mRNA_16541 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Match: A0A836CGD7_9STRA (Copper transport protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD7_9STRA) HSP 1 Score: 904 bits (2337), Expect = 0.000e+0 Identity = 461/513 (89.86%), Postives = 476/513 (92.79%), Query Frame = 1 Query: 1 MDGTARRTLATTTNAGMPLPLPMAVAEACPRFAEAAERLRSAVDATGRAYANVLDQLAHGNALLESGEVPPFALFAAAASTAESLEHFHVFTHDTPAGGESHRHG--DGMLPLHSDVGLFLVMTAAEYFQLESGTRL--GHGTAPQTGLLVELPDGRRVRPQLAEGSLLVMNGEAATRWMDAGALRPHAPLHEVESLELTATARAWFGRMYFPPQAATLRGEALLPLTFGEHRQQTYEAFRSGQGHSASAVGCAPVTTSAMLQQQSHNLSAQRVLADEGSCGADEVYCWMSCMQIPAALTCSKADIVCINPTNGTLWPEDYMDSRGTPGHCYDCVPDCGASGAASSQGGAPDMPAVTSTSSFCNTVLSPTTMWMTGFQFMAGHAGSPCVVYLFPGWVLNSAVKFGIACVGSFLMGIAAAALTSVRLLLNRQFVPQQKG-KQRLWALAGYALQLVVLAVQLTLGYWCMLVAMTYQAELFIMIVLGLAFGQLFNVAYEGGKGGAAADESPNVCCC 1524 MDGTARRTLAT TNAG+PLPLP AVAEACPRFAEAAERLRSAVDATGRAYAN+LD+LAHG+A LESGEVPPFA +AAAASTAESLEHFHVFT D PAGG+S RHG D MLPLHSD+GLFLVMTAAEYF+LESG RL GHGTAPQTGLLVELPDGRRVRPQL +GSLLVMNGEAATRWMDAGALRPHAPLHEVESLELTATARAWFGRMYFPPQAATLRGEALLPLTFGE+RQQTYEAFRSGQGHSASAVGC P+TTSAMLQQQSHN+SAQRVLADEGSCG DEVYCWMSCMQIPAALTC KADIVCINPT+GTLWPEDY+DS GTPGHCYDCVPDCGA+ TSTSSFCNTVLSPTTMWMTGFQFMAGHAGSPCVVYLFPGWVLNSAVKFGIACVGSFLMGIAAAALTSVRLLLNRQFVPQQKG K LWALAGYALQLVVLAVQLTLGYWCMLVAMTYQAELFIMIVLGLAFGQLFNV YEGGKGGAAADESPNVCCC Sbjct: 1 MDGTARRTLATATNAGVPLPLPTAVAEACPRFAEAAERLRSAVDATGRAYANILDKLAHGDASLESGEVPPFASYAAAASTAESLEHFHVFTRDAPAGGDSRRHGNHDSMLPLHSDMGLFLVMTAAEYFELESGARLELGHGTAPQTGLLVELPDGRRVRPQLPQGSLLVMNGEAATRWMDAGALRPHAPLHEVESLELTATARAWFGRMYFPPQAATLRGEALLPLTFGEYRQQTYEAFRSGQGHSASAVGCTPMTTSAMLQQQSHNISAQRVLADEGSCGVDEVYCWMSCMQIPAALTCPKADIVCINPTDGTLWPEDYVDSSGTPGHCYDCVPDCGAT--------------ATSTSSFCNTVLSPTTMWMTGFQFMAGHAGSPCVVYLFPGWVLNSAVKFGIACVGSFLMGIAAAALTSVRLLLNRQFVPQQKGHKPGLWALAGYALQLVVLAVQLTLGYWCMLVAMTYQAELFIMIVLGLAFGQLFNVVYEGGKGGAAADESPNVCCC 499
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Match: A0A2J8A9L1_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A9L1_9CHLO) HSP 1 Score: 400 bits (1027), Expect = 3.540e-130 Identity = 249/536 (46.46%), Postives = 305/536 (56.90%), Query Frame = 1 Query: 4 