mRNA_16716 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176623
Unique NamemRNA_16716
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176623 vs. uniprot
Match: A0A835Z9A7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9A7_9STRA)

HSP 1 Score: 129 bits (324), Expect = 6.190e-38
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    1 MSIVGGEGLPAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEMENASSALVPGS 204
            +SIVGGEG PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEMENASSALVPGS
Sbjct:    2 VSIVGGEGPPAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEMENASSALVPGS 69
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BLAST of jgi.p|Trimin1|176623 vs. uniprot
Match: A0A6H5KN32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN32_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.230e-8
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   28 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEMENASSALVPGS 204
            P  +ALHSGR+GGAT +   G S  +I +AGRWKS  F TY+R   +  N  S  +  S
Sbjct:   59 PTHFALHSGRIGGATQLAKQGASVVQIQRAGRWKSGAFMTYVRAGGDGANCVSRALASS 117
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BLAST of jgi.p|Trimin1|176623 vs. uniprot
Match: A0A6H5K8A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.990e-7
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   28 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPE 168
            P +YALHSGR+GGAT +   G S  +I +AGRWKS+ F  Y+R   E
Sbjct:  146 PQKYALHSGRIGGATHLASMGASVIQIQRAGRWKSSAFMVYVRAGGE 192
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BLAST of jgi.p|Trimin1|176623 vs. uniprot
Match: A0A6H5KZQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ1_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.780e-6
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:   28 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEMEN 177
            P  +ALHSGR+GGAT +   G S  +I + GRWKS    TY+R   E  N
Sbjct:  282 PTHFALHSGRIGGATQLAKQGASGVQIQRVGRWKSGAIMTYVRAGGEGAN 331
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BLAST of jgi.p|Trimin1|176623 vs. uniprot
Match: A0A662XNI5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNI5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.100e-6
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   28 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 204
            P +++ HS R+GGA A+M AG+SD  I   GRW S  F  Y RL P M  +A+S+++  S
Sbjct:  209 PNDFSCHSLRIGGACALMAAGKSDLVIRLMGRWSSWCFSVYTRLKPGMVRDAASSMIKAS 268
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BLAST of jgi.p|Trimin1|176623 vs. uniprot
Match: W2PKW8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PKW8_PHYPN)

HSP 1 Score: 50.4 bits (119), Expect = 4.540e-6
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   28 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 204
            P +Y+ HS R+GGA A++ AG+SD  I   GRW S  F  Y RL P M  + +S+++  S
Sbjct:   56 PKDYSSHSLRIGGACALLAAGKSDLVIRLMGRWSSWCFIVYTRLKPGMIRDVASSMIKAS 115
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BLAST of jgi.p|Trimin1|176623 vs. uniprot
Match: A0A6G0NHZ3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NHZ3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.590e-6
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   22 GLP-AEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 204
            GLP ++Y+ HS R+GGA A++ AG+SD  I   GRW S  F  Y RL P M  +A+S ++  S
Sbjct:  235 GLPRSDYSTHSLRIGGACALLAAGKSDLAIRLLGRWASWCFTVYTRLRPGMIRDAASCMIKAS 297
[Close]
BLAST of jgi.p|Trimin1|176623 vs. uniprot
Match: W2PLJ7_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PLJ7_PHYPN)

HSP 1 Score: 52.0 bits (123), Expect = 4.800e-6
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   28 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 204
            P +Y+ HS R+GGA A++ AG+SD  I   GRW S  F  Y RL P M  + +S+++  S
Sbjct:  697 PKDYSSHSLRIGGACALLAAGKSDLVIRLMGRWSSRCFTVYTRLKPGMIRDVASSMIKAS 756
[Close]
BLAST of jgi.p|Trimin1|176623 vs. uniprot
Match: W2QZY1_PHYPN (Uncharacterized protein n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QZY1_PHYPN)

