mRNA_16949 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178307
Unique NamemRNA_16949
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Match: A0A835Z7Z4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z4_9STRA)

HSP 1 Score: 372 bits (956), Expect = 1.570e-130
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 
Query:    1 MVALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPEALPDGGTLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPFVLLEASMAAGEVELTVSVGSDAGADFEGLSSHPGASAAVSTPASSGGEGGEWAVNGGAGGAHLGGGRRRSVEQGVPSFVNHFGWCTWDSW 561
            MVALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPEALPDGGTLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPFVLLEASMAAGEVELTVSVGSDAGADFEGLSSHPGASAAVSTPASSGGEGGEWAVNGGAGGAHLGGGRRRSVEQGVPSFVNHFGWCTWDSW
Sbjct:    1 MVALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPEALPDGGTLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPFVLLEASMAAGEVELTVSVGSDAGADFEGLSSHPGASAAVSTPASSGGEGGEWAVNGGAGGAHLGGGRRRSVEQGVPSFVNHFGWCTWDSW 187
[Close]
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Match: D7FLK5_ECTSI (Alpha-galactosidase N-terminal, family GH36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK5_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.900e-28
Identity = 77/197 (39.09%), Postives = 98/197 (49.75%), Query Frame = 1 
Query:    1 MVALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPEALPDGGTLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAY-VHALYIAVGADPFVLLEASMAAGEVELT--VSVGS-DAGA-------DFEGLSSHPGASAAVSTPASSGGEGGEWAVNGGAGGAHLGGGRRRSVEQGVPSFVNHFGWCTWDS 558
            M+AL+RFKLWWM P H    + +PPETQ++L + P     G  LY +FIPL+DG  KC+LKG  D++L + AETGCP TPVP+  V  LY+ V  DPF L+E S       L   V  GS  AG        D E   S    S  +S                            + V++  P F N+ GWCTWDS
Sbjct:  225 MMALARFKLWWMMPKHTTKANEIPPETQMMLTKLPPDPETGRQLYGLFIPLIDGQAKCNLKGLPDRSLQLFAETGCPNTPVPSSDVAGLYVGVDEDPFKLVEKSFKLVNARLRNQVKAGSFGAGGLVPGLVHDAEKQLSRWKKSEVIS----------------------------KKVDKTSPDFSNYLGWCTWDS 393
[Close]
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Match: A0A6H5JFU4_9PHAE (Galactinol--sucrose galactosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.080e-27
Identity = 77/197 (39.09%), Postives = 97/197 (49.24%), Query Frame = 1 
Query:    1 MVALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPEALPDGGTLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAY-VHALYIAVGADPFVLLEASMAAGEVELT--VSVGS-DAGA-------DFEGLSSHPGASAAVSTPASSGGEGGEWAVNGGAGGAHLGGGRRRSVEQGVPSFVNHFGWCTWDS 558
            M+AL+RFKLWWM P H    + +PPETQ++L + P     G  LY +FIPL+DG  KC+LKG  D++L + AETGCP TPVP+  V  LY+ V  DPF L+E S       L   V  GS  AG        D E   S    S  +S                            + V+   P F N+ GWCTWDS
Sbjct:  195 MMALARFKLWWMMPKHTTKANEIPPETQMMLTKLPPDPETGRQLYGLFIPLIDGQAKCNLKGLPDRSLQLFAETGCPDTPVPSSDVAGLYVGVDEDPFKLVEKSFKLVNTRLRNQVKAGSFGAGGLVPGLVHDAEKQLSRWKKSEVIS----------------------------KKVDNTSPDFSNYLGWCTWDS 363
[Close]
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Match: A0A7N0VHL2_KALFE (Galactinol--sucrose galactosyltransferase n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0VHL2_KALFE)

HSP 1 Score: 75.9 bits (185), Expect = 1.110e-12
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    4 VALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPEALPDGG---TLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPF 291
            +A  RFKLWWM        S +P ETQ L+ ET +   DGG   +LYTVF+PL++G  +  L+G   + + +  E+G  GT   ++ H+L+I  GADPF
Sbjct:   70 MACFRFKLWWMAQRMGDRGSQIPLETQFLIMETKQGS-DGGRSQSLYTVFLPLIEGSFRACLQGNEAEEVEMCLESGDLGTTASSFTHSLFITTGADPF 167
[Close]
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Match: A0A2P5DUV0_PARAD (Galactinol--sucrose galactosyltransferase n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5DUV0_PARAD)

