mRNA_16585 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130274
Unique NamemRNA_16585
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|130274 vs. uniprot
Match: A0A835Z8M2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.200e-21
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 GCTKQPYFGMEGEGARWRVAHKPEGAIDMINKRCKGGG 114
            GCTKQPYFGMEGEGARWRVAHKPEGAIDMINKRCKGGG
Sbjct:    1 GCTKQPYFGMEGEGARWRVAHKPEGAIDMINKRCKGGG 38
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130274 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z8M2_9STRA6.200e-21100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_175contigContig_175:26205..26513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130274|gw1.175.6.1
Hectar predicted targeting categoryother localisation
TranscriptId130596
TrackFilteredModels1
ProteinId130274
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130274gene_16585Tribonema minus UTEX_B_3156 geneContig_175 26205..26513 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16585_1exon_16585_1Tribonema minus UTEX_B_3156 exonContig_175 26205..26513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16585CDS_16585Tribonema minus UTEX_B_3156 CDSContig_175 26205..26513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130274Trimin1|130274|gw1.175.6.1Tribonema minus UTEX_B_3156 polypeptideContig_175 26205..26513 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16585 ID=mRNA_16585|Name=jgi.p|Trimin1|130274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=309bp|location=Sequence derived from alignment at Contig_175:26205..26513+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCTGCACCAAGCAACCTTACTTCGGCATGGAGGGGGAAGGTGCCAGATG
GCGCGTCGCCCACAAGCCGGAGGGCGCAATCGACATGATAAACAAGCGCT
GCAAGGGCGGCGGCTGCACCAAGCACCGAGTGTACGGCGTGGAGGGGGAC
CGTGCCAGATGGTGCCTCGCTCACAAGCCGGAGGCCGCAATAAACGTCAT
ATCCAAGCGCTGCGAGGGCAACGGCTGCTCCATGTTTGCTTCATTCCGCA
TGGAGGGGCAAGGTGCCAGATGGTGCCTCGCCCACAAGCTGAAGGCCGCA
ACAAACGTC
back to top

protein sequence of jgi.p|Trimin1|130274

>Trimin1|130274|gw1.175.6.1 ID=Trimin1|130274|gw1.175.6.1|Name=jgi.p|Trimin1|130274|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=103bp
GCTKQPYFGMEGEGARWRVAHKPEGAIDMINKRCKGGGCTKHRVYGVEGD
RARWCLAHKPEAAINVISKRCEGNGCSMFASFRMEGQGARWCLAHKLKAA
TNV
back to top

mRNA from alignment at Contig_175:26205..26513+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16585 ID=mRNA_16585|Name=jgi.p|Trimin1|130274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=309bp|location=Sequence derived from alignment at Contig_175:26205..26513+ (Tribonema minus UTEX_B_3156 )
GGCTGCACCAAGCAACCTTACTTCGGCATGGAGGGGGAAGGTGCCAGATG
GCGCGTCGCCCACAAGCCGGAGGGCGCAATCGACATGATAAACAAGCGCT
GCAAGGGCGGCGGCTGCACCAAGCACCGAGTGTACGGCGTGGAGGGGGAC
CGTGCCAGATGGTGCCTCGCTCACAAGCCGGAGGCCGCAATAAACGTCAT
ATCCAAGCGCTGCGAGGGCAACGGCTGCTCCATGTTTGCTTCATTCCGCA
TGGAGGGGCAAGGTGCCAGATGGTGCCTCGCCCACAAGCTGAAGGCCGCA
ACAAACGTC
back to top

Coding sequence (CDS) from alignment at Contig_175:26205..26513+

>mRNA_16585 ID=mRNA_16585|Name=jgi.p|Trimin1|130274|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=309bp|location=Sequence derived from alignment at Contig_175:26205..26513+ (Tribonema minus UTEX_B_3156 )
GGCTGCACCAAGCAACCTTACTTCGGCATGGAGGGGGAAGGTGCCAGATG
GCGCGTCGCCCACAAGCCGGAGGGCGCAATCGACATGATAAACAAGCGCT
GCAAGGGCGGCGGCTGCACCAAGCACCGAGTGTACGGCGTGGAGGGGGAC
CGTGCCAGATGGTGCCTCGCTCACAAGCCGGAGGCCGCAATAAACGTCAT
ATCCAAGCGCTGCGAGGGCAACGGCTGCTCCATGTTTGCTTCATTCCGCA
TGGAGGGGCAAGGTGCCAGATGGTGCCTCGCCCACAAGCTGAAGGCCGCA
ACAAACGTC
back to top