mRNA_16515 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|353465
Unique Name	mRNA_16515
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|353465 vs. uniprot
Match: A0A835Z891_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z891_9STRA)

HSP 1 Score: 475 bits (1223), Expect = 1.930e-166
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 1

Query:    1 MNFLRIRQLEALWRRTQARIVAADADQRRWAEQRLLTVVQLLREFENNLRGLRVEVAELREWASSGGGGDVQVLEGTMAGSAEGGGYPGDGGREVGISGDQDERWGDGASPLDAQAGGYGGVDGEPQVEDDGPEGSYSIEVHAAAALAPRANALTALMAEMRGEDDXXXXXSGRISXXXXXXXXXXXXXXXXXXADQEQAFDGREGGDGGYDXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGPDSEPQALHSGGGGGDSGSGEMAPSHSQQRLHSSASQRXXXXXXXXXXXXXLSAASLHGKAAQHGGSRAADDGEPEGDSEETDETAADST 996
            MNFLRIRQLEALWRRTQARIVAADADQRRWAEQRLLTVVQLLREFENNLRGLRVEVAELREWASSGGGGDVQVLEGTMAGSAEGGGYPGDGGREVGISGDQDERWGDGASPLDAQAGGYGGVDGEPQVEDDGPEGSYSIEVHAAAALAPRANALTALMAEMRGEDDXXXXXSGRISXXXXXXXXXXXXXXXXXXADQEQAFDGREGGDGGYDXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGPDSEPQALHSGGGGGDSGSGEMAPSHSQQRLHSSASQRXXXXXXXXXXXXXLSAASLHGKAAQHGGSRAADDGEPEGDSEETDETAADST
Sbjct:    1 MNFLRIRQLEALWRRTQARIVAADADQRRWAEQRLLTVVQLLREFENNLRGLRVEVAELREWASSGGGGDVQVLEGTMAGSAEGGGYPGDGGREVGISGDQDERWGDGASPLDAQAGGYGGVDGEPQVEDDGPEGSYSIEVHAAAALAPRANALTALMAEMRGEDDXXXXXSGRISXXXXXXXXXXXXXXXXXXADQEQAFDGREGGDGGYDXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGPDSEPQALHSGGGGGDSGSGEMAPSHSQQRLHSSASQRXXXXXXXXXXXXXLSAASLHGKAAQHGGSRAADDGEPEGDSEETDETAADST 332

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353465 vs. uniprot

BLAST of jgi.p|Trimin1|353465 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z891_9STRA	1.930e-166	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_164	contig	Contig_164:324887..327017 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|353465\|estExt_Genemark1.C_Ctg_1640030
Hectar predicted targeting category	other localisation
TranscriptId	353787
Track	FilteredModels1
ProteinId	353465

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353465	gene_16515	Tribonema minus UTEX_B_3156	gene	Contig_164 324887..327017 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_16515_1	exon_16515_1	Tribonema minus UTEX_B_3156	exon	Contig_164 324887..325177 +
exon_16515_2	exon_16515_2	Tribonema minus UTEX_B_3156	exon	Contig_164 325834..326286 +
exon_16515_3	exon_16515_3	Tribonema minus UTEX_B_3156	exon	Contig_164 326763..327017 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_16515	CDS_16515	Tribonema minus UTEX_B_3156	CDS	Contig_164 324887..325177 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353465	Trimin1\|353465\|estExt_Genemark1.C_Ctg_1640030	Tribonema minus UTEX_B_3156	polypeptide	Contig_164 324887..327017 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_164:324887..327017+
coding sequence from alignment at Contig_164:324887..327017+

spliced messenger RNA

>mRNA_16515 ID=mRNA_16515|Name=jgi.p|Trimin1|353465|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=999bp|location=Sequence derived from alignment at Contig_164:324887..327017+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTCCTGCGCATTCGACAGCTGGAGGCGCTGTGGCGGCGGACGCA
GGCGCGGATCGTCGCCGCAGACGCAGACCAGCGCCGCTGGGCCGAGCAGC
GCCTGCTCACCGTCGTTCAGCTGCTGCGCGAGTTTGAGAACAACCTGCGT
GGGCTGCGCGTGGAGGTGGCGGAGCTGCGCGAGTGGGCGAGCTCGGGGGG
GGGCGGGGACGTGCAGGTGCTGGAGGGGACGATGGCGGGGAGTGCGGAGG
GCGGGGGGTACCCCGGGGACGGCGGAAGAGAGGTGGGCATTAGCGGCGAT
CAGGATGAGCGCTGGGGCGATGGCGCGTCACCGCTTGACGCACAAGCGGG
AGGCTACGGAGGCGTAGACGGCGAACCGCAAGTTGAAGATGATGGGCCGG
AGGGCAGTTACAGCATTGAAGTACACGCCGCCGCAGCGCTCGCGCCGCGC
GCCAACGCGCTGACCGCGCTGATGGCCGAAATGCGCGGCGAAGACGACGG
CGACGATGGCGAGAGTGGCAGAATCAGTGGCGAATCCAACGGCGTAACCG
ATGGCGAAATTGGCGGCGAAATAGATGCCCAAGCCGACCAAGAACAGGCT
TTTGACGGCAGAGAAGGTGGAGATGGTGGCTATGACGATGGCGGCGAGGA
GCAGGGCGGTGACGATGGAGGCGGCTATGAAGGCGACGGTGGCGCTGATG
AAGGGGGGCCTGAGGAGGAAGGGGGCCCTGACTCTGAACCACAGGCGCTC
CACAGCGGCGGCGGCGGCGGCGACAGCGGCAGCGGCGAAATGGCACCGTC
GCACAGCCAGCAACGCCTGCACTCCTCCGCATCGCAGCGCAGCACCAGCG
GCAGCAGCGGCGCAGCACCGGCTGGCTCATTGTCGGCAGCGTCGCTGCAC
GGCAAGGCGGCGCAGCACGGCGGTTCGCGCGCCGCCGACGATGGTGAGCC
GGAGGGCGACTCCGAGGAGACGGACGAGACGGCGGCGGACAGCACTTGA