HSP 1 Score: 52.0 bits (123), Expect = 4.850e-6
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   28 PAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPEM-ENASSALVPGS 204
            P +Y+ HS R+GGA A++ AG+SD  I   GRW S  F  Y RL P +  +A+S+++  S
Sbjct: 1101 PKDYSAHSLRIGGACALLAAGKSDLVIRLMGRWSSWCFTVYTRLKPAIIRDAASSMIKAS 1160
[Close]
BLAST of jgi.p|Trimin1|176623 vs. uniprot
Match: A0A6A3TFJ2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3TFJ2_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 5.470e-6
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   16 GEGLPA-EYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTYIRLSPE 168
            G GLP  +Y+ HS R+GGA A++ AG+SD  I   GRW S  F  Y +L PE
Sbjct:   43 GVGLPRPDYSTHSLRIGGACALLTAGKSDLGIRLLGRWASWCFTVYTKLRPE 94
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176623 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A835Z9A7_9STRA6.190e-3897.06Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A6H5KN32_9PHAE1.230e-845.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8A0_9PHAE1.990e-753.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZQ1_9PHAE1.780e-648.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A662XNI5_9STRA3.100e-645.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
W2PKW8_PHYPN4.540e-643.33Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A6G0NHZ3_9STRA4.590e-646.03Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
W2PLJ7_PHYPN4.800e-643.33Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W2QZY1_PHYPN4.850e-643.33Uncharacterized protein n=5 Tax=Phytophthora paras... [more]
A0A6A3TFJ2_9STRA5.470e-650.00Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_139contigContig_139:30741..30947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176623|e_gw1.139.41.1
Max annot lvl2759|Eukaryota
EggNOG OGs2EE2Q@1|root,2SJJA@2759|Eukaryota
Evalue2.73e-06
Seed ortholog4792.ETI35125
Hectar predicted targeting categoryother localisation
TranscriptId176945
TrackFilteredModels1
ProteinId176623
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176623gene_16716Tribonema minus UTEX_B_3156 geneContig_139 30741..30947 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16716_1exon_16716_1Tribonema minus UTEX_B_3156 exonContig_139 30741..30947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16716CDS_16716Tribonema minus UTEX_B_3156 CDSContig_139 30741..30947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176623Trimin1|176623|e_gw1.139.41.1Tribonema minus UTEX_B_3156 polypeptideContig_139 30741..30947 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16716 ID=mRNA_16716|Name=jgi.p|Trimin1|176623|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=207bp|location=Sequence derived from alignment at Contig_139:30741..30947- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAATTGTGGGGGGTGAAGGCCTACCTGCAGAGTATGCTCTCCATTC
AGGGCGAGTGGGGGGGGCCACCGCGATGATGATAGCAGGCAGGTCTGATA
CTGAAATCATGAAAGCGGGGAGGTGGAAGTCGGCAGTGTTCAGAACCTAC
ATCAGGCTTTCGCCGGAGATGGAGAATGCCTCCTCCGCACTCGTGCCGGG
TAGTTGA
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protein sequence of jgi.p|Trimin1|176623

>Trimin1|176623|e_gw1.139.41.1 ID=Trimin1|176623|e_gw1.139.41.1|Name=jgi.p|Trimin1|176623|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=69bp
MSIVGGEGLPAEYALHSGRVGGATAMMIAGRSDTEIMKAGRWKSAVFRTY
IRLSPEMENASSALVPGS*
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mRNA from alignment at Contig_139:30741..30947-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16716 ID=mRNA_16716|Name=jgi.p|Trimin1|176623|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=207bp|location=Sequence derived from alignment at Contig_139:30741..30947- (Tribonema minus UTEX_B_3156 )
ATGTCAATTGTGGGGGGTGAAGGCCTACCTGCAGAGTATGCTCTCCATTC
AGGGCGAGTGGGGGGGGCCACCGCGATGATGATAGCAGGCAGGTCTGATA
CTGAAATCATGAAAGCGGGGAGGTGGAAGTCGGCAGTGTTCAGAACCTAC
ATCAGGCTTTCGCCGGAGATGGAGAATGCCTCCTCCGCACTCGTGCCGGG
TAGTTGA
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Coding sequence (CDS) from alignment at Contig_139:30741..30947-

>mRNA_16716 ID=mRNA_16716|Name=jgi.p|Trimin1|176623|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=207bp|location=Sequence derived from alignment at Contig_139:30741..30947- (Tribonema minus UTEX_B_3156 )
ATGTCAATTGTGGGGGGTGAAGGCCTACCTGCAGAGTATGCTCTCCATTC
AGGGCGAGTGGGGGGGGCCACCGCGATGATGATAGCAGGCAGGTCTGATA
CTGAAATCATGAAAGCGGGGAGGTGGAAGTCGGCAGTGTTCAGAACCTAC
ATCAGGCTTTCGCCGGAGATGGAGAATGCCTCCTCCGCACTCGTGCCGGG
TAGTTGA
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