HSP 1 Score: 73.9 bits (180), Expect = 5.130e-12
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 1 
Query:    4 VALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPEA--LPDGG--------TLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPFVLLEASMAAGEVEL 333
            +A  RFKLWWM        S +P ETQ LL ET +   L  GG        T+YTVF+PL++G  +  L+G     L +  E+G  GT   ++ H+L+I  G DPF  +  ++ A ++ L
Sbjct:   69 MATFRFKLWWMAQKMGDRGSEIPLETQFLLVETKDGSHLEPGGDDGSDENRTVYTVFLPLVEGPFRACLQGNHQDKLELCLESGDVGTKASSFTHSLFIHAGTDPFAAVREAVTAVKLHL 188
[Close]
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Match: A0A1Y1I231_KLENI (Galactinol--sucrose galactosyltransferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I231_KLENI)

HSP 1 Score: 72.4 bits (176), Expect = 1.740e-11
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:    7 ALSRFKLWWMRPSHIAHPSAVPPETQLLLGETP-----EALPDGGTLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPFVLLEASMAAGE 324
            A  RFKLWWM        S +P ETQ LL +TP     +A     T+YTVF+P+L+G  + SL G+  + L+++ E+G           A+Y+  G+DPF ++  ++ A E
Sbjct:   76 ACFRFKLWWMSQCMGTTASEIPTETQFLLVQTPGDAGSDAPASKETVYTVFLPVLEGAFRASLAGSPSEELNLIVESGDAAVQTDMVSSAVYVHSGSDPFAVISDAIRAVE 186
[Close]
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Match: UPI0008A0F2F0 (probable galactinol--sucrose galactosyltransferase 2 isoform X2 n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=UPI0008A0F2F0)

HSP 1 Score: 71.2 bits (173), Expect = 4.240e-11
Identity = 51/181 (28.18%), Postives = 72/181 (39.78%), Query Frame = 1 
Query:   16 RFKLWWMRPSHIAHPSAVPPETQLLLGETPEALPDGGTLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPFVLLEASMAAGEVELTVSVGSDAGADFEGLSSHPGASAAVSTPASSGGEGGEWAVNGGAGGAHLGGGRRRSVEQGVPSFVNHFGWCTWDS 558
            RFKLWWM          VP ETQ LL E  EA  +  T+YTVF+PLLDG  +  L+G     + +  E+G         +H +Y+  GA+PF ++  ++ A E  L                                                         ++ +PSFV+ FGWCTWD+
Sbjct:   73 RFKLWWMTQRMGTCGRDVPLETQFLLVEGKEA--EASTVYTVFLPLLDGPFRAVLQGNDKDEIEICLESGDEAVETKQGMHMVYMHAGANPFEVISQAVKAVEKHLQTF--------------------------------------------------HHREKKKLPSFVDWFGWCTWDA 201
[Close]
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Match: K3Y5P6_SETIT (Galactinol--sucrose galactosyltransferase n=2 Tax=Setaria italica TaxID=4555 RepID=K3Y5P6_SETIT)

HSP 1 Score: 71.2 bits (173), Expect = 4.270e-11
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:    4 VALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPE----ALPDGGTLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPFVLLEASM 312
            ++L RFK+WWM P+  A  + VP ETQ++L E+ +    A  +GG +Y + +P LDG  + SL+G+ +  L    E+G P       V A++I  G +PF L++ S+
Sbjct:  204 LSLFRFKIWWMVPATGAGAATVPAETQMMLLESRDEEGSAAAEGGAVYALMLPALDGDFRVSLQGSPENELQFCLESGDPEVQTMEAVDAVFINSGDNPFKLMKESI 310
[Close]
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Match: S8CXM5_9LAMI (Galactinol--sucrose galactosyltransferase n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CXM5_9LAMI)

HSP 1 Score: 71.2 bits (173), Expect = 4.400e-11
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:    4 VALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPEALPDGG--TLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPFVLLEASM 312
            +A  RFKLWWM          +P ETQ LL E+ E  P     T+YTVF+PL++G  K  L+G     L +  E+G       ++ HA+YI+ G DPF  +  +M
Sbjct:  119 LACFRFKLWWMAQKMGDKGRDIPLETQFLLIESKEGSPSETKETVYTVFLPLIEGPFKACLQGNERDELELCLESGDADATGSSFTHAVYISAGTDPFATINEAM 223
[Close]
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Match: K3Y540_SETIT (Galactinol--sucrose galactosyltransferase n=13 Tax=Paniceae TaxID=147428 RepID=K3Y540_SETIT)