DGTARRTLATTTNAGMPLPLPMAVAEACPRFAEAAERLRSAVDATGRAYANVLDQLAHGNALLESGEVPPFALFAAAASTAESLEHFHVFTHDTPAGGESHRHGDGMLPLHSDVGLFLVMTAAEYFQLESGTRLGHGTAPQTG-------LLVELPDGRRVRPQLAEGSLLVMNGEAATRWMDAGALRP----HAPLHEVESLELTATARAWFGRMYFPPQAATLRGE--------ALLPLTFGEHRQQTYEAFRSGQGHSASAVGCAPVTTSAMLQQQSHNLSAQRVLADEGSCGADEVYCWMSCMQIPAALTCSKADIVCINPTNGTLWPEDYMD-SRGTPGHCYDCVPDCGASGAASSQGGAPDMPAVTSTSSFCNTVLSPTTMWMTGFQFMAGHAGSPCVVYLFPGWVLNSAVKFGIACVGSFLMGIAAAALTSVRLLLNRQFVPQ------QKGKQRLWALAGYALQLVVLAVQLTLGYWCMLVAMTYQAELFIMIVLGLAFGQLFN----VAYEGGKGGAAADESPNVCC 1521 DG RRTLAT TN MP PLP + CP FA AA +LR+AV ATG AYA +LD+L +G+A + P F+ A AESLEHFH F H ML +HSD+GLFLVM+ AE F + G A G L+V+L DGR V P L +G+LLVMNGE RWM ++ P ++PLHEV S +L+ RAWFGRM+ PP AA L+ E A TF E++Q TY F G G +ASA GC+P +R L DEGSCG D+VYCWMSCM I +TCSK +I+C N NG LWPE+Y R PGHC+DC C A +PA S SSFCNT L TTMWMTGFQF G+ +PCVVYLFP WVL+SA KF AC+G+FL+G+ L VR L +V + + + ++W A+ + ++AVQ+ LGYW MLVAMTYQAELFIM+VLGLA G LF GKGG P CC Sbjct: 99 DGAVRRTLATATNNSMPQPLPADALQHCPDFAAAAFQLRAAVAATGNAYAGILDKLLYGDAACSA----PDQCFSGAVRNAESLEHFHFFEPAPSPSAAEH-----MLAMHSDIGLFLVMSPAELFDRAAAAATGDSKAAGEGKPQRAQDLVVQLADGRIVTPVLPDGALLVMNGEGLMRWMRMPSVEPLHLPYSPLHEVLSSDLSGGVRAWFGRMFMPPHAARLQVEDGSKDNAHASSRPTFAEYQQHTYTLFHDGLGQAASAAGCSPT---------------RRQLVDEGSCGNDKVYCWMSCMSITPNITCSKDEIICANIKNGLLWPENYTTPGRAMPGHCFDCTLMCPAE----------QLPA--SASSFCNTNLGATTMWMTGFQFTTGNEDAPCVVYLFPEWVLDSAGKFAGACIGTFLLGVVVGMLGWVRNRLKDGWVAEGRWEGAYRPQWKVWF--ADAVLVTIIAVQVCLGYWLMLVAMTYQAELFIMVVLGLACGHLFYRPRPTTAAVGKGGGYELNEP--CC 594
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Match: A0A150GDT7_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GDT7_GONPE) HSP 1 Score: 376 bits (965), Expect = 9.970e-120 Identity = 250/580 (43.10%), Postives = 304/580 (52.41%), Query Frame = 1 Query: 4 DGTARRTLATTTNAGMPLPLPMAVAEACPRFAEAAERLRSAVDATGRAYANVLDQLAHGNALLESGEVPPFALFAAAASTAESLEHFHVFTHD---------------TPAGGESHRHGDG-MLPLHSDVGLFLVMTAAEYFQLESGTRLGH-------------------------GTAPQTG--LLVELPDGRRVRPQLAEGSLLVMNGEAATRWMDA-------GALRPHAPLHEVESLELTATARAWFGRMYFPPQAATLR-----------------------GEAL----------------LPLTFGEHRQQTYEAFRSGQGHSASAVGCAPVTTSAMLQQQSHNLSAQRVLADEGSCGADEVYCWMSCMQIPAALTCSKADIVCINPTNGTLWPEDYMDSR-GTPGHCYDCVPDCGASGAASSQGGAPDMPAVTSTSSFCNTVLSPTTMWMTGFQFMAGHAGSPCVVYLFPGWVLNSAVKFGIACVGSFLMGIAAAALTSVRLLLNRQFVPQQKGKQ------RLWALAGYALQLVVLAVQLTLGYWCMLVAMTYQAELFIMIVLGLAFGQL 