mRNA_16445 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353937
Unique NamemRNA_16445
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353937 vs. uniprot
Match: A0A836CHX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX3_9STRA)

HSP 1 Score: 431 bits (1107), Expect = 1.730e-150
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 2 
Query:  173 MSLAWLALALATALASGYVAQTALPAAPRGSADAAQQQQAWVPSSEDIAAAGAAHRHHNEKQAVLPPLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQYLRLGGGGXXGRXXXXXXRRXXXXXXXXXXXXXXXXXXXXAGARLAAVPVYTEEIEDCAVNGRWQVTYGDDGAQVVDYVPR 922
            MSLAWLALALATALASGYVAQTALPAAPRGSADAAQQQQAWVPSSEDIAAAGAAHRHHNEKQAVLPPLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQYLRLGGGGXXGRXXXXXXRRXXXXXXXXXXXXXXXXXXXXAGARLAAVPVYTEEIEDCAVNGRWQVTYGDDGAQVVDYVPR
Sbjct:    1 MSLAWLALALATALASGYVAQTALPAAPRGSADAAQQQQAWVPSSEDIAAAGAAHRHHNEKQAVLPPLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQYLRLGGGGXXGRXXXXXXRRXXXXXXXXXXXXXXXXXXXXAGARLAAVPVYTEEIEDCAVNGRWQVTYGDDGAQVVDYVPR 250
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BLAST of jgi.p|Trimin1|353937 vs. uniprot
Match: A0A836CM36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM36_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.650e-45
Identity = 96/195 (49.23%), Postives = 114/195 (58.46%), Query Frame = 2 
Query:  365 LPPLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQYLRLGGG--------GXXGRXXXXXXRRXXXXXXXXXXXXXXXXXXXXAGARLAAVPVYTEEIEDCAVNGRWQVTYGDDGAQV-VDYVPR 922
            LPPLRI AN +P +       R +  R+ S+YQNAA V+R     EP+A++A AEF+DW  RT+ARNLEGHAFEFD RQWQT++AKWW RALEADE A+LEFA QY R+  G        G                                AG  LA V V TE IEDCAVNGRWQ++Y DDG Q  V+Y PR
Sbjct:    4 LPPLRIQANFAPIAP------RTLLSRDSSSYQNAAQVER---SLEPIASLAYAEFRDWTQRTMARNLEGHAFEFDRRQWQTAIAKWWQRALEADEAAKLEFAAQYNRIVAGRGGDAFDTGAAAEEEWGNIYFDCSSCLGGGAGGVFGGGDEFAGMTLAPVRVRTE-IEDCAVNGRWQLSYDDDGMQANVEYRPR 188
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BLAST of jgi.p|Trimin1|353937 vs. uniprot
Match: D7G502_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G502_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-11
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = 2 
Query:  371 PLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQY 682
            PLRI  N  P+    P+        +  TY    T +  ++     AAMA  EF D++ RT+ RNL G  F+FDTRQW +S+ KWW RA+E D  A+ +  R Y
Sbjct:   84 PLRITPNFQPQEKRRPK----FNVDKDVTYGAFLTEESFDI-----AAMAWEEFSDFLRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLY 178
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353937 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CHX3_9STRA1.730e-150100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CM36_9STRA3.650e-4549.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G502_ECTSI1.110e-1139.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_197contigContig_197:244518..246369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353937|estExt_Genemark1.C_Ctg_1970027
Hectar predicted targeting categorysignal peptide
TranscriptId354259
