGAGGCAGGCGTCCTTCCGCATGCCCGGGAGCAAGGCCCCCA
CGCACTGCGGCGCGCACAAGACGCCAGGCATGGTCAGCGTGAACGCAAGC
AGCTTGCAAGGCACGAAGGACACTAAGCGCGGTGCTGCTGGAGACACCTT
CTGCCAGTGCAACGGAGGTTGTGTTCCTGCAGCAAAAGTTAAAGTTGAAG
ACATTTGGCAGCCTGTGTCAGCATTGGCAGCCTGCCTGCCAGAACAAACT
TATGGCGTGGACGCCCTCGGCACCCTGTGA
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