1455 DG R TLAT TN PLP CP FA AA RLR+AV A G AYA VLD +G A + P F A + AE LEHFH+FT + A ++ DG ML +HSD+GLFLVM+ AE F + G PQ L+V+L DGR V P L +G+LLVMNGE +RWM G +P++PLHEV S ++ RAWFGRM+ PP +A L+ G+A +TFGE+RQ TY F GQGH+ASAVGC+P +R+LADEGSCGA+EVYCW SCM +PA TC KA+I+C N NG LWP++Y PGHC DC C A AA++ P S SSFCNT L TTMWM+GFQF GH PCVVYLFP WVL+SA KF AC+G+FLMG+ AL R L +V Q +Q R W LA A+ + ++AVQ+ LGYW MLVAMTYQAELFIM+VLGLA G + Sbjct: 97 DGAVRHTLATATNGSSAQPLPADALRRCPDFAAAAYRLRAAVAAAGAAYAGVLDAALYGEAACAT----PATCFRDAVAGAEGLEHFHMFTPSPSSAPKRATSSLDAASAAASDASAAADGRMLAMHSDIGLFLVMSPAELFDTSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKTPQRSNDLVVQLADGRIVAPVLPDGALLVMNGEGLSRWMRVPASSSALGGSQPYSPLHEVLSSDMAGGVRAWFGRMFMPPASAVLQVTDEPVAAVAVXXXXXXXXXXXXGDAARTPHISSFATAAATVTTKMTFGEYRQHTYRMFHDGQGHAASAVGCSPT---------------RRLLADEGSCGANEVYCWHSCMPMPANATCGKAEILCQNVNNGLLWPQNYTTPGVARPGHCKDCTLICPAKTAAAADNSTVLPP---SASSFCNTNLGATTMWMSGFQFAKGHERGPCVVYLFPEWVLDSAGKFAGACIGTFLMGVLVGALGYTRGKLKDSWVAQGLWEQDYSPQWRTW-LADAAI-VSIIAVQVCLGYWLMLVAMTYQAELFIMVVLGLACGHV 652
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Match: A0A835SXX8_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SXX8_CHLIN) HSP 1 Score: 371 bits (953), Expect = 6.790e-119 Identity = 240/563 (42.63%), Postives = 303/563 (53.82%), Query Frame = 1 Query: 4 DGTARRTLATTTNAGMPLPLPMAVAEACPRFAEAAERLRSAVDATGRAYANVLDQLAHGNALLESGEVPPFALFAAAAST--------AESLEHFHVFTHDTPAGGESHRHGDGMLPLHSDVGLFLVMTAAEYFQLESGTRLGH------------GTAPQTGLLVELPDGRRVRPQLAEGSLLVMNGEAATRWM---DAGALRPHAPLHEVESLELTATARAWFGRMYFPPQ--------------------------------------------AATLRG--EALLPLTFGEHRQQTYEAFRSGQGHSASAVGCAPVTTSAMLQQQSHNLSAQRVLADEGSCGADEVYCWMSCMQIPAALTCSKADIVCINPTNGT-LWPEDYM-DSRGTPGHCYDCVPDCGASGAASSQGGAPDMPAVTSTSS---FCNTVLSPTTMWMTGFQFMAGHAGSPCVVYLFPGWVLNSAVKFGIACVGSFLMGIAAAALTSVRLLLNRQFVPQQK---GKQRLWAL-AGYALQLVVLAVQLTLGYWCMLVAMTYQAELFIMIVLGLAFGQLF 1458 DG RRTLAT+T G+P LP + CP F+ AA +LR+AV ATG AYA +LDQL + N + GE A ++AA + AESLEHFH+F P+ S + ML +HSD+GLFLVMT AE F + T G L+V+LPDGR V P L +G+LLVMNGE TRWM G ++P++P+H V S +L+ RAWFGRM+ PP A TL G + LP+TF E+RQ+TY F G+G A VGC+P