protein sequence of jgi.p|Trimin1|353465

>Trimin1|353465|estExt_Genemark1.C_Ctg_1640030 ID=Trimin1|353465|estExt_Genemark1.C_Ctg_1640030|Name=jgi.p|Trimin1|353465|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=333bp
MNFLRIRQLEALWRRTQARIVAADADQRRWAEQRLLTVVQLLREFENNLR
GLRVEVAELREWASSGGGGDVQVLEGTMAGSAEGGGYPGDGGREVGISGD
QDERWGDGASPLDAQAGGYGGVDGEPQVEDDGPEGSYSIEVHAAAALAPR
ANALTALMAEMRGEDDGDDGESGRISGESNGVTDGEIGGEIDAQADQEQA
FDGREGGDGGYDDGGEEQGGDDGGGYEGDGGADEGGPEEEGGPDSEPQAL
HSGGGGGDSGSGEMAPSHSQQRLHSSASQRSTSGSSGAAPAGSLSAASLH
GKAAQHGGSRAADDGEPEGDSEETDETAADST*

mRNA from alignment at Contig_164:324887..327017+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_16515 ID=mRNA_16515|Name=jgi.p|Trimin1|353465|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2131bp|location=Sequence derived from alignment at Contig_164:324887..327017+ (Tribonema minus UTEX_B_3156 )
ATGAATTTCCTGCGCATTCGACAGCTGGAGGCGCTGTGGCGGCGGACGCA
GGCGCGGATCGTCGCCGCAGACGCAGACCAGCGCCGCTGGGCCGAGCAGC
GCCTGCTCACCGTCGTTCAGCTGCTGCGCGAGTTTGAGAACAACCTGCGT
GGGCTGCGCGTGGAGGTGGCGGAGCTGCGCGAGTGGGCGAGCTCGGGGGG
GGGCGGGGACGTGCAGGTGCTGGAGGGGACGATGGCGGGGAGTGCGGAGG
GCGGGGGGTACCCCGGGGACGGCGGAAGAGAGGTGGGCATTGTACGCTAG
CGCTAAGTTGAAGTTGAAAGCATGGTGCGGTGTACTGTGAGTTGCGTTGC
GGGTCTCACTTTGAAGAAGAGGTAACGTCGCTGCTTGTTATGAGGGGGGG
GGGCGTGGTGCTGGAGGGGACGATGGGGGGGTTGCGGGCGGGGGGGGGGG
GGGGGGGGGGGGGTTGGGGGTGGCCCCAGGTAGGCGGAAGAGAGGTGGGC
GTTGTGGTGGCAGGGTTGGGTAGCTTTGAGCTGCGCGCACTGCACGCGGC
AGTGTGAATTCTGTTGCGGATCTAGAGTTGGGAGAGAAAGAAAGTGGTAT
AGCCGCTTTTGATGGGGCGGGACGTGCAGGGGCTTGAGGGGACGAGGTGC
GGGGGGTGGGAGGGCGGGGGCGGGGGGTGGGGCTTGCCCCGGGGAAGGCG
AAAGCGAGGAGGTGGGTGTTGTAGAGTAGCTTCAAGTTGTAGTTGAAAAC
ATCGTGCGGTGCATTGTGAATTGCGTTACATATCTCATTTTGAGAAAGAG
GCAACGTCACAGCTTGGTGTGAAGGGGGGGGCGTGGTGCTGGAGGGGGCG
ATGACCGCAATACAATCAAGATGACATGGCACGTCACCTAAGTTCGACTT
TATGCACGTCACGCCTGCCGTGTCTGTTGGTCTTCCACACCGCGCAGAGC
GGCGATCAGGATGAGCGCTGGGGCGATGGCGCGTCACCGCTTGACGCACA
AGCGGGAGGCTACGGAGGCGTAGACGGCGAACCGCAAGTTGAAGATGATG
GGCCGGAGGGCAGTTACAGCATTGAAGTACACGCCGCCGCAGCGCTCGCG
CCGCGCGCCAACGCGCTGACCGCGCTGATGGCCGAAATGCGCGGCGAAGA
CGACGGCGACGATGGCGAGAGTGGCAGAATCAGTGGCGAATCCAACGGCG
TAACCGATGGCGAAATTGGCGGCGAAATAGATGCCCAAGCCGACCAAGAA
CAGGCTTTTGACGGCAGAGAAGGTGGAGATGGTGGCTATGACGATGGCGG
CGAGGAGCAGGGCGGTGACGATGGAGGCGGCTATGAAGGCGACGGTGGCG
CTGATGAAGGGGGGCCTGAGGAGGAAGGGGGCCCTGACTCTGAACCACAG
GTGCGTGACTTCGACTCTAGAACAACGGTTTCTGGGCACTGGCAAGCTGA
AAGCACAGCAGTTGGGAAGGCTGCTGGACTCAACTGGCTCTTGAGATTTG
GGGGCACATAGAACGCATTTGGCAGGCAGGTGTGAGGCACTGCCCCGCCA
GCAACGCTCTGTCGATGATGCTCAACCAATGAAGCCTCAGTTAGCAGCGT
TCAGCCAGCACACGCTGCGCCCGCGCTCCTCTTTCACCATAACGCCACCA
GCATAGCGCATGTTGCAGTGTGGAAAACAGGGAGTGGATGACATTTTTCC
CGGGGACCTTTGCGGCCAACACTGCTTCCAATGGGAACCGCCGCTTGCGC
TGCTTGATAGCGGCGTTGCCTGCCTCCACCAACCACCAAGTAGCATGCGA
CTTGCCAAGCGACTTGAAGTTGTGGCGCCTGCGTTGGACCGACACTGACT
GCTGAGCGTTGCCACTGCACCCGCAGGCGCTCCACAGCGGCGGCGGCGGC
GGCGACAGCGGCAGCGGCGAAATGGCACCGTCGCACAGCCAGCAACGCCT
GCACTCCTCCGCATCGCAGCGCAGCACCAGCGGCAGCAGCGGCGCAGCAC
CGGCTGGCTCATTGTCGGCAGCGTCGCTGCACGGCAAGGCGGCGCAGCAC
GGCGGTTCGCGCGCCGCCGACGATGGTGAGCCGGAGGGCGACTCCGAGGA
GACGGACGAGACGGCGGCGGACAGCACTTGA