HSP 1 Score: 71.2 bits (173), Expect = 4.480e-11
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:    4 VALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPE----ALPDGGTLYTVFIPLLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPFVLLEASM 312
            ++L RFK+WWM P+  A  + VP ETQ++L E+ +    A  +GG +Y + +P LDG  + SL+G+ +  L    E+G P       V A++I  G +PF L++ S+
Sbjct:  204 LSLFRFKIWWMVPATGAGAATVPAETQMMLLESRDEEGSAAAEGGAVYALMLPALDGDFRVSLQGSPENELQFCLESGDPEVQTMEAVDAVFINSGDNPFKLMKESI 310
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178307 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7Z4_9STRA1.570e-130100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FLK5_ECTSI2.900e-2839.09Alpha-galactosidase N-terminal, family GH36 n=1 Ta... [more]
A0A6H5JFU4_9PHAE3.080e-2739.09Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A7N0VHL2_KALFE1.110e-1241.41Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A2P5DUV0_PARAD5.130e-1236.67Galactinol--sucrose galactosyltransferase n=2 Tax=... [more]
A0A1Y1I231_KLENI1.740e-1136.04Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
UPI0008A0F2F04.240e-1128.18probable galactinol--sucrose galactosyltransferase... [more]
K3Y5P6_SETIT4.270e-1136.45Galactinol--sucrose galactosyltransferase n=2 Tax=... [more]
S8CXM5_9LAMI4.400e-1138.10Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
K3Y540_SETIT4.480e-1136.45Galactinol--sucrose galactosyltransferase n=13 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_167contigContig_167:173288..174272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178307|e_gw1.167.87.1
DescriptionRaffinose synthase or seed imbibition protein Sip1
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGs2CC3R@1|root,2QQDV@2759|Eukaryota,37T96@33090|Viridiplantae,3GDWP@35493|Streptophyta,3KY33@4447|Liliopsida,3IDIG@38820|Poales
Evalue4.6e-13
Seed ortholog4558.Sb06g020280.1
Hectar predicted targeting categorymitochondrion
TranscriptId178629
TrackFilteredModels1
ProteinId178307
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178307gene_16949Tribonema minus UTEX_B_3156 geneContig_167 173288..174272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178307Trimin1|178307|e_gw1.167.87.1Tribonema minus UTEX_B_3156 polypeptideContig_167 173288..174272 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16949_2exon_16949_2Tribonema minus UTEX_B_3156 exonContig_167 173288..173536 -
exon_16949_1exon_16949_1Tribonema minus UTEX_B_3156 exonContig_167 173958..174272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16949CDS_16949Tribonema minus UTEX_B_3156 CDSContig_167 173958..174272 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16949 ID=mRNA_16949|Name=jgi.p|Trimin1|178307|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=564bp|location=Sequence derived from alignment at Contig_167:173288..174272- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGCTCAGCAGGTTCAAGCTCTGGTGGATGCGCCCCTCGCACAT
CGCGCACCCCTCCGCGGTCCCCCCCGAGACGCAGCTGCTGCTCGGCGAGA
CCCCGGAGGCGCTGCCCGACGGCGGCACGCTGTACACCGTATTCATTCCG
CTGCTGGACGGAGTGGTCAAGTGCTCGCTGAAAGGCGCCGCGGATCAGAC
GCTGCACGTGGTGGCCGAGACGGGGTGTCCGGGGACGCCGGTGCCGGCAT
ACGTGCACGCGCTGTACATCGCGGTGGGGGCGGACCCTTTTGTGCTGCTG
GAGGCGTCCATGGCCGCGGGCGAAGTTGAACTTACAGTTAGCGTGGGCTC
TGATGCAGGGGCGGATTTTGAGGGCCTCAGCTCTCACCCTGGCGCTAGCG
CGGCGGTTTCAACGCCGGCGTCGTCCGGGGGGGAGGGGGGGGAGTGGGCG
GTGAATGGGGGTGCGGGGGGGGCACATCTGGGGGGCGGGAGGCGGCGGTC
GGTGGAGCAAGGCGTGCCCTCGTTTGTCAATCACTTCGGGTGGTGCACCT
GGGACAGCTGGTGA
back to top

protein sequence of jgi.p|Trimin1|178307

>Trimin1|178307|e_gw1.167.87.1 ID=Trimin1|178307|e_gw1.167.87.1|Name=jgi.p|Trimin1|178307|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=188bp
MVALSRFKLWWMRPSHIAHPSAVPPETQLLLGETPEALPDGGTLYTVFIP
LLDGVVKCSLKGAADQTLHVVAETGCPGTPVPAYVHALYIAVGADPFVLL
EASMAAGEVELTVSVGSDAGADFEGLSSHPGASAAVSTPASSGGEGGEWA
VNGGAGGAHLGGGRRRSVEQGVPSFVNHFGWCTWDSW*
back to top

