mRNA_16744 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176581
Unique NamemRNA_16744
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176581 vs. uniprot
Match: A0A835ZA24_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA24_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.080e-62
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASKVLYEDDQGEHSMRGYVSLRATKG 276
            EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASKVLYEDDQGEHSMRGYVSLRATKG
Sbjct:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASKVLYEDDQGEHSMRGYVSLRATKG 92
[Close]
BLAST of jgi.p|Trimin1|176581 vs. uniprot
Match: A0A835Z018_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z018_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.000e-41
Identity = 68/83 (81.93%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASKVLYEDDQGEHSMRG 249
            EWVPGG+LRDLL+DFGP+ E IASDYARQVLLGLKYLHDNHIVHRD+KCAN+LMH+NG IKLTDFGASK++YE+D  EH+MRG
Sbjct:  446 EWVPGGALRDLLNDFGPVEEHIASDYARQVLLGLKYLHDNHIVHRDIKCANLLMHENGHIKLTDFGASKMMYEEDHAEHTMRG 528
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BLAST of jgi.p|Trimin1|176581 vs. uniprot
Match: A0A836CNM0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.750e-39
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASKVLYEDDQGEHSMRG 249
            EWVPGGSLRDLLDDFGPL E++A DYARQVLLGLKYLHDNHI+HRD+K  NVL+H+NG IKLTDFGASK L+E+D  EH+M+G
Sbjct:  833 EWVPGGSLRDLLDDFGPLRESVARDYARQVLLGLKYLHDNHIIHRDIKAGNVLIHENGHIKLTDFGASKTLHEEDNAEHTMKG 915
[Close]
BLAST of jgi.p|Trimin1|176581 vs. uniprot
Match: A0A835ZB43_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB43_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.900e-37
Identity = 61/83 (73.49%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASKVLYEDDQGEHSMRG 249
            EWVPGGSLRDLL+DFGP+ E +A DYARQ+LLGL+YLHDNHI+HRD+K ANVL+H+NG IKLTDFGASK++YE+D  EH+++G
Sbjct:  812 EWVPGGSLRDLLNDFGPVRENVARDYARQMLLGLEYLHDNHIIHRDIKSANVLLHENGCIKLTDFGASKMMYEEDHAEHTLKG 894
[Close]
BLAST of jgi.p|Trimin1|176581 vs. uniprot
Match: A0A7S3PRR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PRR1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.130e-22
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASKVL 213
            EWVPGGS+ +LL  FG L+E++  +Y++Q+LLGL YLH+  ++HRD+K AN+L+   G IKL DFGASK L
Sbjct:   23 EWVPGGSISNLLQKFGRLTESVVRNYSKQILLGLNYLHNKEVIHRDIKGANILVDDRGTIKLADFGASKRL 93
[Close]
BLAST of jgi.p|Trimin1|176581 vs. uniprot
Match: F0YC78_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC78_AURAN)

HSP 1 Score: 94.7 bits (234), Expect = 1.150e-21
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASK 207
            E+VPGGSLR LLD FG L E I   Y+RQ+LLGL+YLH N I HRD+K ANVL+  +G +KL DFGASK
Sbjct:   80 EYVPGGSLRSLLDKFGKLEEDIVRLYSRQILLGLEYLHGNAIAHRDIKAANVLVSNDGSVKLADFGASK 148
[Close]
BLAST of jgi.p|Trimin1|176581 vs. uniprot
Match: UPI001FB177EC (mitogen-activated protein kinase kinase kinase NPK1-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB177EC)

HSP 1 Score: 95.5 bits (236), Expect = 5.910e-21
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASKVLYE--DDQGEHSMRG 249