Coding sequence (CDS) from alignment at Contig_164:324887..327017+

>mRNA_16515 ID=mRNA_16515|Name=jgi.p|Trimin1|353465|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=999bp|location=Sequence derived from alignment at Contig_164:324887..327017+ (Tribonema minus UTEX_B_3156 )
ATGAATTTCCTGCGCATTCGACAGCTGGAGGCGCTGTGGCGGCGGACGCA
GGCGCGGATCGTCGCCGCAGACGCAGACCAGCGCCGCTGGGCCGAGCAGC
GCCTGCTCACCGTCGTTCAGCTGCTGCGCGAGTTTGAGAACAACCTGCGT
GGGCTGCGCGTGGAGGTGGCGGAGCTGCGCGAGTGGGCGAGCTCGGGGGG
GGGCGGGGACGTGCAGGTGCTGGAGGGGACGATGGCGGGGAGTGCGGAGG
GCGGGGGGTACCCCGGGGACGGCGGAAGAGAGGTGGGCATTAGCGGCGAT
CAGGATGAGCGCTGGGGCGATGGCGCGTCACCGCTTGACGCACAAGCGGG
AGGCTACGGAGGCGTAGACGGCGAACCGCAAGTTGAAGATGATGGGCCGG
AGGGCAGTTACAGCATTGAAGTACACGCCGCCGCAGCGCTCGCGCCGCGC
GCCAACGCGCTGACCGCGCTGATGGCCGAAATGCGCGGCGAAGACGACGG
CGACGATGGCGAGAGTGGCAGAATCAGTGGCGAATCCAACGGCGTAACCG
ATGGCGAAATTGGCGGCGAAATAGATGCCCAAGCCGACCAAGAACAGGCT
TTTGACGGCAGAGAAGGTGGAGATGGTGGCTATGACGATGGCGGCGAGGA
GCAGGGCGGTGACGATGGAGGCGGCTATGAAGGCGACGGTGGCGCTGATG
AAGGGGGGCCTGAGGAGGAAGGGGGCCCTGACTCTGAACCACAGGCGCTC
CACAGCGGCGGCGGCGGCGGCGACAGCGGCAGCGGCGAAATGGCACCGTC
GCACAGCCAGCAACGCCTGCACTCCTCCGCATCGCAGCGCAGCACCAGCG
GCAGCAGCGGCGCAGCACCGGCTGGCTCATTGTCGGCAGCGTCGCTGCAC
GGCAAGGCGGCGCAGCACGGCGGTTCGCGCGCCGCCGACGATGGTGAGCC
GGAGGGCGACTCCGAGGAGACGGACGAGACGGCGGCGGACAGCACTTGA