mRNA from alignment at Contig_167:173288..174272-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16949 ID=mRNA_16949|Name=jgi.p|Trimin1|178307|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=985bp|location=Sequence derived from alignment at Contig_167:173288..174272- (Tribonema minus UTEX_B_3156 )
ATGGTGGCGCTCAGCAGGTTCAAGCTCTGGTGGATGCGCCCCTCGCACAT
CGCGCACCCCTCCGCGGTCCCCCCCGAGACGCAGCTGCTGCTCGGCGAGA
CCCCGGAGGCGCTGCCCGACGGCGGCACGCTGTACACCGTATTCATTCCG
CTGCTGGACGGAGTGGTCAAGTGCTCGCTGAAAGGCGCCGCGGATCAGAC
GCTGCACGTGGTGGCCGAGACGGGGTGTCCGGGGACGCCGGTGCCGGCAT
ACGTGCACGCGCTGTACATCGCGGTGGGGGCGGACCCTTTTGTGCTGCTG
GAGGCGTCCATGGCCGTCGTGAGGAAGTGAGTTGAGCACTGCCGTGCACA
CGGCTGTTTGAAGTTTGCTAGTCCCTGTCTGCCTTCTGTGTGCGGCGCAC
ACCCCTGATTTGTGTGCGTCACAGACGTAGAGTGCTGAGACTCCACAGCA
GTCGCGATTCGATCAAAACGTGGAGCGTTCACCATTGGCAGCATCATATG
CATCGGAAGCAGTATCATGCACTTCCCGCATGCCACCGCCAGCCACATGC
CTGATCTCACAGCCCTCACGCGCTGTTTTCTCGTCGCCCCCCCCCCCCCC
CCCCCCCACCCGCCTGGCGTGCAGATACCACGCCGACTCAGCGACGCCCG
CTGCGGACCTCAGCACCGCGGCCAGTGAGGCGCATGGCCTGGATGCAGCA
GAGGAGGCTCAGCTGGACAGCGCAGCAGTGATCGAGGCGGGCGAAGTTGA
ACTTACAGTTAGCGTGGGCTCTGATGCAGGGGCGGATTTTGAGGGCCTCA
GCTCTCACCCTGGCGCTAGCGCGGCGGTTTCAACGCCGGCGTCGTCCGGG
GGGGAGGGGGGGGAGTGGGCGGTGAATGGGGGTGCGGGGGGGGCACATCT
GGGGGGCGGGAGGCGGCGGTCGGTGGAGCAAGGCGTGCCCTCGTTTGTCA
ATCACTTCGGGTGGTGCACCTGGGACAGCTGGTGA
back to top

Coding sequence (CDS) from alignment at Contig_167:173288..174272-

>mRNA_16949 ID=mRNA_16949|Name=jgi.p|Trimin1|178307|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=564bp|location=Sequence derived from alignment at Contig_167:173288..174272- (Tribonema minus UTEX_B_3156 )
ATGGTGGCGCTCAGCAGGTTCAAGCTCTGGTGGATGCGCCCCTCGCACAT
CGCGCACCCCTCCGCGGTCCCCCCCGAGACGCAGCTGCTGCTCGGCGAGA
CCCCGGAGGCGCTGCCCGACGGCGGCACGCTGTACACCGTATTCATTCCG
CTGCTGGACGGAGTGGTCAAGTGCTCGCTGAAAGGCGCCGCGGATCAGAC
GCTGCACGTGGTGGCCGAGACGGGGTGTCCGGGGACGCCGGTGCCGGCAT
ACGTGCACGCGCTGTACATCGCGGTGGGGGCGGACCCTTTTGTGCTGCTG
GAGGCGTCCATGGCCGCGGGCGAAGTTGAACTTACAGTTAGCGTGGGCTC
TGATGCAGGGGCGGATTTTGAGGGCCTCAGCTCTCACCCTGGCGCTAGCG
CGGCGGTTTCAACGCCGGCGTCGTCCGGGGGGGAGGGGGGGGAGTGGGCG
GTGAATGGGGGTGCGGGGGGGGCACATCTGGGGGGCGGGAGGCGGCGGTC
GGTGGAGCAAGGCGTGCCCTCGTTTGTCAATCACTTCGGGTGGTGCACCT
GGGACAGCTGGTGA
back to top