            E+VPGGS+  LL + GP  E +   Y +Q+LLGL+YLHDN I+HRD+K ANVL+H+NG IKL DFGASK + E     G  SM+G
Sbjct:  151 EFVPGGSISSLLGNLGPFPEPVIRMYTKQLLLGLEYLHDNGIMHRDIKGANVLVHENGIIKLADFGASKKVVELATITGTKSMKG 235
[Close]
BLAST of jgi.p|Trimin1|176581 vs. uniprot
Match: A0A7S1SGD6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SGD6_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 1.180e-20
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASKVLYE 219
            E+VPGGS+  +LD FG  SE +   Y R++L+GL+YLH   ++HRD+K  NVL+ +NGR+KL DFGASK  +E
Sbjct:   58 EYVPGGSIASMLDRFGAFSEELCRKYTRELLMGLEYLHGCKVIHRDLKGGNVLVTRNGRVKLADFGASKAYHE 130
[Close]
BLAST of jgi.p|Trimin1|176581 vs. uniprot
Match: A0A835YK06_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK06_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.070e-20
Identity = 39/51 (76.47%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCAN 153
            EWVPGGSL+DLL+DFGP+ +T+A DYARQ+LLGL+YLHDNHI+HRD+K AN
Sbjct:  371 EWVPGGSLKDLLNDFGPMRKTVARDYARQMLLGLEYLHDNHIIHRDIKSAN 421
[Close]
BLAST of jgi.p|Trimin1|176581 vs. uniprot
Match: A0A835Z0D0_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.290e-20
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCANVLMHKNGRIKLTDFGASKVLYEDDQGEHSMRGYVSLRAT 270
            EWVPGGS   L+  FGPL E++A  Y RQVL GL YLH + I HRD+K ANVL+  +G  KL DFG S  + +      S  G   ++ T
Sbjct:   28 EWVPGGSAAALIKRFGPLGESVARCYGRQVLSGLAYLHSHQIAHRDIKGANVLIDASGTAKLADFGTSVYVLDHPHNSSSSGGATGIQGT 117
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176581 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZA24_9STRA1.080e-62100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835Z018_9STRA2.000e-4181.93Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CNM0_9STRA3.750e-3978.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZB43_9STRA2.900e-3773.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3PRR1_9STRA5.130e-2256.34Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
F0YC78_AURAN1.150e-2165.22Protein kinase domain-containing protein (Fragment... [more]
UPI001FB177EC5.910e-2156.47mitogen-activated protein kinase kinase kinase NPK... [more]
A0A7S1SGD6_9CHLO1.180e-2053.42Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A835YK06_9STRA2.070e-2076.47Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835Z0D0_9STRA2.290e-2047.78Kinase-like domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_139contigContig_139:390805..391708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176581|e_gw1.139.30.1
DescriptionMAP kinase kinase kinase activity
COG categoryS
Max annot lvl44056.XP_009037802.1|-
EggNOG OGsKOG0198@1|root,KOG0198@2759|Eukaryota
Evalue1.89e-22
Seed ortholog44056.XP_009037802.1
Hectar predicted targeting categoryother localisation
TranscriptId176903
TrackFilteredModels1
ProteinId176581
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176581gene_16744Tribonema minus UTEX_B_3156 geneContig_139 390805..391708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176581Trimin1|176581|e_gw1.139.30.1Tribonema minus UTEX_B_3156 polypeptideContig_139 390805..391708 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16744_2exon_16744_2Tribonema minus UTEX_B_3156 exonContig_139 390805..390996 -
