mRNA_16798 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130554
Unique NamemRNA_16798
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|130554 vs. uniprot
Match: A0A836CL69_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL69_9STRA)

HSP 1 Score: 157 bits (396), Expect = 8.990e-49
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL 222
            IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL
Sbjct:    1 IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL 74
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BLAST of jgi.p|Trimin1|130554 vs. uniprot
Match: A0A7S2CJK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CJK0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.050e-33
Identity = 53/74 (71.62%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    1 IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL 222
            +Y ATCSFDKWIRLFDFYSGRCLA+V+GH+ELVTG+RF+ DG RL+S+GGDGC+FVW+L   L  AM++RL EL
Sbjct:   77 MYTATCSFDKWIRLFDFYSGRCLAQVAGHAELVTGLRFSADGTRLLSVGGDGCIFVWKLGGGLVSAMAERLQEL 150
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BLAST of jgi.p|Trimin1|130554 vs. uniprot
Match: D7FN20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN20_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 5.110e-33
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL 222
            +YAA CSFDKWIRLFDFYSG CLA+V+GHSEL TGVRFT DGRRL++ GGDG MFVWRLS ELH +M DR+ EL
Sbjct: 1067 MYAAACSFDKWIRLFDFYSGECLAKVAGHSELATGVRFTPDGRRLVTTGGDGVMFVWRLSSELHESMRDRMCEL 1140
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BLAST of jgi.p|Trimin1|130554 vs. uniprot
Match: A0A7S2AWM8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWM8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.720e-31
Identity = 46/73 (63.01%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    1 IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAE 219
            +YAATCSFD+W+RLFD +SGRCLA+V GH+EL+TG+RF+ DG+RL+S+GGDGC+FVW+L+ ++ +A+ +RL E
Sbjct:  141 MYAATCSFDRWVRLFDLFSGRCLAQVGGHAELITGIRFSSDGQRLLSVGGDGCIFVWKLASQITQAIGERLEE 213
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BLAST of jgi.p|Trimin1|130554 vs. uniprot
Match: A0A7S2S3R8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3R8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 7.790e-29
Identity = 49/74 (66.22%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL 222
            +Y ATCSFDKWIRLFDFYSG C+A+V+GH+ELVTG++FT DG+RLISIGGDGC+FVW+L+  + R + +R  E+
Sbjct:  300 MYTATCSFDKWIRLFDFYSGACIAQVAGHAELVTGLKFTPDGKRLISIGGDGCIFVWKLNSAIARGIQEREKEI 373
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BLAST of jgi.p|Trimin1|130554 vs. uniprot
Match: A0A7S3CYC9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CYC9_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 1.890e-25
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:   10 ATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL 222
            AT   DK++RL DF SG CL RV GHSEL+TG++FT D RRLIS+ GDGCMFVW+L  +L RAM DRLAEL
Sbjct:  116 ATSGSDKFVRLHDFLSGECLVRVGGHSELITGLKFTPDCRRLISVAGDGCMFVWKLRSDLTRAMLDRLAEL 186
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BLAST of jgi.p|Trimin1|130554 vs. uniprot
Match: A0A7S1CEL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEL4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.440e-23
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL 222
            I A TCSFDK IR++DFY GR L+RV+ HSE+VTG+ FT D RR+IS+GGD C+ VWRL+ EL  AM +RL+E+
Sbjct:  714 ILAVTCSFDKAIRMYDFYEGRRLSRVTAHSEMVTGLAFTHDCRRMISVGGDACIMVWRLAPELTSAMRERLSEI 787
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BLAST of jgi.p|Trimin1|130554 vs. uniprot
Match: UPI0015E1E888 (mitogen-activated protein kinase-binding protein 1-like n=1 Tax=Morone saxatilis TaxID=34816 RepID=UPI0015E1E888)

HSP 1 Score: 92.8 bits (229), Expect = 3.330e-22
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    7 AATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL 222
            AA+CS DK I +FDFYSG C+A + GHSE+VTGVRF+ D R LI++ GD C+FVWRLS EL   M  RLA+L
Sbjct:   49 AASCS-DKNISIFDFYSGECVATMFGHSEIVTGVRFSSDCRHLITVSGDSCIFVWRLSPELTIRMRQRLADL 119
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BLAST of jgi.p|Trimin1|130554 vs. uniprot
Match: UPI00094E6B17 (mitogen-activated protein kinase-binding protein 1-like n=1 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094E6B17)