TrackFilteredModels1
ProteinId353937
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353937gene_16445Tribonema minus UTEX_B_3156 geneContig_197 244518..246369 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16445_1exon_16445_1Tribonema minus UTEX_B_3156 exonContig_197 244518..244984 +
exon_16445_2exon_16445_2Tribonema minus UTEX_B_3156 exonContig_197 245826..246092 +
exon_16445_3exon_16445_3Tribonema minus UTEX_B_3156 exonContig_197 246179..246369 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_16445UTR5_16445Tribonema minus UTEX_B_3156 five_prime_UTRContig_197 244518..244689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16445CDS_16445Tribonema minus UTEX_B_3156 CDSContig_197 244690..244984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353937Trimin1|353937|estExt_Genemark1.C_Ctg_1970027Tribonema minus UTEX_B_3156 polypeptideContig_197 244690..246369 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16445 ID=mRNA_16445|Name=jgi.p|Trimin1|353937|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=925bp|location=Sequence derived from alignment at Contig_197:244518..246369+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACGTGCCGACCAAAACAGCTGCAGATAGCGAGCTGCCAGTGGCAGATAT
ACACTCACAGCAGTGCCAGCGGAAAGGCGTGCCAGGAGGGCACAGCAATC
TCTGTGGGGGGCAGTTTGGTCAAAGGGTCTGCTTCAAGTTTTCGGCAGGG
AAGAAACGCAGGTATCGCAGCGATGTCGCTGGCGTGGCTGGCGCTAGCGC
TAGCCACTGCCCTCGCATCGGGCTACGTGGCACAGACAGCTCTGCCTGCC
GCACCGAGAGGGTCGGCTGACGCGGCGCAGCAGCAGCAGGCTTGGGTACC
CAGTAGCGAGGATATTGCAGCAGCAGGAGCGGCGCACCGACATCATAACG
AGAAGCAGGCCGTGCTGCCCCCCTTGCGCATCATGGCGAACTTGAGTCCT
AGGAGCAGTGGCGGGCCTCGGGGCATGCGAAACATGCAGGAGCGGGAGTT
CTCAACATACCAAAATGCCGCCACCGTCGACCGCCTCAACCTCCACTTCG
AGCCGATGGCCGCGATGGCGTGCGCCGAGTTCAAGGACTGGGTCGCGCGC
ACGCTCGCGCGCAACCTTGAGGGCCACGCCTTCGAGTTCGACACGCGCCA
GTGGCAGACGAGCGTCGCCAAGTGGTGGGGGCGCGCGCTGGAGGCGGACG
AGACGGCGCGCCTCGAGTTTGCGCGCCAGTACCTGCGGCTGGGGGGGGGG
GGCGGCGGCGGCAGGGGCGGCGCAGCCGGCGGAAGGCGCGGAGCTCCAGG
GGGGCGGGGGCGGGGGGCAGCGGGGGGGGGGCAAGGGGGGGAAGGGGGGG
CGGGCGCGCGGCTCGCCGCCGTCCCCGTGTACACGGAGGAGATCGAGGAC
TGCGCGGTGAACGGGCGGTGGCAGGTGACGTACGGGGATGACGGCGCGCA
GGTGGTGGACTACGTGCCGCGATAG
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protein sequence of jgi.p|Trimin1|353937

>Trimin1|353937|estExt_Genemark1.C_Ctg_1970027 ID=Trimin1|353937|estExt_Genemark1.C_Ctg_1970027|Name=jgi.p|Trimin1|353937|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=251bp
MSLAWLALALATALASGYVAQTALPAAPRGSADAAQQQQAWVPSSEDIAA
AGAAHRHHNEKQAVLPPLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAA
TVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAK
WWGRALEADETARLEFARQYLRLGGGGGGGRGGAAGGRRGAPGGRGRGAA
GGGQGGEGGAGARLAAVPVYTEEIEDCAVNGRWQVTYGDDGAQVVDYVPR
*
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mRNA from alignment at Contig_197:244518..246369+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16445 ID=mRNA_16445|Name=jgi.p|Trimin1|353937|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1852bp|location=Sequence derived from alignment at Contig_197:244518..246369+ (Tribonema minus UTEX_B_3156 )
