mRNA_16636 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Match: A0A836CMW1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW1_9STRA) HSP 1 Score: 417 bits (1073), Expect = 5.230e-148 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 Query: 1 MADLKWDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKFLEDVFGDFYTEVQTFTKRPICIAEMSSTGCICKGKPAWITLGCPLVT 594 MADLKWDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKFLEDVFGDFYTEVQTFTKRPICIAEMSSTGCICKGKPAWITLGCPLVT Sbjct: 1 MADLKWDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKFLEDVFGDFYTEVQTFTKRPICIAEMSSTGCICKGKPAWITLGCPLVT 198
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Match: A0A835ZA06_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA06_9STRA) HSP 1 Score: 366 bits (939), Expect = 3.040e-126 Identity = 175/191 (91.62%), Postives = 182/191 (95.29%), Query Frame = 1 Query: 1 MADLKWDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKFLEDVFGDFYTEVQTFTKRPICIAEMSSTGCICKGKPAWIT 573 + DLKW +VASKIDAYG+VQLVI+FIDQ A+LKKIASGAYDSKLRA GKDAAKDGRQIYVRMLHEMNGDWYNW AFFGDNTVGDFKNAYKHAVTVLRS GAN+KFQMSY ANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNK LEDVFGDFYTEVQTFTKRPICIAEMSSTG ICKGKPAWI+ Sbjct: 5 VTDLKWSYVASKIDAYGKVQLVIEFIDQGANLKKIASGAYDSKLRAFGKDAAKDGRQIYVRMLHEMNGDWYNWCAFFGDNTVGDFKNAYKHAVTVLRSTGANIKFQMSYAANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKSLEDVFGDFYTEVQTFTKRPICIAEMSSTG-ICKGKPAWIS 194
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Match: A0A835ZP96_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP96_9STRA) HSP 1 Score: 240 bits (612), Expect = 1.330e-74 Identity = 115/198 (58.08%), Postives = 146/198 (73.74%), Query Frame = 1 Query: 7 DLKWDFVASKIDAYGQVQLVIDFIDQ-EAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQ---------VCTSAYNQCGATYPKNKFLEDVFGDFYTEVQTFTKRPICIAEMSSTGCICKGKPAWI 570 DL+W +VA++++ VQLVI+F D +LKKIASGAYD L G+DA KDGR+IYVR LHE NGDWY W ++ N + DF+NAYK ++VL+S ANLKFQMS+ A NA+KKK PFKDF+VG+EYVDQ +C ++YNQCGATYPKN+ L+ + FY+ V FTKRP+CIAE+SSTG ICKGKP W+ Sbjct: 119 DLQWRYVANQLNDKKSVQLVIEFFDSGSGNLKKIASGAYDKYLIKFGRDAKKDGRRIYVRPLHEFNGDWYPWGVYYPGNNIKDFRNAYKRIISVLKSTRANLKFQMSFAAKNATKKKVPFKDFFVGNEYVDQASHRLKFKSLCVTSYNQCGATYPKNRPLKKILKTFYSSVTKFTKRPLCIAEISSTG-ICKGKPYWL 315
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Match: A0A836CBG2_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBG2_9STRA) HSP 1 Score: 220 bits (560), Expect = 6.280e-66 Identity = 104/186 (55.91%), Postives = 133/186 (71.51%), Query Frame = 1 Query: 16 WDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGA-TYPKNKFLEDVFGDFYTEVQTFTKRPICIAEMSSTGCICKGKPAWI 570 WD+VAS +D V+LV++F+D +L+ IA+G +DSK+R GK AA DGR+IY+R LHE+N WYNW F N+V DF+NA+K V+ RS GAN K+QMS+ A N+ K+ TPF+DFYVGDEYVDQVC SAYN CG TY +NK L ++ FY ++Q TKR +CIAEMSST C GK WI Sbjct: 254 WDYVASVLDKGVDVELVMEFMDNYPNLRDIANGKFDSKMRDFGKAAAADGRRIYLRPLHELNSAWYNWGVFRPGNSVSDFRNAFKRIVSTFRSTGANFKYQMSFAAKNSDKETTPFEDFYVGDEYVDQVCVSAYNSCGTGTYRENKSLPEIINTFYWQMQAITKRTMCIAEMSSTN-HCGGKATWI 438