A+R L DE SCGAD+V+CWMSCM IP TC K+D++C N N + LWP D++ S P HC C P C P+ PA STSS FCNT L TTMWMTGFQF AGH PCVV+LFP WVL++ KF AC+G++ MG+A AL R L +V + + G W A + ++AVQ+ LGYW ML+ MTYQAELF+M+VLGLAFG LF Sbjct: 48 DGARRRTLATSTVRGVPAALPAGPSRDCPDFSSAAAQLRAAVSATGSAYAGILDQLLYSN---DDGEGAAAAGTSSAAPSSYKDAVHSAESLEHFHLFE---PSESPS---ANAMLAMHSDIGLFLVMTPAELFSRHAATXXXXXXXXXXXXSTAMGAHYAHDLVVQLPDGRIVTPVLPDGALLVMNGEGLTRWMRQPSPGRVQPYSPMHAVLSSDLSGGVRAWFGRMFMPPDHARLQVADVGDLGDHTITNASGDEKMQHARAGVVRRSLRISTPAATTLSGLQQHPLPITFVEYRQRTYSLFHGGRGQEAPTVGCSP---------------ARRQLVDESSCGADQVFCWMSCMAIPPNSTCGKSDLICANTKNTSQLWPRDFLIPSTNNPTHCATCAPMC------------PNTPAPNSTSSASSFCNTNLGTTTMWMTGFQFAAGHHSGPCVVFLFPEWVLDTRGKFAGACIGTYFMGVAVGALGWARNELKDAWVAEGRWDLGYPSWWRTWLADATIIAIIAVQVCLGYWLMLIGMTYQAELFLMVVLGLAFGHLF 574
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Match: A0A835W0S8_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W0S8_9CHLO) HSP 1 Score: 360 bits (924), Expect = 5.330e-107 Identity = 242/605 (40.00%), Postives = 304/605 (50.25%), Query Frame = 1 Query: 4 DGTARRTLATTTNAGMPLPLPMAVAEACPRFAEAAERLRSAVDATGRAYANVLDQLAHGNALLE-SGEVPPFALFAAAAS----------------------TAESLEHFHVFTHDTPAGGESHRHGDGMLPLHSDVGLFLVMTAAEYFQ----LESGTR-----------------LGHGTAPQTGLLVELPDGRRVRPQLAEGSLLVMNGEAATRWM---DAGALRPHAPLHEVESLELTATARAWFGRMYFPPQAATLR----------------------------------------------GEAL----------LPLTFGEHRQQTYEAFRSG-QGHSASAVGCAPVTTSAMLQQQSHNLSAQRVLADEGSCGADEVYCWMSCMQIPAALTCSKADIVCINPTNGT-LWPEDYM-DSRGTPGHCYDCVPDCGASGAASSQGGAPDMPAVTSTSSFCNTVLSPTTMWMTGFQFMAGHAGSPCVVYLFPGWVLNSAVKFGIACVGSFLMGIAAAALTSVRLLLNRQFVPQQKGKQ------RLWALAGYALQLVVLAVQLTLGYWCMLVAMTYQAELFIMIVLGLAFGQLFNVAYEGGK 1482 DG R TLAT TN G+P LP +CP F+ AA +LR+AV ATG AYA +LDQL +G+A + SG A A A+ +AESLEHFH+F + S ML +HSD+GLFLVMT AE F SG+R L+V+LPDG P L +G+LLVMNGE TRWM G +RP++PLH V S +L RAWFGRM+ PP A L+ G ++ L +TF E+RQ T+ F G + ASA GC+P +R+L DE SCGAD++YCWMSCM IPA TC K+DIVC + N + LWP+D++ + P HC+DC P C P+ PA STS FCNT L TTMWMTGFQF AGH PCVV+LFP WVL+S KF AC+G+FLMG+A AL +R L +V Q + R W G A + ++AVQ+ LGYW ML+ MTYQAELF+M+VLGLA L A G + Sbjct: 13 