CACGTGCCGACCAAAACAGCTGCAGATAGCGAGCTGCCAGTGGCAGATAT
ACACTCACAGCAGTGCCAGCGGAAAGGCGTGCCAGGAGGGCACAGCAATC
TCTGTGGGGGGCAGTTTGGTCAAAGGGTCTGCTTCAAGTTTTCGGCAGGG
AAGAAACGCAGGTATCGCAGCGATGTCGCTGGCGTGGCTGGCGCTAGCGC
TAGCCACTGCCCTCGCATCGGGCTACGTGGCACAGACAGCTCTGCCTGCC
GCACCGAGAGGGTCGGCTGACGCGGCGCAGCAGCAGCAGGCTTGGGTACC
CAGTAGCGAGGATATTGCAGCAGCAGGAGCGGCGCACCGACATCATAACG
AGAAGCAGGCCGTGCTGCCCCCCTTGCGCATCATGGCGAACTTGAGTCCT
AGGAGCAGTGGCGGGCCTCGGGGCATGCGAAACATGCAGGAGCGGGAGTT
CTCAACATACCAAAATGGTGAGTTTGTAGCACCAAATCTTGCGCTGTGCA
TCACGCTTCTGCCCCATCGGTACCTGGTCTCGGTCAGCTAAGGTCATTTG
TAAGTCTGTTTCGTTTGCTGGCTTTCTTTTGCTTGCGGGCTGGAGTGTGA
ATTTGTGTCAAGTAGACAAGCGCAGCAAAGTAGAATCACCTACAGGCAAA
GCAAACATTTAAACTATGGCTTTATGGCTTGTCTACGAGCCTGTCGCAGC
ATGAACTCTACTTGCCACTTCTTATGCACGTAGCCATGATGGCACGCGCA
GGCAGCACAAGTGCTGGCGGTTAGGTGCTGTCAAGTTGTGGCTCTTTCTC
GTTGCAATTTATGCTGGCAACGACTGCGGTGCGGTACAGCAAGGCTGTGA
CATGCGGCTGCTGTTGTACTTTATGTACTTCCGTTTGAGGGGCGGAAGCC
CCATGAAAGATGTTCAATGACTGCAGCTCTTTTGCCTGCGCAATGCGTGT
GCTTACAGTGCATCTGTGAGCTCAGCTGAGAGCAAGTGTATGCTGTTGCA
CTCATGGTCGTTCTGATGTGGACCTAACGTGCAATGGTGCCGCGCAGCGC
AGCGCTCAACATCGCTCGTGTCATCACACTGCAAACACAAGTCTGAAAGT
GCTCCAACGCGCGGGCAACGCCCCCTAGATGATGACACCGCTGGTGCCAG
CATCAAAGCCGTTGACCGTTTTCTCGCTGCTGTTGACAGTGATGCCTAGC
TGTATCGGCAGCTTCCACACGCAGCGTGCAACGTTGGTCAGCTCTCATGC
ACTTACGGCAACAACAAAAAAGTGACCCGCATTTTCCACTGCGCGCGCGC
CGCCGCAGCCGCCACCGTCGACCGCCTCAACCTCCACTTCGAGCCGATGG
CCGCGATGGCGTGCGCCGAGTTCAAGGACTGGGTCGCGCGCACGCTCGCG
CGCAACCTTGAGGGCCACGCCTTCGAGTTCGACACGCGCCAGTGGCAGAC
GAGCGTCGCCAAGTGGTGGGGGCGCGCGCTGGAGGCGGACGAGACGGCGC
GCCTCGAGTTTGCGCGCCAGTACCTGCGGCTGGGGGGGGGGGGCGGCGGC
GGCAGGGGCGGCGCAGCCGGCGGAAGTTCCGTGGAAGCTCATGGCGGCGC
CGCCGCAGAGGAGGAGTGGGAGGACATCTACTTTGAGTGCGCGCAGCAGC
CGCACGCGGAGGGCGCGGAGCTCCAGGGGGGCGGGGGCGGGGGGCAGCGG
GGGGGGGGCAAGGGGGGGAAGGGGGGGCGGGCGCGCGGCTCGCCGCCGTC
CCCGTGTACACGGAGGAGATCGAGGACTGCGCGGTGAACGGGCGGTGGCA
GGTGACGTACGGGGATGACGGCGCGCAGGTGGTGGACTACGTGCCGCGAT
AG
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Coding sequence (CDS) from alignment at Contig_197:244518..246369+

>mRNA_16445 ID=mRNA_16445|Name=jgi.p|Trimin1|353937|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=753bp|location=Sequence derived from alignment at Contig_197:244518..246369+ (Tribonema minus UTEX_B_3156 )
ATGTCGCTGGCGTGGCTGGCGCTAGCGCTAGCCACTGCCCTCGCATCGGG
CTACGTGGCACAGACAGCTCTGCCTGCCGCACCGAGAGGGTCGGCTGACG
CGGCGCAGCAGCAGCAGGCTTGGGTACCCAGTAGCGAGGATATTGCAGCA
GCAGGAGCGGCGCACCGACATCATAACGAGAAGCAGGCCGTGCTGCCCCC
CTTGCGCATCATGGCGAACTTGAGTCCTAGGAGCAGTGGCGGGCCTCGGG
GCATGCGAAACATGCAGGAGCGGGAGTTCTCAACATACCAAAATGCCGCC
ACCGTCGACCGCCTCAACCTCCACTTCGAGCCGATGGCCGCGATGGCGTG
CGCCGAGTTCAAGGACTGGGTCGCGCGCACGCTCGCGCGCAACCTTGAGG
GCCACGCCTTCGAGTTCGACACGCGCCAGTGGCAGACGAGCGTCGCCAAG
TGGTGGGGGCGCGCGCTGGAGGCGGACGAGACGGCGCGCCTCGAGTTTGC
GCGCCAGTACCTGCGGCTGGGGGGGGGGGGCGGCGGCGGCAGGGGCGGCG
CAGCCGGCGGAAGGCGCGGAGCTCCAGGGGGGCGGGGGCGGGGGGCAGCG
GGGGGGGGGCAAGGGGGGGAAGGGGGGGCGGGCGCGCGGCTCGCCGCCGT
CCCCGTGTACACGGAGGAGATCGAGGACTGCGCGGTGAACGGGCGGTGGC
AGGTGACGTACGGGGATGACGGCGCGCAGGTGGTGGACTACGTGCCGCGA
TAG
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