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Match: A0A835ZDK0_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK0_9STRA) HSP 1 Score: 205 bits (521), Expect = 2.520e-60 Identity = 101/190 (53.16%), Postives = 123/190 (64.74%), Query Frame = 1 Query: 1 MADLKWDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKFLEDVFGDFYTEVQTFTKRPICIAEMSSTGCICKGKPAWI 570 + DL W V + +D V V++F D+ ++L+ IA GAYD L+ GK A KDGR I VR LHEMNG+WY W F N++ DFKNA+K V+VL+S G N KFQ+SY A NAS K PF DFY GD YVD VC SAYN CGATY +NK L + +Y E+ +P CIAEMSSTG C GK WI Sbjct: 220 VTDLDWGKVKAVLDDKKGVDFVMEFGDEGSNLRSIAQGAYDHYLQTFGKAAKKDGRTINVRPLHEMNGEWYPWCVFTPGNSLSDFKNAFKRVVSVLKSTGGNFKFQLSYAAQNASGHKNPFMDFYPGDAYVDAVCVSAYNLCGATYDENKPLAESLLPWYAEMSRSVNKPFCIAEMSSTG-FCNGKDQWI 408
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Match: A0A835Z777_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z777_9STRA) HSP 1 Score: 200 bits (508), Expect = 4.290e-56 Identity = 95/191 (49.74%), Postives = 120/191 (62.83%), Query Frame = 1 Query: 7 DLKWDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGA-TYPKNKFLEDVFGDFYTEVQTFT-KRPICIAEMSSTGCICKGKPAWIT 573 DLKW V+ +D QVQLV++F D +L+ + SG YD L+ GKDA DGRQ+ +R LHE+NGDWYNW A N DF A++H VT LRS G N KFQ+SY A N+++ PFKDFY GD YVDQ+C SAYN CG TY NK ++ +Y +V F + +CIAEMS+T K WIT Sbjct: 381 DLKWSAVSDILDTKRQVQLVMEFYDSYPNLRDVKSGKYDQYLKDFGKDAKADGRQLTIRPLHELNGDWYNWDALRNGNNAEDFPGAFQHVVTTLRSTGGNFKFQISYAAKNSAESNMPFKDFYPGDSYVDQICVSAYNTCGTGTYKSNKSFSEIINTWYFQVTAFAPSKSLCIAEMSTTDQCGSDKAQWIT 571
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Match: A0A836CCT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT0_9STRA) HSP 1 Score: 197 bits (500), Expect = 1.070e-54 Identity = 95/189 (50.26%), Postives = 124/189 (65.61%), Query Frame = 1 Query: 7 DLKWDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKFLEDVFGDFYTEVQTFTK-RPICIAEMSSTGCICKGKPAWI 570 +L W ++ +DA V LVI+F+D ++L +A+G YD L G+ AA DGR I +R LHE NGDWY W A N++ DF A+KH VT LR+ GAN K+Q SY NA+ TP ++YVGD+YVDQVC SAYN CG +YP NK L ++G FY +V +F + CIAEMSSTG C+GKP W+ Sbjct: 1046 NLNWKWIVGFLDAGRNVDLVIEFVDSYSNLADVAAGKYDRFLGKFGQAAADDGRVINIRPLHEFNGDWYPWGALRQGNSMQDFLLAFKHVVTTLRATGANFKYQQSYAMKNANNDPTPLSEWYVGDDYVDQVCVSAYNLCGVSYPTNKPLASMYGSFYYQVLSFAPTKTQCIAEMSSTG-HCEGKPQWL 1233
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Match: A0A835YSW1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW1_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.300e-50 Identity = 88/189 (46.56%), Postives = 120/189 (63.49%), Query Frame = 1 Query: 10 LKWDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKFLEDVFGDFYTEVQTFT-KRPICIAEMSSTGCICKGKPAWIT 573 L W +V + +D VQLVI+FID ++L +A+G YD L+ G A DGR IY+R LHE NGDWY W F N++ FK AY+H +TVLR+ G N K+Q+SY +A+ T F DFYVGD+Y+ Q+C SAYN GA YP ++ L + G Y + ++F +P+C+AEMS+T KP WIT Sbjct: 279 LSWSWVKTFLDKGTGVQLVIEFIDNYSNLSDVAAGKYDGYLKKFGAFAKADGRLIYLRPLHEFNGDWYPWGIFREGNSLDAFKAAYRHVITVLRATGGNFKYQLSYNVKSANSNPTKFSDFYVGDDYL-QICVSAYNMAGARYPDSRSLATILGYAYAQFESFAPSKPLCLAEMSTTS-YGGDKPLWIT 465