HSP 1 Score: 91.7 bits (226), Expect = 4.370e-22
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL 222
            +Y AT   DK I +FDFYSG C+A + GHSE+VTG++F+ D  RLIS+ GD C+FVWRLS EL   M  R+A+L
Sbjct:    8 LYIATSCSDKSINIFDFYSGECVATMFGHSEVVTGLKFSSDCTRLISVSGDSCIFVWRLSPELTLRMRQRVADL 81
[Close]
BLAST of jgi.p|Trimin1|130554 vs. uniprot
Match: A0A7S1UAY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAY3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.330e-21
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGGDGCMFVWRLSDELHRAMSDRLAEL 222
            +Y ATCS+D+W+R+ DFYSGR +AR +GH E+VT   FT DG+ L++ G DG +F W+L   +  A+SDRL EL
Sbjct:  562 LYVATCSYDRWVRITDFYSGRVVARAAGHGEVVTAAAFTPDGQNLVTAGADGVIFSWKLPPHVRTAVSDRLQEL 635
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130554 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CL69_9STRA8.990e-49100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2CJK0_9STRA2.050e-3371.62Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
D7FN20_ECTSI5.110e-3377.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2AWM8_9STRA1.720e-3163.01Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2S3R8_9STRA7.790e-2966.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3CYC9_9EUKA1.890e-2567.61Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A7S1CEL4_9STRA1.440e-2362.16Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI0015E1E8883.330e-2262.50mitogen-activated protein kinase-binding protein 1... [more]
UPI00094E6B174.370e-2256.76mitogen-activated protein kinase-binding protein 1... [more]
A0A7S1UAY3_9STRA5.330e-2152.70Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_144contigContig_144:201289..202708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130554|gw1.144.6.1
BRITEko00000,ko00001,ko03019,ko03036
KEGG Pathwayko03015,map03015
KEGG koko:K14962,ko:K21763
Preferred nameWdr90
DescriptionMitogen-activated protein
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1408@1|root,KOG1408@2759|Eukaryota
Evalue8.39e-34
Seed ortholog2880.D7FN20
Hectar predicted targeting categoryother localisation
TranscriptId130876
TrackFilteredModels1
ProteinId130554
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130554gene_16798Tribonema minus UTEX_B_3156 geneContig_144 201289..202708 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16798_1exon_16798_1Tribonema minus UTEX_B_3156 exonContig_144 201289..201446 +
exon_16798_2exon_16798_2Tribonema minus UTEX_B_3156 exonContig_144 202645..202708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16798CDS_16798Tribonema minus UTEX_B_3156 CDSContig_144 201289..201446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130554Trimin1|130554|gw1.144.6.1Tribonema minus UTEX_B_3156 polypeptideContig_144 201289..202708 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16798 ID=mRNA_16798|Name=jgi.p|Trimin1|130554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_144:201289..202708+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCTACGCGGCAACGTGCTCCTTCGACAAGTGGATTCGCCTGTTTGACTT
CTACAGCGGGCGCTGCCTCGCGCGCGTCAGCGGCCACAGCGAGCTCGTGA
CGGGCGTGCGCTTCACGCAGGATGGACGGCGGCTAATCTCCATCGGCGGC
GACGGCTGCATGTTTGTGTGGAGGCTCAGCGATGAGCTCCACCGCGCCAT
GTCCGACCGCCTGGCAGAGCTC
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protein sequence of jgi.p|Trimin1|130554