exon_16744_1exon_16744_1Tribonema minus UTEX_B_3156 exonContig_139 391622..391708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16744CDS_16744Tribonema minus UTEX_B_3156 CDSContig_139 391622..391708 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16744 ID=mRNA_16744|Name=jgi.p|Trimin1|176581|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_139:390805..391708- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAATGGGTCCCTGGTGGGTCCTTGAGAGACTTGCTCGATGACTTCGGGCC
GCTGTCGGAGACCATAGCGAGCGACTACGCGCGGCAGGTGCTGCTGGGCC
TCAAGTACCTGCACGACAACCACATTGTTCACCGCGATGTAAAATGTGCA
AATGTACTCATGCACAAGAACGGGCGCATCAAGCTCACAGACTTTGGCGC
CAGCAAGGTGCTGTACGAGGATGACCAAGGGGAGCACAGCATGAGGGGGT
ACGTATCATTACGTGCGACTAAGGGGTAG
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protein sequence of jgi.p|Trimin1|176581

>Trimin1|176581|e_gw1.139.30.1 ID=Trimin1|176581|e_gw1.139.30.1|Name=jgi.p|Trimin1|176581|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=93bp
EWVPGGSLRDLLDDFGPLSETIASDYARQVLLGLKYLHDNHIVHRDVKCA
NVLMHKNGRIKLTDFGASKVLYEDDQGEHSMRGYVSLRATKG*
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mRNA from alignment at Contig_139:390805..391708-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16744 ID=mRNA_16744|Name=jgi.p|Trimin1|176581|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=904bp|location=Sequence derived from alignment at Contig_139:390805..391708- (Tribonema minus UTEX_B_3156 )
GAATGGGTCCCTGGTGGGTCCTTGAGAGACTTGCTCGATGACTTCGGGCC
GCTGTCGGAGACCATAGCGAGCGACTACGCGCGGCAGGTGACGCTCCCAA
CTTCAACTTCAATGTCTCGCGCGCGTGCGACTGACCTCGCGCAGATACTG
AGCGGATCTCTGCCGTCTGCAGCTGCGATCGGCCCTGCGTTTTGTGCGCA
ACTGTGAGATTGACAGTCAGTGTTGCTGGGAGTGCCCGCCGCACGTGCGA
AGCCTGGTGGCACAGCGGCACGCGCATCACGTTCACTGTCTGTTCGGCCT
TGCACCGGAAGCACAAATGCCACGTGGCGGTGTCGTTTAGAAGCGATCGG
CAATGCGCATTGAGACACTTTCAAGGTGTTCACAAAGACACATGTAGATT
CTGGTTGCAAGTTCATGGACATCCACCATCTGGGCTTTTTCGCGCCCTAA
GCGAGAATTGATAGAAAGTGCCACGGCTGTCGTACTTTTTTTGCTTCTGC
GCAAAGGGCGGAAACCTTATGACACATGCAAGATATGCAGGTCTGATGCC
CATCCAATGCATGTGTCCGCAGCGCACATGCAAGCTCGTACCTGTCGCAG
TCACGGTGCTATGCAAATACCATGGAGCATGATGACCACATTGCGCACCG
CGCCATCGACTTGTAGTACTTGACACATTACATGCGTGCCGCCGCCCCTG
CCGTTGTGCCAGGTGCTGCTGGGCCTCAAGTACCTGCACGACAACCACAT
TGTTCACCGCGATGTAAAATGTGCAAATGTACTCATGCACAAGAACGGGC
GCATCAAGCTCACAGACTTTGGCGCCAGCAAGGTGCTGTACGAGGATGAC
CAAGGGGAGCACAGCATGAGGGGGTACGTATCATTACGTGCGACTAAGGG
GTAG
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Coding sequence (CDS) from alignment at Contig_139:390805..391708-

>mRNA_16744 ID=mRNA_16744|Name=jgi.p|Trimin1|176581|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=279bp|location=Sequence derived from alignment at Contig_139:390805..391708- (Tribonema minus UTEX_B_3156 )
GAATGGGTCCCTGGTGGGTCCTTGAGAGACTTGCTCGATGACTTCGGGCC
GCTGTCGGAGACCATAGCGAGCGACTACGCGCGGCAGGTGCTGCTGGGCC
TCAAGTACCTGCACGACAACCACATTGTTCACCGCGATGTAAAATGTGCA
AATGTACTCATGCACAAGAACGGGCGCATCAAGCTCACAGACTTTGGCGC
CAGCAAGGTGCTGTACGAGGATGACCAAGGGGAGCACAGCATGAGGGGGT
ACGTATCATTACGTGCGACTAAGGGGTAG
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