mRNA_16951 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178244
Unique NamemRNA_16951
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178244 vs. uniprot
Match: A0A835Z6X7_9STRA (Amino_oxidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X7_9STRA)

HSP 1 Score: 262 bits (669), Expect = 3.290e-88
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 
Query:    1 LPWSVALPSATDNETVIIGTYDYNRSAVNVVEGDQARFTFTHTSVTPEAQRLRLSVAALQGRKRTHFAGAWTSGLGHHEDAVRSGIEAANRIMAGAGAYPVLERAVPLHQPFAPSSAPAANXXXXXXXXXALFEPQPQNVVTF 429
            LPWSVALPSATDNETVIIGTYDYNRSAVNVVEGDQARFTFTHTSVTPEAQRLRLSVAALQGRKRTHFAGAWTSGLGHHEDAVRSGIEAANRIMAGAGAYPVLERAVPLHQPFAPSSAPAANXXXXXXXXXALFEPQPQNVVTF
Sbjct:    1 LPWSVALPSATDNETVIIGTYDYNRSAVNVVEGDQARFTFTHTSVTPEAQRLRLSVAALQGRKRTHFAGAWTSGLGHHEDAVRSGIEAANRIMAGAGAYPVLERAVPLHQPFAPSSAPAANXXXXXXXXXALFEPQPQNVVTF 143
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BLAST of jgi.p|Trimin1|178244 vs. uniprot
Match: A0A1I7KW88_9BURK (Predicted NAD/FAD-binding protein n=3 Tax=unclassified Polaromonas TaxID=2638319 RepID=A0A1I7KW88_9BURK)

HSP 1 Score: 56.2 bits (134), Expect = 1.880e-6
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  112 FTFTHTSVTPEAQRLRLSVAALQGRKRTHFAGAWTSGLGHHEDAVRSGIEAANRIMAGAG 291
            F + H      A R +  V ALQG++ T+F GAWT G G HED ++SG++AAN ++ GAG
Sbjct:  379 FDYAHPVFDLAAIRAQRDVPALQGQRHTYFCGAWT-GYGFHEDGLKSGLQAANLLLQGAG 437
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178244 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z6X7_9STRA3.290e-88100.00Amino_oxidase domain-containing protein n=1 Tax=Tr... [more]
A0A1I7KW88_9BURK1.880e-646.67Predicted NAD/FAD-binding protein n=3 Tax=unclassi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_167contigContig_167:201864..202295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178244|e_gw1.167.22.1
BRITEko00000
KEGG koko:K06954
Descriptionamine oxidase
COG categoryS
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG2907@1|root,COG2907@2|Bacteria,1MV4Z@1224|Proteobacteria,2TQUH@28211|Alphaproteobacteria,4BBYY@82115|Rhizobiaceae
Evalue4.95e-06
Seed ortholog491916.RHECIAT_CH0001868
Hectar predicted targeting categoryother localisation
TranscriptId178566
TrackFilteredModels1
ProteinId178244
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178244gene_16951Tribonema minus UTEX_B_3156 geneContig_167 201864..202295 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16951_1exon_16951_1Tribonema minus UTEX_B_3156 exonContig_167 201864..202295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16951CDS_16951Tribonema minus UTEX_B_3156 CDSContig_167 201864..202295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178244Trimin1|178244|e_gw1.167.22.1Tribonema minus UTEX_B_3156 polypeptideContig_167 201864..202295 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16951 ID=mRNA_16951|Name=jgi.p|Trimin1|178244|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_167:201864..202295- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCCCGTGGTCCGTCGCGCTGCCGAGCGCCACCGACAACGAGACCGTCAT
CATCGGCACGTACGACTACAACCGCAGCGCCGTCAACGTCGTGGAGGGCG
ACCAGGCGCGCTTCACCTTCACGCACACCAGCGTCACGCCGGAGGCGCAG
CGGCTGCGGCTGAGCGTTGCCGCGCTGCAGGGCCGCAAGCGCACGCACTT
TGCGGGGGCGTGGACCTCAGGCCTCGGGCACCACGAGGACGCGGTGAGGT
CGGGTATTGAGGCGGCCAACAGGATCATGGCGGGGGCGGGTGCTTATCCC
GTGCTGGAGAGGGCGGTGCCGCTGCACCAGCCGTTTGCGCCGTCATCTGC
GCCCGCTGCCAACGCTGCCACCGCCGCCGCCGCTGCCGCTGCGCTGTTTG
AGCCGCAGCCGCAGAACGTGGTCACGTTCTGA
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protein sequence of jgi.p|Trimin1|178244

>Trimin1|178244|e_gw1.167.22.1 ID=Trimin1|178244|e_gw1.167.22.1|Name=jgi.p|Trimin1|178244|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
LPWSVALPSATDNETVIIGTYDYNRSAVNVVEGDQARFTFTHTSVTPEAQ
RLRLSVAALQGRKRTHFAGAWTSGLGHHEDAVRSGIEAANRIMAGAGAYP
VLERAVPLHQPFAPSSAPAANAATAAAAAAALFEPQPQNVVTF*
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mRNA from alignment at Contig_167:201864..202295-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16951 ID=mRNA_16951|Name=jgi.p|Trimin1|178244|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_167:201864..202295- (Tribonema minus UTEX_B_3156 )
CTCCCGTGGTCCGTCGCGCTGCCGAGCGCCACCGACAACGAGACCGTCAT
CATCGGCACGTACGACTACAACCGCAGCGCCGTCAACGTCGTGGAGGGCG
ACCAGGCGCGCTTCACCTTCACGCACACCAGCGTCACGCCGGAGGCGCAG
CGGCTGCGGCTGAGCGTTGCCGCGCTGCAGGGCCGCAAGCGCACGCACTT
TGCGGGGGCGTGGACCTCAGGCCTCGGGCACCACGAGGACGCGGTGAGGT
CGGGTATTGAGGCGGCCAACAGGATCATGGCGGGGGCGGGTGCTTATCCC
GTGCTGGAGAGGGCGGTGCCGCTGCACCAGCCGTTTGCGCCGTCATCTGC
GCCCGCTGCCAACGCTGCCACCGCCGCCGCCGCTGCCGCTGCGCTGTTTG
AGCCGCAGCCGCAGAACGTGGTCACGTTCTGA
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Coding sequence (CDS) from alignment at Contig_167:201864..202295-

>mRNA_16951 ID=mRNA_16951|Name=jgi.p|Trimin1|178244|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_167:201864..202295- (Tribonema minus UTEX_B_3156 )
CTCCCGTGGTCCGTCGCGCTGCCGAGCGCCACCGACAACGAGACCGTCAT
CATCGGCACGTACGACTACAACCGCAGCGCCGTCAACGTCGTGGAGGGCG
ACCAGGCGCGCTTCACCTTCACGCACACCAGCGTCACGCCGGAGGCGCAG
CGGCTGCGGCTGAGCGTTGCCGCGCTGCAGGGCCGCAAGCGCACGCACTT
TGCGGGGGCGTGGACCTCAGGCCTCGGGCACCACGAGGACGCGGTGAGGT
CGGGTATTGAGGCGGCCAACAGGATCATGGCGGGGGCGGGTGCTTATCCC
GTGCTGGAGAGGGCGGTGCCGCTGCACCAGCCGTTTGCGCCGTCATCTGC
GCCCGCTGCCAACGCTGCCACCGCCGCCGCCGCTGCCGCTGCGCTGTTTG
AGCCGCAGCCGCAGAACGTGGTCACGTTCTGA
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