>Trimin1|130554|gw1.144.6.1 ID=Trimin1|130554|gw1.144.6.1|Name=jgi.p|Trimin1|130554|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
IYAATCSFDKWIRLFDFYSGRCLARVSGHSELVTGVRFTQDGRRLISIGG
DGCMFVWRLSDELHRAMSDRLAEL
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mRNA from alignment at Contig_144:201289..202708+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16798 ID=mRNA_16798|Name=jgi.p|Trimin1|130554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1420bp|location=Sequence derived from alignment at Contig_144:201289..202708+ (Tribonema minus UTEX_B_3156 )
ATCTACGCGGCAACGTGCTCCTTCGACAAGTGGATTCGCCTGTTTGACTT
CTACAGCGGGCGCTGCCTCGCGCGCGTCAGCGGCCACAGCGAGCTCGTGA
CGGGCGTGCGCTTCACGCAGGATGGACGGCGGCTAATCTCCATCGGCGGC
GACGGCTGGTGAGCACTGACTTTCGTTGAGCACTGCTGCGCGTCAGCGGC
CACAGCACACAGCGAGCTCGTAGCAGGAGCGCACTTTGCGCAGGCTGGTC
GGCGATTCATTTCTAGTGGCAGTGACGGCTGGTGAGCACTGACATTATAT
TTGAGCACTGCTTTATGATATGCCTCGTGTGTGTCAGCCGACACAGCACG
CAGCAGGGCGTGCACTTCAGGCAGGCTGGCAGGCGGCTTGTTTGTAGTGA
TGGCGAAGGTTGGTGAACACTGATGTCATTTGTGAGCACTGCTTCGTGAA
GGCTTGTGGGTGTCAGCAGACACAGCGCAAAGCGAGCTCGTAAGGGGCGT
GCGCTTCACGCTGGCGACTGGTCATTGATGGCAGTGATGGCTGGTGAGGT
GGACATCAGGGCGATTGAGACGACAGACGACTCATGCTGAGTCATGTCTT
GTTAGAGCTTAAAGTGGTACGGTATGCCACCGACAACCGGTGTAACTGCT
GTACATCCAATTGCACTTCAACTGGTATGCGCAGGTGGTTGCTGCAGGCA
CAGCACCAGACAGAGCTGAAATGTGCTCCATGCCCAACACACAACAACGG
ACTTCGTATGGTATACTTCTTTAAGTACGATCAAGCAGCTCAAACTACCT
CAAAGCGGATGATGTGGTTGTGCGGGTGCGGTGAGCATGTGGGCATGTAT
GCGTGCTGCAGCACGTTTGTGTGGAGGCTCAGCGATAAGCTCCGTGTCGT
ATCATCCTGCAATTCAGAGTATGAATTGGTATTGTGCGCTTTTGCGGCTG
CATATATTTCTCTGAAAGCTCACTAGAACTATTTCCGTTTTGTACCTTTT
TAATTTTCCTGCAGCATGTTTGTATGGAGGCTCAGCGATGAGCTACACCG
CGCGTATGATCATGCAGTTCAAGTGCTAAGGTTGTGTCGCTACAGTACTG
TGCACTTTTGCAGCAGTGCATTAGCCTGAAAGCTCACAATTACACGATGT
TCGTACTTGCTTGCATGTTTGTCTTTTTCCTGCAGCATGTTTGTGTGGCG
GCTGAGCGATCAGCTTCATCGCGTCTAGAAGTATGATTCACCACTTCTGG
TATGTCGCCATCCTCATGTGTCGTGTTTTCGCCAACGCATGTTTGTCTGA
AAGCTCACTTCATATTTCCATTTTGTGTTGATTTCCGCCTATTTTTTTGT
CTGCAGCATGTTTGTGTGGAGGCTCAGCGATGAGCTCCACCGCGCCATGT
CCGACCGCCTGGCAGAGCTC
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Coding sequence (CDS) from alignment at Contig_144:201289..202708+

>mRNA_16798 ID=mRNA_16798|Name=jgi.p|Trimin1|130554|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_144:201289..202708+ (Tribonema minus UTEX_B_3156 )
ATCTACGCGGCAACGTGCTCCTTCGACAAGTGGATTCGCCTGTTTGACTT
CTACAGCGGGCGCTGCCTCGCGCGCGTCAGCGGCCACAGCGAGCTCGTGA
CGGGCGTGCGCTTCACGCAGGATGGACGGCGGCTAATCTCCATCGGCGGC
GACGGCTGCATGTTTGTGTGGAGGCTCAGCGATGAGCTCCACCGCGCCAT
GTCCGACCGCCTGGCAGAGCTC
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