mRNA_16927 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Match: A0A836CJI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI0_9STRA) HSP 1 Score: 410 bits (1053), Expect = 7.980e-144 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1
Query: 1 MRSSTPDGESAGRKRKRDDDGDAAQATDSHEHNAEVREAIKELQLHAAVLITHSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHGKLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHLRNALSSIMKRVGDLELATNDELLRQQLTLLPEAALGHCSVMTDSLLEPRAL 630
MRSSTPDGESAGRKRKRDDDGDAAQATDSHEHNAEVREAIKELQLHAAVLITHSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHGKLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHLRNALSSIMKRVGDLELATNDELLRQQLTLLPEAALGHCSVMTDSLLEPRAL
Sbjct: 1 MRSSTPDGESAGRKRKRDDDGDAAQATDSHEHNAEVREAIKELQLHAAVLITHSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHGKLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHLRNALSSIMKRVGDLELATNDELLRQQLTLLPEAALGHCSVMTDSLLEPRAL 210
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Match: A0A836CJH4_9STRA (BACK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH4_9STRA) HSP 1 Score: 183 bits (464), Expect = 4.180e-51 Identity = 91/170 (53.53%), Postives = 127/170 (74.71%), Query Frame = 1
Query: 76 ATDSHEHNA-EVREAIKELQLHAAVLITHSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHGKLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHLRNALSSIMKRVGDLELATNDELLRQQLTLLPEAAL 582
A+D H+++A + ++L LHAA+L HSSVL ++LSRW+GP+RP RI IEL+++AEV A EDV+W MYHGK+PAE+ +T++RAL A+ A+ +A E LC A WL+ QA L WD+ LRL D P VR+RL +NA +++++R GDLE+A NDE LR+QL LPEAA+
Sbjct: 82 ASDHHDNDAFKSPPGARQLDLHAAILSVHSSVLRARLSRWSGPDRPVRINIELDDEAEVAALEDVMWGMYHGKVPAED-MTVERALLIARTANAHAVEIVLCAATAWLNQQASLAWDDVLRLCDTPATVRDRLDFKNAQAAMLQRAGDLEVAMNDEQLRKQLIELPEAAM 250
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Match: A0A835Z3I7_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I7_9STRA) HSP 1 Score: 183 bits (465), Expect = 6.190e-51 Identity = 94/169 (55.62%), Postives = 119/169 (70.41%), Query Frame = 1
Query: 76 ATDSHEHNAEVREAIKELQLHAAVLITHSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHGKLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHLRNALSSIMKRVGDLELATNDELLRQQLTLLPEAAL 582
A H N + L HAA+LI HSSVL +KL RWTGPERP I IEL+++AEV AFEDV+W+MYHGKLPA+ ++++RAL A++AD YA LC A WL+ QA WD+ALR F+AP VR+RL L+NA ++I++R DLE A NDE L QQLT LPEAA+
Sbjct: 350 AASGHHDNDASPLGARRLHAHAAILIMHSSVLETKLRRWTGPERPVHINIELDDEAEVTAFEDVMWSMYHGKLPADN-MSMERALLIARLADAYAVNIVLCAATAWLNQQASPAWDDALRTFEAPASVRDRLDLQNAQAAILERAEDLEKAMNDEELHQQLTELPEAAV 517
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Match: A0A835Z420_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z420_9STRA) HSP 1 Score: 179 bits (453), Expect = 3.280e-49 Identity = 89/171 (52.05%), Postives = 126/171 (73.68%), Query Frame = 1
Query: 70 AQATDSHEHNAEVREAIKELQLHAAVLITHSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHGKLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHLRNALSSIMKRVGDLELATNDELLRQQLTLLPEAAL 582
A A++ H+ A + +++L HAAVL HSSVL ++LSRWT PERP + IEL+++AEV AF++ +W+MYHGKLP E+ +T++RAL A++AD YA E LC A W++ QA L WD+ALR+F+AP VRERL L+ A +++++ GDLE A ND +R+QL +LPEAAL
Sbjct: 79 AAASEHHDDEA-LPTGVRQLHAHAAVLSMHSSVLETRLSRWTWPERPVLVNIELDDEAEVAAFQEGMWSMYHGKLPTED-MTVERALLIARLADAYAVEIVLCAATAWINQQASLAWDDALRIFEAPASVRERLDLKKAQTAMLESAGDLEEAMNDGQVRKQLIMLPEAAL 247
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Match: A0A835Z2E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2E5_9STRA) HSP 1 Score: 178 bits (451), Expect = 4.620e-49 Identity = 91/163 (55.83%), Postives = 118/163 (72.39%), Query Frame = 1
Query: 127 LQLHAAVLITHSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHGKLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHLRNALSSIMKRVGDLELATNDELLRQQLTLLPEAALGHCSVMTDSLL 615
L LHA+VLI HS+VL ++L+RWTG ERP RI IEL ++A+ AFEDV+WAMYH KLPAE +T+QRAL AQ+AD YA E L +WL Q +L WD+A R+FDAP +ERL + A +I++R GDLE+A NDE +R QL LPEAAL ++++DS L
Sbjct: 289 LLLHASVLIMHSTVLQARLTRWTGTERPVRINIELGDEAQEAAFEDVIWAMYHNKLPAE--MTVQRALRIAQLADAYAMENVLFFGIQWLSQQQELSWDDAARMFDAPLSTQERLQMGKAFEAILQRAGDLEVAMNDEQVRNQLASLPEAALA--ALLSDSRL 447
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Match: A0A835YNA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA7_9STRA) HSP 1 Score: 169 bits (427), Expect = 4.750e-45 Identity = 92/188 (48.94%), Postives = 129/188 (68.62%), Query Frame = 1