DGAQRHTLATATNKGVPEALPAEALRSCPDFSSAATQLRAAVSATGAAYAGILDQLLYGDATADTSGTTAGAAAVTARAAGDDATSSAGTAAVPSEYRDAVKSAESLEHFHLFEPSRRSPAASATVDAAMLAMHSDIGLFLVMTPAELFPRAPAASSGSRGXXXXXXXXXXXXXXXXXXXRRTYARDLVVQLPDGSVAAPVLPDGALLVMNGEGLTRWMRQPPPGRVRPYSPLHAVLSSDLGGGVRAWFGRMFMPPHNARLQVAEDDVNSGGGGMKVTAAGDHNQQAARHSSRSADVMPRSLRAAAWSGSSISNTQQGHPHPLQMTFAEYRQLTHAQFHDGGRASEASAAGCSPT---------------RRLLVDENSCGADQIYCWMSCMAIPANATCGKSDIVCASTKNASRLWPQDFLIPATNKPTHCFDCAPTC------------PNTPAPPSTSRFCNTALGATTMWMTGFQFSAGHESGPCVVFLFPEWVLDSKGKFAGACIGTFLMGVAVGALGWLRNGLRDAWVAQGRWDDGYPYWWRTWL--GDAAIIAIIAVQVCLGYWLMLIGMTYQAELFLMVVLGLAPDLLTLAAASGSR 588
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Match: A0A250X4L7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4L7_9CHLO) HSP 1 Score: 321 bits (823), Expect = 1.050e-99 Identity = 229/563 (40.67%), Postives = 278/563 (49.38%), Query Frame = 1 Query: 4 DGTARRTLATTTNAGMPLPLPMAVAEACPRFAEAAERLRSAVDATGRAYANVLDQLAHGNALLESGEVPPFALFAAAASTAESLEHFHVFTHDTPAGGESHRHGDGMLPLHSDVGLFLVMTAAEYFQLE--------SGTRLGHGTAPQTGLLVELPDGRRVRPQLAEGSLLVMNGEAATRWMDAGALR-----PHAPLHEVESLELTATARAWFGRMYFPPQAATLRGEALLPLTFGEHRQQTYEAFRSGQGHSASAVGCAPVTTSAMLQQQSHNLSAQRVLADEGSCGADEVYCWMSCMQIPAALTCSKADIVCINPTNGTLWPEDYMDSRGTPGHCYDCVPDCGASGAASSQGGAPDMPAVT--------------------------------STSSFCNTVLSPTTMWMTGFQFMAGHAGSPCVVYLFPGWVLNSAVKFGIACVGSFLMGIAAAALTSVRLLLNRQFVPQQKGKQRLWALAGYALQLVVLAVQ----LTLGYWCMLVAMTYQAELFIMIVLGLAFGQLFNVAYEGGK------GGAAADESPNV--CC 1521 D T R TLAT TN PLPLP A A+ CP F+ +A LR +VD TGRAY+ +LD+L HG S F +A ESLEHFH+F P + L +HSD+GLFL+MTAAEYF L+ RL P++GLL+ELP+G+ VRP EGSLLVMNGE A+ WM A L P AP HE+ E ARAWFGRMY PP+ A L+ A +TF E+R+QTYEAFR G C P ++R L G+C A ++YCWMSC I L+C IVC + G LW HC C P C A+ + +P P STS FCNT ++PTTMWMTGFQF G A C+VYLF W LN+ VKF AC+G+FLMG+ AL + R+FV LA +V L +Q +TLGY ML MTYQAELFIM VLGL G Y + GA D NV CC Sbjct: 75 DQTVRLTLATATNWSKPLPLPPATADLCPLFSNSATALRQSVDITGRAYSRILDRLVHGIPATGSVNERHGDSFVSAVLRGESLEHFHLFQRRAPPSDQP------SLDMHSDMGLFLIMTAAEYFHLQYRDSRDAIQSQRLLSEARPESGLLIELPNGQVVRPVFEEGSLLVMNGEGASMWMRAEGLHASPLPPFAPPHELLVPEAEGAARAWFGRMYLPPRDAVLQHGASKGMTFNEYREQTYEAFRDGNP-------CCP--------------ESRRGLQSAGNCSAGQIYCWMSCTPI-GDLSCPN--IVCAD-NEGVLWTNQSE-------HCLTCKPQCAAA-PLTPPSPSPYPPGTVLPXXXXXXXXXXXXXXXXXAFQXXXXXXXSQQSTSDFCNTRITPTTMWMTGFQF-TGSASLSCIVYLFSEWALNTRVKFAFACIGTFLMGVVVPALGA-----GRRFVWMLHEANPAAPLATSTCMMVALVIQYMLQITLGYCIMLFVMTYQAELFIMSVLGLTCGHFIFDVYGRWERSGCTNSGALEDCQKNVDPCC 592
