mRNA_16978 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134287
Unique NamemRNA_16978
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134287 vs. uniprot
Match: A0A835Z614_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z614_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.930e-88
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 
Query:    1 RWRLHVSVHAFSDLQAWYHGTFHEEVYRLRGPFFVRSAPLCAYRGSHRVREHAEERGTCEERTLLRKVLLGKDTRYSHVECARFLAHAVLSAEERHLFDVLVAEGVAVLICGAGGARVRRRFRLSFV 381
            RWRLHVSVHAFSDLQAWYHGTFHEEVYRLRGPFFVRSAPLCAYRGSHRVREHAEERGTCEERTLLRKVLLGKDTRYSHVECARFLAHAVLSAEERHLFDVLVAEGVAVLICGAGGARVRRRFRLSFV
Sbjct:    1 RWRLHVSVHAFSDLQAWYHGTFHEEVYRLRGPFFVRSAPLCAYRGSHRVREHAEERGTCEERTLLRKVLLGKDTRYSHVECARFLAHAVLSAEERHLFDVLVAEGVAVLICGAGGARVRRRFRLSFV 127
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BLAST of jgi.p|Trimin1|134287 vs. uniprot
Match: A0A8J2T283_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T283_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.460e-14
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 1 
Query:    1 RWRLHVSVHAFSDLQAWYHGTFHEEVYRLRGPFFVRSAPLCAYRGSHRVREHAEERGTCEERTLLRKVLLGKDTRYSHVECARFLAHAVLSAEERHLFDVLVAEGVAVLICG-AGGARVRRRFRLSFV 381
            +W LH   +A  DLQAWYH TF +E+YRLRGPF+ R A L  Y+  H V++   E    + R    ++L    T Y+ +    +   A L+ +E  LF+ L   GV+V       G   ++ F+LS V
Sbjct:  138 QWTLHARANAREDLQAWYHHTFADELYRLRGPFWWREAVLPDYKHHHIVQDTENE----DRRKAAERILCSPGTTYTAMAATMYTIRATLAEKEYSLFEALTTTGVSVTKHPFRSGRPSKKTFQLSLV 261
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134287 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z614_9STRA1.930e-88100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A8J2T283_9STRA2.460e-1435.94Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_176contigContig_176:107532..107912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134287|gw1.176.21.1
Hectar predicted targeting categoryother localisation
TranscriptId134609
TrackFilteredModels1
ProteinId134287
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134287gene_16978Tribonema minus UTEX_B_3156 geneContig_176 107532..107912 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16978_1exon_16978_1Tribonema minus UTEX_B_3156 exonContig_176 107532..107912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16978CDS_16978Tribonema minus UTEX_B_3156 CDSContig_176 107532..107912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134287Trimin1|134287|gw1.176.21.1Tribonema minus UTEX_B_3156 polypeptideContig_176 107532..107912 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16978 ID=mRNA_16978|Name=jgi.p|Trimin1|134287|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_176:107532..107912+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGTGGCGCCTGCACGTCAGCGTGCACGCCTTCAGCGACCTCCAGGCGTG
GTACCACGGAACTTTCCACGAGGAAGTGTACCGGCTCCGGGGACCGTTCT
TCGTGCGCTCCGCCCCCCTCTGCGCGTATCGCGGCTCCCACCGCGTGCGA
GAACACGCCGAGGAGCGCGGAACGTGTGAGGAACGGACCCTTCTGCGGAA
GGTTCTTCTGGGCAAGGACACGCGCTACTCGCACGTCGAGTGTGCGCGGT
TTCTGGCGCATGCGGTGTTGAGTGCAGAGGAGCGTCACCTGTTTGATGTT
TTGGTGGCGGAGGGCGTGGCAGTGCTCATATGCGGCGCGGGCGGCGCGCG
CGTGCGGCGGCGCTTCCGCCTGTCCTTCGTG
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protein sequence of jgi.p|Trimin1|134287

>Trimin1|134287|gw1.176.21.1 ID=Trimin1|134287|gw1.176.21.1|Name=jgi.p|Trimin1|134287|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
RWRLHVSVHAFSDLQAWYHGTFHEEVYRLRGPFFVRSAPLCAYRGSHRVR
EHAEERGTCEERTLLRKVLLGKDTRYSHVECARFLAHAVLSAEERHLFDV
LVAEGVAVLICGAGGARVRRRFRLSFV
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mRNA from alignment at Contig_176:107532..107912+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16978 ID=mRNA_16978|Name=jgi.p|Trimin1|134287|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_176:107532..107912+ (Tribonema minus UTEX_B_3156 )
AGGTGGCGCCTGCACGTCAGCGTGCACGCCTTCAGCGACCTCCAGGCGTG
GTACCACGGAACTTTCCACGAGGAAGTGTACCGGCTCCGGGGACCGTTCT
TCGTGCGCTCCGCCCCCCTCTGCGCGTATCGCGGCTCCCACCGCGTGCGA
GAACACGCCGAGGAGCGCGGAACGTGTGAGGAACGGACCCTTCTGCGGAA
GGTTCTTCTGGGCAAGGACACGCGCTACTCGCACGTCGAGTGTGCGCGGT
TTCTGGCGCATGCGGTGTTGAGTGCAGAGGAGCGTCACCTGTTTGATGTT
TTGGTGGCGGAGGGCGTGGCAGTGCTCATATGCGGCGCGGGCGGCGCGCG
CGTGCGGCGGCGCTTCCGCCTGTCCTTCGTG
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Coding sequence (CDS) from alignment at Contig_176:107532..107912+

>mRNA_16978 ID=mRNA_16978|Name=jgi.p|Trimin1|134287|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_176:107532..107912+ (Tribonema minus UTEX_B_3156 )
AGGTGGCGCCTGCACGTCAGCGTGCACGCCTTCAGCGACCTCCAGGCGTG
GTACCACGGAACTTTCCACGAGGAAGTGTACCGGCTCCGGGGACCGTTCT
TCGTGCGCTCCGCCCCCCTCTGCGCGTATCGCGGCTCCCACCGCGTGCGA
GAACACGCCGAGGAGCGCGGAACGTGTGAGGAACGGACCCTTCTGCGGAA
GGTTCTTCTGGGCAAGGACACGCGCTACTCGCACGTCGAGTGTGCGCGGT
TTCTGGCGCATGCGGTGTTGAGTGCAGAGGAGCGTCACCTGTTTGATGTT
TTGGTGGCGGAGGGCGTGGCAGTGCTCATATGCGGCGCGGGCGGCGCGCG
CGTGCGGCGGCGCTTCCGCCTGTCCTTCGTG
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