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Match: A0A836C8I3_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I3_9STRA) HSP 1 Score: 163 bits (413), Expect = 2.560e-44 Identity = 90/211 (42.65%), Postives = 123/211 (58.29%), Query Frame = 1 Query: 7 DLKWDFVASKIDAYGQVQLVIDFIDQE---AHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMN----------------------GDWYNWRAFFGDNTVGDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCG-ATYPKNKF-LEDVFGDFYTEVQTFTKRPICIAEMSSTGCICKGK 558 +L WD++AS +D V+LV++F A+LK + G YD+ L+ G+ AAKDGR+I VR+LHE+N GDWY W AF N+ AYKHAV++LRS GAN K+Q+SY A NA TP K F+ GDEYVD+VC +AYN CG ++ P+ L + +Y ++ FT + ICI+E+SST C GK Sbjct: 182 NLDWDYIASFLDGNRAVELVMEFNSDTPFTANLKDVIGGKYDTDLKDFGRAAAKDGRRITVRLLHELNVFKYKRQGNXXXXXXXXXXXXXGDWYPWGAFTPGNSPEKLVTAYKHAVSLLRSTGANFKYQLSYNARNAGGNSTPLKAFWPGDEYVDEVCVAAYNTCGTSSNPRMTLSLTAIMNTWYKQITAFTTKKICISEISSTS-HCGGK 391
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Match: A0A835Z8N1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N1_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.470e-42 Identity = 85/195 (43.59%), Postives = 113/195 (57.95%), Query Frame = 1 Query: 1 MADLKWDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDAAKDGRQIYVRMLHEMNGDWYNWRAFFGDNTV-----GDFKNAYKHAVTVLRSMGANLKFQMSYVANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKFLEDVFGDFYTEVQTFTKRPICIAEMSSTGCICKGKPAWI 570 + DL +D+VA++++ VQLV++F LK IA+G D L A DGRQ Y+R LHE NGDWY W + D T+ DFK AYKH VT+ R+ A ++FQ Y +N KTPFK+FYVGD+YVD VC S YN G + + GDFY ++ T + +CI+EMS+T KPAWI Sbjct: 155 VTDLHFDWVATEMNRGHTVQLVLEFFGTS--LKDIAAGGSDGVLSDFANKAKTDGRQFYIRPLHEFNGDWYPW-GIYVDGTLHTDLLSDFKAAYKHIVTIFRNAKAPVQFQQGYNNSNPRDDKTPFKNFYVGDDYVDMVCFSLYNFAGIPNHSSGTFTKLAGDFYNQMTLATSKDLCISEMSTTS-YGVDKPAWI 345 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353206 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16636 ID=mRNA_16636|Name=jgi.p|Trimin1|353206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=597bp|location=Sequence derived from alignment at Contig_149:200132..201346- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCCGATCTCAAATGGGACTTTGTGGCCTCCAAGATTGACGCATATGGback to top protein sequence of jgi.p|Trimin1|353206 >Trimin1|353206|estExt_Genemark1.C_Ctg_1490022 ID=Trimin1|353206|estExt_Genemark1.C_Ctg_1490022|Name=jgi.p|Trimin1|353206|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=199bp MADLKWDFVASKIDAYGQVQLVIDFIDQEAHLKKIASGAYDSKLRAVGKDback to top mRNA from alignment at Contig_149:200132..201346- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16636 ID=mRNA_16636|Name=jgi.p|Trimin1|353206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1215bp|location=Sequence derived from alignment at Contig_149:200132..201346- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_149:200132..201346- >mRNA_16636 ID=mRNA_16636|Name=jgi.p|Trimin1|353206|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=597bp|location=Sequence derived from alignment at Contig_149:200132..201346- (Tribonema minus UTEX_B_3156 )back to top |