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Match: A0A836CGZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ6_9STRA) HSP 1 Score: 294 bits (752), Expect = 6.450e-91 Identity = 173/351 (49.29%), Postives = 209/351 (59.54%), Query Frame = 1 Query: 4 DGTARRTLATTTNAGMPLPLPMAVAEACPRFAEAAERLRSAVDATGRAYANVLDQLAHGNALLESGEVPPFAL--FAAAASTAESLEHFHVFTHDTPAGGESHRHGDGMLPLHSDVGLFLVMTAAEYFQLESGTRL-GHGTAPQTGLLVELPDGRRVRPQLAEGSLLVMNGEAATRWMDAGALRPHAPLHEVESLELTATARAWFGRMYFPPQAATLR---GEALLP----------LTFGEHRQQTYEAFRSGQGHSASAVGCAPVTTSAMLQQQSHNLSAQRVLADEGSC-GADEVYCWMSCMQIPAALTCSKADIVCINPTNGTLWPEDYMDSRGT-PGHCYDCVPDC 1002 DGTAR T+AT T G +PLP V ACP+FA A+ LR AVDA G AY VLD L + + PP A F AA AESLEHFH+F + RH MLPLH+D+GLFLVMT AEY L +G RL G +GL+VE G+R P L EG+L++M+GEAATRWM+AGA++P APLHEV SL+++ ARAWFGRMYFP A L GE L LTFG + Q EAFR G GHSASA GC+P S +L A R LAD SC A + +CWMSC IP C+ + + C NP NG WP +Y+D + PGHCYDC+ C Sbjct: 105 DGTARHTVATATVGGTLMPLPEEVTVACPKFAAASSDLREAVDAVGLAYTQVLDTLVYNGS-------PPSAASSFVTAAQQAESLEHFHMFVQEENTAS---RHNSAMLPLHTDIGLFLVMTVAEYIDLPTGDRLAGSYRLHGSGLVVEHAPGQRAAPALPEGALVIMHGEAATRWMEAGAVKPKAPLHEVVSLDISGAARAWFGRMYFPLADAKLHLQDGELLDDAIHNAVDAGGLTFGAYHQHASEAFRRGLGHSASAAGCSPSAVS-------RHLGAARELADAASCKAAGKFFCWMSCQAIPKKARCAWSKMRCRNPKNGKFWPANYIDKKTKKPGHCYDCIVQC 438
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Match: A0A250X4K9_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4K9_9CHLO) HSP 1 Score: 244 bits (624), Expect = 2.040e-70 Identity = 182/498 (36.55%), Postives = 240/498 (48.19%), Query Frame = 1 Query: 4 DGTARRTLATTTNAGMPLPLPMAVAEACPRFAEAAERLRSAVDATGRAYANVLDQLAHGNALLESGE--VPPFAL----FAAAASTAESLEHFHVFTHDTPAGGESHRHGDGMLPLHSDVGLFLVMTAAEYFQLESGTRLGHGTAPQTGLLVELPDGRRVRPQLAEGSLLVMNGEAATRWMDAGALRPHAPLHEVESLELTATARAWFGRMYFPPQAATLRGEALLPLTFGEHRQQTYEAFRSGQGHSASAVGCAPVTTSAMLQQQSHNLSAQRVLADEGSCGADEVYCWMSCMQIPAALTCSKADIVCINPTNGTLWPEDYMDSRGTPGHCYDCVPDCGASGAASSQGGAPDMPAVTSTSSFCNTVLSPTTMWMTGFQFMAGHAGSPCVVYLFPGWVLNSAVKFGIACVGSFLMGIAAAALTSVRLLLNRQFVPQQKGKQ-RLWAL-AGYALQLVVLAVQLTLGYWCMLVAMTYQAELFIMIVLGLAFGQLFNVAYE 1473 D T R T+A +TN + P+P ++ E+CP F E+A +LR VD