mRNA_16491 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144662
Unique NamemRNA_16491
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|144662 vs. uniprot
Match: A0A835Z9R5_9STRA (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R5_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.720e-43
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 AGHAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 186
            AGHAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW
Sbjct:    1 AGHAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 62
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BLAST of jgi.p|Trimin1|144662 vs. uniprot
Match: A0A835Z1F0_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F0_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.590e-36
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 AGHAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 186
            AGHAYTVLQAVETSHGHLL+QLRNPWG+GEW+GDWSD SGML D++CKEL HVID  DGTFW
Sbjct:    1 AGHAYTVLQAVETSHGHLLMQLRNPWGRGEWRGDWSDASGMLNDDICKELSHVIDAEDGTFW 62
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BLAST of jgi.p|Trimin1|144662 vs. uniprot
Match: A0A835ZFZ2_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFZ2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.740e-32
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    4 GHAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 186
            GHAYTVLQAVETS+GHLL+QLRNPWG+GE  GDWSD SGMLTDE+CKELKHVIDD DGTFW
Sbjct:  183 GHAYTVLQAVETSYGHLLVQLRNPWGEGECTGDWSDASGMLTDEICKELKHVIDDEDGTFW 243
[Close]
BLAST of jgi.p|Trimin1|144662 vs. uniprot
Match: A0A835ZBB9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.300e-22
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   34 ETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 186
            E+ H  L   LRNPWG+GEW+GDWSD SGMLTDE+CKELKHVIDD DGTFW
Sbjct:  240 ESVHAFLSSALRNPWGRGEWRGDWSDASGMLTDEICKELKHVIDDEDGTFW 290
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BLAST of jgi.p|Trimin1|144662 vs. uniprot
Match: A0A835YKV9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKV9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.690e-21
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    7 HAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 186
            HAYT+L+A ET HGH LIQLRNPWG+ E+ GDWSD SGML+ E+ KEL HVI + DGTFW
Sbjct:  306 HAYTILRAFETKHGHQLIQLRNPWGQREFTGDWSDTSGMLSKELLKELDHVIAE-DGTFW 364
[Close]
BLAST of jgi.p|Trimin1|144662 vs. uniprot
Match: A0A835Z8S4_9STRA (Calpain catalytic domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.710e-20
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 AGHAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 186
            AGHAYT+L+A ET HGH LIQLRNPWG+ E+ G+WSD SGML   + +EL+H I + DGTFW
Sbjct:  302 AGHAYTILKAQETKHGHQLIQLRNPWGRHEFTGNWSDNSGMLNKGLLEELEHTIAE-DGTFW 362
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BLAST of jgi.p|Trimin1|144662 vs. uniprot
Match: F2TVF2_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVF2_SALR5)

HSP 1 Score: 77.8 bits (190), Expect = 2.560e-15
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   19 VLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 186
            +L A +TS GH L+ LRNPWG+ EWKGDWSD S + TD++ KE+    +D DG FW
Sbjct:    1 MLSAKQTSKGHRLVCLRNPWGEFEWKGDWSDNSSLWTDDIVKEVGATFNDKDGLFW 56
[Close]
BLAST of jgi.p|Trimin1|144662 vs. uniprot
Match: A0A8A3PCU8_9HELO (Calpain catalytic domain-containing protein n=1 Tax=Monilinia vaccinii-corymbosi TaxID=61207 RepID=A0A8A3PCU8_9HELO)

HSP 1 Score: 77.0 bits (188), Expect = 5.400e-15
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    4 GHAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 186
            GHAY++L+AVE   G  L+ LRNPWG+GEWKG WSD S   T E  K+L+H   D DG+FW
Sbjct:   67 GHAYSILRAVEID-GQRLVLLRNPWGRGEWKGAWSDGSKEWTPEWMKKLEHTFGD-DGSFW 125
[Close]
BLAST of jgi.p|Trimin1|144662 vs. uniprot
Match: A0A4U6X396_9PEZI (Calpain-8 n=4 Tax=Colletotrichum destructivum species complex TaxID=2707350 RepID=A0A4U6X396_9PEZI)

HSP 1 Score: 75.9 bits (185), Expect = 1.380e-14
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    7 HAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 186
            HAY+V++AVE   GH L+ L+NPWGKGEWKG WSD S   T E  ++L+H   D DG FW
Sbjct:  385 HAYSVMKAVEMD-GHRLVLLKNPWGKGEWKGAWSDGSKEWTSEWLQKLQHTFGD-DGAFW 442
[Close]
BLAST of jgi.p|Trimin1|144662 vs. uniprot
Match: E3QBR6_COLGM (Calpain family cysteine protease n=1 Tax=Colletotrichum graminicola (strain M1.001 / M2 / FGSC 10212) TaxID=645133 RepID=E3QBR6_COLGM)

