mRNA_16429 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|179630
Unique NamemRNA_16429
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|179630 vs. uniprot
Match: A0A835Z538_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z538_9STRA)

HSP 1 Score: 249 bits (637), Expect = 4.330e-83
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 MRYAHPPHNPXXXXXXXXXXXXXXXLLFPPAPRSRVTPYRRASRLLTSESLSCYAHHTNNARSPLPPPPSISPQYTFTCLHPQPHRVTLTPXXXXXXXXXXLHDLRARAAIKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 453
            MRYAHPPHNPXXXXXXXXXXXXXXXLLFPPAPRSRVTPYRRASRLLTSESLSCYAHHTNNARSPLPPPPSISPQYTFTCLHPQPHRVTLTPXXXXXXXXXXLHDLRARAAIKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR
Sbjct:    1 MRYAHPPHNPXXXXXXXXXXXXXXXLLFPPAPRSRVTPYRRASRLLTSESLSCYAHHTNNARSPLPPPPSISPQYTFTCLHPQPHRVTLTPXXXXXXXXXXLHDLRARAAIKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 151
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BLAST of jgi.p|Trimin1|179630 vs. uniprot
Match: A0A835Z2I1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2I1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.930e-12
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  331 IKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 453
            +KRT+YTP EDAA+LA H Q GNRW QIALSVPGRTENSI+
Sbjct:  101 LKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIK 141
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BLAST of jgi.p|Trimin1|179630 vs. uniprot
Match: A0A836CG12_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG12_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.310e-11
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  328 AIKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 453
            AIKR  Y+ AED A+ AGHA+LGNRWSQIAL VPGRTENSI+
Sbjct:   64 AIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIK 105
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BLAST of jgi.p|Trimin1|179630 vs. uniprot
Match: A0A835Z1Q6_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.630e-8
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  328 AIKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 453
            AI ++DYT  EDA +LA    LGN+WSQIAL +PGRTEN+I+
Sbjct:   34 AINKSDYTAEEDAKILALQKDLGNKWSQIALHLPGRTENAIK 75
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BLAST of jgi.p|Trimin1|179630 vs. uniprot
Match: A0A811PNY5_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811PNY5_9POAL)

HSP 1 Score: 57.4 bits (137), Expect = 7.730e-7
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  331 IKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 453
            ++R  +TP EDAA+LA HA+LGNRW+ IA  +PGRT+N+++
Sbjct:   62 VERRPFTPEEDAAILAAHARLGNRWASIARLLPGRTDNAVK 102
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BLAST of jgi.p|Trimin1|179630 vs. uniprot
Match: A0A0C6WCM2_9POAL (ScMYB3 protein n=1 Tax=Saccharum hybrid cultivar Co 86032 TaxID=672234 RepID=A0A0C6WCM2_9POAL)

HSP 1 Score: 57.0 bits (136), Expect = 8.810e-7
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  331 IKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 453
            ++R  +TP EDAA+LA HA+LGNRW+ IA  +PGRT+N+++
Sbjct:   62 VERRPFTPEEDAAILAAHARLGNRWAAIARLLPGRTDNAVK 102
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BLAST of jgi.p|Trimin1|179630 vs. uniprot
Match: K3YUH1_SETIT (Uncharacterized protein n=3 Tax=Paniceae TaxID=147428 RepID=K3YUH1_SETIT)