TGRAYA VLD+L HG LE+ E P + F +A AESLEHFH+F P + L +HSD+GLFL+MTAAEYF + L + DG R+ P D G + + W TY+AF+ G+ AS GC SA+R L+D+G+CGA +VYCWM CM I + L CS+ D +C++P+ G LWP+D+ +GT HC C C GAP +P T FC+T L+P TMWMTGFQF +G + CVVYLF W L+++VKF AC+G+F +G+ AL VR ++ G Q + W + G +V QLTL Y ML MTYQAELFIM VLGLA G + Y Sbjct: 126 DSTLRNTVALSTNRSIAQPMPTSIMESCPVFTESARKLREEVDLTGRAYARVLDRLVHG---LEASEPATPRSGVMGDSFVSAVLRAESLEHFHLFQRRAPPSDQP------SLDMHSDMGLFLIMTAAEYF---------------SALDADQGDGSRLAP-------------------DQGCCQ----------------SLVW---------------------------SHTYQAFKEGKPCEASTAGCP---------------SARRALSDDGACGAGQVYCWMQCMSI-SGLGCSQNDTICVDPS-GDLWPQDFP--QGTSTHCPTCSLQCA---------GAPPLPPATG---FCDTRLTPVTMWMTGFQF-SGKSSDACVVYLFSKWTLDTSVKFAFACIGTFFLGVVVIALGVVRQFFWKRHDGLVYGSQLQNWGMIVGVTFTYMV---QLTLSYCVMLFVMTYQAELFIMSVLGLATGHFYFDIYR 502
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Match: A0A835VPE1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VPE1_CHLIN) HSP 1 Score: 238 bits (607), Expect = 1.240e-68 Identity = 160/399 (40.10%), Postives = 209/399 (52.38%), Query Frame = 1 Query: 4 DGTARRTLATTTNAGMPLPLPMAVAEACPRFAEAAERLRSAVDATGRAYANVLDQLAHGNALLESGEVPPFAL-------FAAAASTAESLEHFHVFTHDTPA---GGESHRHGDGMLPLHSDVGLFLVMTAAEYFQLESGTRLGH--GTAPQTG--LLVELPDGRRVRPQLAEGS--LLVMNGEAATRWMDAGALR--PHAPLHEVESLELTATARAWFGRMYFPPQAATLR-----------------GEAL-------------------------LPLTFGEHRQQTYEAFRSGQGHSASAVGCAPVTTSAMLQQQSHNLSAQRVLADEGSCGADEVYCWMSCMQIPAALTCSKADIVCINPTNGTLWPEDY---MDSRGTPGHCYDCVPDCGAS 1011 DG R TLAT+T A +P PLP ACP FA AA LR+AV ATG AYA VLD+L +G+ + G V ++AA AESLEHFHVF+ P+ GG + L LHSD+G+FLVMT AE F + T G P+ L+ +LPDGR VRP L EG LLVMNGE TRWM A R P++P+HEV S ++ RAWFGRM+ PP +A L+ G A +TF E+R TY+ F G+G +A A+GC+P ++RVL DEGSCGAD+V+CW SCM + L C++++++C +P WP+D+ + S PGHC +C C AS Sbjct: 92 DGATRSTLATSTAASVPQPLPADAVRACPVFAVAANSLRAAVAATGAAYAAVLDRLLYGDDACDGGAVGGDGAVQQQPRCYSAAVRAAESLEHFHVFS-PAPSKARGGSGGSTVEHTLGLHSDIGMFLVMTPAELFNTAAPTSPSSLDGRPPRRAGDLVAQLPDGRLVRPLLPEGGAVLLVMNGEGLTRWMRPAATRHVPYSPMHEVLSTDMGGGVRAWFGRMFMPPPSARLQQLPSSTTTVLTAPGGDGGXAAGDXXXXXXXXXRVAAEAGATATTRRSAMTFAEYRALTYQLFHEGRGAAAPALGCSP---------------SRRVLVDEGSCGADQVFCWHSCMNLTEDLHCNRSEMLCRDPYTQKQWPQDFPPLVASSTRPGHCKNCTLACPAS 474