HSP 1 Score: 75.5 bits (184), Expect = 1.890e-14
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    7 HAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKELKHVIDDADGTFW 186
            HAY+V++AVE   GH L+ L+NPWGKGEWKG WSD S   T E  ++L+H   D DG FW
Sbjct:  344 HAYSVMKAVEMD-GHRLVLLKNPWGKGEWKGAWSDGSKEWTPEWLQKLQHTFGD-DGVFW 401
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144662 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9R5_9STRA1.720e-43100.00Calpain catalytic domain-containing protein (Fragm... [more]
A0A835Z1F0_9STRA1.590e-3683.87Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835ZFZ2_9STRA1.740e-3286.89Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835ZBB9_9STRA1.300e-2276.47Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835YKV9_9STRA1.690e-2170.00Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835Z8S4_9STRA1.710e-2064.52Calpain catalytic domain-containing protein n=2 Ta... [more]
F2TVF2_SALR52.560e-1555.36Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A8A3PCU8_9HELO5.400e-1557.38Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A4U6X396_9PEZI1.380e-1456.67Calpain-8 n=4 Tax=Colletotrichum destructivum spec... [more]
E3QBR6_COLGM1.890e-1456.67Calpain family cysteine protease n=1 Tax=Colletotr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_164contigContig_164:121301..121486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144662|gw1.164.46.1
BRITEko00000,ko01000,ko03036
KEGG koko:K05302
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0006950,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018026,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0030154,GO:0031323,GO:0031326,GO:0031347,GO:0031974,GO:0031981,GO:0032088,GO:0032101,GO:0032259,GO:0032268,GO:0032501,GO:0032502,GO:0033554,GO:0034248,GO:0034968,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043433,GO:0043555,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048583,GO:0048863,GO:0048869,GO:0050727,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051090,GO:0051171,GO:0051246,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0098727,GO:0140096,GO:1901564,GO:1903506,GO:1990497,GO:2000112,GO:2000765,GO:2001141
Preferred nameSETD6
DescriptionSET domain containing 6
COG categoryO
Max annot lvl33154|Opisthokonta
EggNOG OGsKOG0045@1|root,KOG1338@1|root,KOG0045@2759|Eukaryota,KOG1338@2759|Eukaryota,38CA9@33154|Opisthokonta
Evalue4.76e-16
Seed ortholog81824.XP_001748684.1
Hectar predicted targeting categoryother localisation
TranscriptId144984
TrackFilteredModels1
ProteinId144662
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144662gene_16491Tribonema minus UTEX_B_3156 geneContig_164 121301..121486 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16491_1exon_16491_1Tribonema minus UTEX_B_3156 exonContig_164 121301..121486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16491CDS_16491Tribonema minus UTEX_B_3156 CDSContig_164 121301..121486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144662Trimin1|144662|gw1.164.46.1Tribonema minus UTEX_B_3156 polypeptideContig_164 121301..121486 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16491 ID=mRNA_16491|Name=jgi.p|Trimin1|144662|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=186bp|location=Sequence derived from alignment at Contig_164:121301..121486+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGGTCATGCATACACCGTTCTGCAGGCTGTGGAGACATCCCACGGCCA
TCTGTTGATTCAGCTGAGGAACCCCTGGGGGAAGGGGGAGTGGAAGGGGG
ACTGGAGCGATGAGTCTGGCATGCTCACTGACGAAATGTGCAAGGAGCTG
AAGCATGTCATCGATGATGCGGATGGGACTTTCTGG
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protein sequence of jgi.p|Trimin1|144662

>Trimin1|144662|gw1.164.46.1 ID=Trimin1|144662|gw1.164.46.1|Name=jgi.p|Trimin1|144662|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=62bp
AGHAYTVLQAVETSHGHLLIQLRNPWGKGEWKGDWSDESGMLTDEMCKEL
KHVIDDADGTFW
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mRNA from alignment at Contig_164:121301..121486+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16491 ID=mRNA_16491|Name=jgi.p|Trimin1|144662|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=186bp|location=Sequence derived from alignment at Contig_164:121301..121486+ (Tribonema minus UTEX_B_3156 )
GCAGGTCATGCATACACCGTTCTGCAGGCTGTGGAGACATCCCACGGCCA
TCTGTTGATTCAGCTGAGGAACCCCTGGGGGAAGGGGGAGTGGAAGGGGG
ACTGGAGCGATGAGTCTGGCATGCTCACTGACGAAATGTGCAAGGAGCTG
AAGCATGTCATCGATGATGCGGATGGGACTTTCTGG
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Coding sequence (CDS) from alignment at Contig_164:121301..121486+

>mRNA_16491 ID=mRNA_16491|Name=jgi.p|Trimin1|144662|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=186bp|location=Sequence derived from alignment at Contig_164:121301..121486+ (Tribonema minus UTEX_B_3156 )
GCAGGTCATGCATACACCGTTCTGCAGGCTGTGGAGACATCCCACGGCCA
TCTGTTGATTCAGCTGAGGAACCCCTGGGGGAAGGGGGAGTGGAAGGGGG
ACTGGAGCGATGAGTCTGGCATGCTCACTGACGAAATGTGCAAGGAGCTG
AAGCATGTCATCGATGATGCGGATGGGACTTTCTGG
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