Query: 31 AGRKRKRDDDGDAAQATDSHEHNAEVREAI----KELQLHAAVLITHSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHGKLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHLRNALSSIMKRVGDLELATNDELLRQQLTLLPEAAL 582
A RKRKR A E+ EA+ K L +H+ VLI HSSVL SK+ + G ERP RI+I+L+++A+V AFEDV+W MYHGKLPAE+ +T++RAL A++AD Y + LC A +WL+ QA L D+ALR+++AP VR+R+ LR A +++++R GDLE+A ND+ +R+QL LPE AL
Sbjct: 168 ASRKRKRGAAASCKVARKQGENGGSEPEAVPPGVKRLHVHSIVLIMHSSVLRSKVISYPGAERPVRIEIKLDDEADVAAFEDVLWGMYHGKLPAED-MTVERALAIARLADAYVVKIMLCAATEWLNQQASLARDDALRVYEAPDSVRDRVDLRKAQTALLERAGDLEVAMNDQQVRRQLIRLPETAL 354
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Match: A0A835YNG8_9STRA (BACK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNG8_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.410e-41 Identity = 82/156 (52.56%), Postives = 111/156 (71.15%), Query Frame = 1
Query: 118 IKELQLHAAVLITHSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHG-KLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHLRNALSSIMKRVGDLELATNDELLRQQLTLLPEAAL 582
+K L +H+ +LI HSSVL SK+ + G ERP RI+I+L+++A+V AFEDV W MYHG KLPAE+ +T+ RAL A++AD Y L A +WL+ QA L WD+ALR+ AP VR+RL L A +++++R GDLE+A NDE +R QL LPE AL
Sbjct: 88 VKRLHVHSTILIMHSSVLRSKVISYPGAERPVRIEIKLDDEADVAAFEDVSWGMYHGGKLPAED-MTVGRALAIARLADAYVVNIVLWAAIEWLNQQASLAWDDALRVCHAPVSVRDRLDLGKATTAMLERAGDLEVAMNDEQVRTQLIELPETAL 242
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Match: A0A835YI31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI31_9STRA) HSP 1 Score: 136 bits (342), Expect = 5.040e-36 Identity = 65/119 (54.62%), Postives = 88/119 (73.95%), Query Frame = 1
Query: 157 HSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHGKLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHLRNALSSIMKRVG 513
HSSVL +KL RWTG ERP RI++EL+++A+V FEDV+W MY KLPAE +T++RAL A++AD Y ET LC A W++ QA L WD+ALR+ +AP VR+RL LR A ++++ R G
Sbjct: 2 HSSVLRNKLQRWTGAERPMRIEVELDDEADVPVFEDVLWGMYQVKLPAEN-MTVERALAIARLADAYFDETVLCAATAWINEQASLTWDDALRVCEAPVSVRDRLDLRKAQTTMLGRQG 119
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Match: A0A836CAZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ8_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.410e-33 Identity = 63/147 (42.86%), Postives = 94/147 (63.95%), Query Frame = 1
Query: 151 ITHSSVLHSKLSRWTGPERPARIQIELENDAEVDAFEDVVWAMYHGKLPAEEQLTIQRALTTAQVADTYAAETPLCLAAKWLDAQADLPWDEALRLFDAPCGVRERLHL---RNALSSIMKRVGDLELATNDELLRQQLTLLPEAAL 582
++ S VL ++L RWT PERP RI +++E+D E AFEDV+WA YH +LP E++T+ RAL+ AQ AD Y E + + A WL Q WDE L + AP G+RER + +S++++++GDLEL+ +++L LP+ AL
Sbjct: 1 MSSSGVLQARLRRWTSPERPVRIYLKMEDDQETAAFEDVLWATYHNRLPDAEKMTVVRALSIAQTADKYVVERVMSMCAAWLGEQGGFSWDEMLAVCSAPFGIRERYPVTVQERVMSTLVEQLGDLELSMIAPEQKKELLALPQPAL 147
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Match: A0A835YQM4_9STRA (BACK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM4_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.050e-17 Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 3
Query: 585 ALLSDDRLAVGAESTVAVVAMQWAQQQGLATVPDSVADCVRLKYLDAGFIAGVTHFFPQ 761
ALLSDDRLAV AESTV VA+QWA+Q+G TVPD++A+C+RLK+L+ GF AG+ HFFPQ
Sbjct: 54 ALLSDDRLAVAAESTVVAVALQWAKQRGQPTVPDAIANCIRLKHLEPGFAAGIAHFFPQ 112 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354095 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16927 ID=mRNA_16927|Name=jgi.p|Trimin1|354095|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=761bp|location=Sequence derived from alignment at Contig_208:150969..151729+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGGTCGAGCACGCCAGATGGGGAGAGTGCGGGCAGGAAAAGGAAGCGback to top protein sequence of jgi.p|Trimin1|354095 >Trimin1|354095|estExt_Genemark1.C_Ctg_2080023 ID=Trimin1|354095|estExt_Genemark1.C_Ctg_2080023|Name=jgi.p|Trimin1|354095|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=211bp MRSSTPDGESAGRKRKRDDDGDAAQATDSHEHNAEVREAIKELQLHAAVLback to top mRNA from alignment at Contig_208:150969..151729+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16927 ID=mRNA_16927|Name=jgi.p|Trimin1|354095|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=761bp|location=Sequence derived from alignment at Contig_208:150969..151729+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_208:150969..151729+ >mRNA_16927 ID=mRNA_16927|Name=jgi.p|Trimin1|354095|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=633bp|location=Sequence derived from alignment at Contig_208:150969..151729+ (Tribonema minus UTEX_B_3156 )back to top |