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Match: A0A835Z1Z9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z9_9STRA) HSP 1 Score: 229 bits (583), Expect = 1.490e-68 Identity = 119/237 (50.21%), Postives = 146/237 (61.60%), Query Frame = 1 Query: 343 VGLFLVMTAAEYFQLESGTRLGHGTAPQTGLLVELPDGRRVRPQLAEGSLLVMNGEAATRWMDAGALRPHAPLHEVESLELTATARAWFGRMYFPPQAATLR--------GEALLP---------LTFGEHRQQTYEAFRSGQGHSASAVGCAPVTTSAMLQQQSHNLSAQRVLADEGSCGADEVYCWMSCMQIPAALTCSKADIVCINPTNGTLWPEDYMDSRGTPGHCYDCVPDC 1002 +GLFLV AA Y L +G + AP +GL+++L DG V P L +GSLLVM+GEAAT+WM AG + P AP HEV+SL+L ARAWFGRMYFP AATL EA P L+FGE+R QTY AF G GH AS GCAP+++ + A+R+L D GSC A E YCWM C IPA L C+ AD+VC NP +GT WPE+Y G P HC+DC+ C Sbjct: 1 IGLFLVTMAASYIDLATGDTMQGAAAPPSGLILQLADGTFVEPLLPQGSLLVMDGEAATQWMKAGTVAPRAPPHEVQSLQLGGAARAWFGRMYFPDAAATLARDAAGDIVSEAYAPSAAVQASRGLSFGEYRSQTYAAFHGGAGHVASTAGCAPISS-----MSGPDSGARRLLVDPGSCTAAEKYCWMGCRAIPADLVCASADMVCRNPIDGTFWPENYTTPTG-PTHCFDCIIQC 231 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180232 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16541 ID=mRNA_16541|Name=jgi.p|Trimin1|180232|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1527bp|location=Sequence derived from alignment at Contig_211:129090..131481+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACGGCACTGCACGCCGCACACTTGCCACCACCACCAACGCCGGCATback to top protein sequence of jgi.p|Trimin1|180232 >Trimin1|180232|e_gw1.211.33.1 ID=Trimin1|180232|e_gw1.211.33.1|Name=jgi.p|Trimin1|180232|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=509bp MDGTARRTLATTTNAGMPLPLPMAVAEACPRFAEAAERLRSAVDATGRAYback to top mRNA from alignment at Contig_211:129090..131481+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16541 ID=mRNA_16541|Name=jgi.p|Trimin1|180232|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2392bp|location=Sequence derived from alignment at Contig_211:129090..131481+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_211:129090..131481+ >mRNA_16541 ID=mRNA_16541|Name=jgi.p|Trimin1|180232|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1527bp|location=Sequence derived from alignment at Contig_211:129090..131481+ (Tribonema minus UTEX_B_3156 )back to top |