HSP 1 Score: 57.0 bits (136), Expect = 1.000e-6
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  331 IKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 453
            ++R  +TP EDAA+LA HA+LGNRW+ IA  +PGRT+N+++
Sbjct:   61 VERRPFTPEEDAAILAAHARLGNRWAAIARLLPGRTDNAVK 101
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BLAST of jgi.p|Trimin1|179630 vs. uniprot
Match: UPI0019D5D2C7 (transcription factor MYB44-like n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5D2C7)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-6
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  331 IKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 453
            ++R  +TP EDAA+LA HA+LGNRW+ IA  +PGRT+N+++
Sbjct:   61 VERRPFTPEEDAAILAAHARLGNRWAAIARLLPGRTDNAVK 101
[Close]
BLAST of jgi.p|Trimin1|179630 vs. uniprot
Match: B4FMQ3_MAIZE (MYB transcription factor n=4 Tax=Andropogoneae TaxID=147429 RepID=B4FMQ3_MAIZE)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-6
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  331 IKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 453
            ++R  +TP EDAA+LA HA+LGNRW+ IA  +PGRT+N+++
Sbjct:   61 VERRPFTPEEDAAILAAHARLGNRWAAIARLLPGRTDNAVK 101
[Close]
BLAST of jgi.p|Trimin1|179630 vs. uniprot
Match: A0A835KVV2_9POAL (Uncharacterized protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835KVV2_9POAL)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-6
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  331 IKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSIR 453
            ++R  +TP EDAA+LA HA+LGNRW+ IA  +PGRT+N+++
Sbjct:   61 VERRPFTPEEDAAILAAHARLGNRWAAIARLLPGRTDNAVK 101
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|179630 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z538_9STRA4.330e-83100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z2I1_9STRA3.930e-1278.05Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A836CG12_9STRA1.310e-1176.19Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835Z1Q6_9STRA4.630e-861.90Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A811PNY5_9POAL7.730e-756.10Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
A0A0C6WCM2_9POAL8.810e-756.10ScMYB3 protein n=1 Tax=Saccharum hybrid cultivar C... [more]
K3YUH1_SETIT1.000e-656.10Uncharacterized protein n=3 Tax=Paniceae TaxID=147... [more]
UPI0019D5D2C71.010e-656.10transcription factor MYB44-like n=2 Tax=Panicum vi... [more]
B4FMQ3_MAIZE1.010e-656.10MYB transcription factor n=4 Tax=Andropogoneae Tax... [more]
A0A835KVV2_9POAL1.010e-656.10Uncharacterized protein n=2 Tax=Digitaria exilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_197contigContig_197:86181..86633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|179630|e_gw1.197.1.1
BRITEko00000,ko03000
KEGG koko:K09422
DescriptionMyb-like DNA-binding domain
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,37ZSW@33090|Viridiplantae,3GPGX@35493|Streptophyta,3KYKS@4447|Liliopsida,3I938@38820|Poales
Evalue4.71e-08
Seed ortholog38727.Pavir.J23512.1.p
Hectar predicted targeting categoryother localisation
TranscriptId179952
TrackFilteredModels1
ProteinId179630
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179630gene_16429Tribonema minus UTEX_B_3156 geneContig_197 86181..86633 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16429_1exon_16429_1Tribonema minus UTEX_B_3156 exonContig_197 86181..86633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16429CDS_16429Tribonema minus UTEX_B_3156 CDSContig_197 86181..86633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179630Trimin1|179630|e_gw1.197.1.1Tribonema minus UTEX_B_3156 polypeptideContig_197 86181..86633 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16429 ID=mRNA_16429|Name=jgi.p|Trimin1|179630|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_197:86181..86633+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTATGCTCATCCCCCTCACAACCCCCCCCCCAACCCCCCCCCCCC
CCCCCCCCAGACGCCCCCCCCCCCCCTCCTTTTTCCTCCTGCCCCCCGCT
CTCGTGTAACTCCATACCGCCGCGCGTCGCGTCTGCTCACCTCTGAAAGC
CTCTCCTGCTACGCACATCACACGAATAATGCTCGTTCCCCCCTTCCCCC
CCCCCCCTCCATCTCCCCCCAATACACCTTCACGTGTCTGCACCCGCAGC
CCCATCGCGTAACGCTGACCCCCCCCCCCCCCCACCCCCCTCCCCCGCCC
CCCCTTCACGATCTCCGCGCCCGCGCAGCCATCAAGCGCACCGACTACAC
GCCCGCGGAGGACGCCGCCGTGCTGGCGGGCCACGCGCAGCTCGGCAACC
GCTGGTCGCAGATCGCGCTGTCCGTCCCCGGCCGCACCGAGAACAGCATC
CGC
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protein sequence of jgi.p|Trimin1|179630

>Trimin1|179630|e_gw1.197.1.1 ID=Trimin1|179630|e_gw1.197.1.1|Name=jgi.p|Trimin1|179630|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp
MRYAHPPHNPPPNPPPPPPQTPPPPLLFPPAPRSRVTPYRRASRLLTSES
LSCYAHHTNNARSPLPPPPSISPQYTFTCLHPQPHRVTLTPPPPHPPPPP
PLHDLRARAAIKRTDYTPAEDAAVLAGHAQLGNRWSQIALSVPGRTENSI
R
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mRNA from alignment at Contig_197:86181..86633+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16429 ID=mRNA_16429|Name=jgi.p|Trimin1|179630|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_197:86181..86633+ (Tribonema minus UTEX_B_3156 )
ATGAGGTATGCTCATCCCCCTCACAACCCCCCCCCCAACCCCCCCCCCCC
CCCCCCCCAGACGCCCCCCCCCCCCCTCCTTTTTCCTCCTGCCCCCCGCT
CTCGTGTAACTCCATACCGCCGCGCGTCGCGTCTGCTCACCTCTGAAAGC
CTCTCCTGCTACGCACATCACACGAATAATGCTCGTTCCCCCCTTCCCCC
CCCCCCCTCCATCTCCCCCCAATACACCTTCACGTGTCTGCACCCGCAGC
CCCATCGCGTAACGCTGACCCCCCCCCCCCCCCACCCCCCTCCCCCGCCC
CCCCTTCACGATCTCCGCGCCCGCGCAGCCATCAAGCGCACCGACTACAC
GCCCGCGGAGGACGCCGCCGTGCTGGCGGGCCACGCGCAGCTCGGCAACC
GCTGGTCGCAGATCGCGCTGTCCGTCCCCGGCCGCACCGAGAACAGCATC
CGC
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Coding sequence (CDS) from alignment at Contig_197:86181..86633+

>mRNA_16429 ID=mRNA_16429|Name=jgi.p|Trimin1|179630|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_197:86181..86633+ (Tribonema minus UTEX_B_3156 )
ATGAGGTATGCTCATCCCCCTCACAACCCCCCCCCCAACCCCCCCCCCCC
CCCCCCCCAGACGCCCCCCCCCCCCCTCCTTTTTCCTCCTGCCCCCCGCT
CTCGTGTAACTCCATACCGCCGCGCGTCGCGTCTGCTCACCTCTGAAAGC
CTCTCCTGCTACGCACATCACACGAATAATGCTCGTTCCCCCCTTCCCCC
CCCCCCCTCCATCTCCCCCCAATACACCTTCACGTGTCTGCACCCGCAGC
CCCATCGCGTAACGCTGACCCCCCCCCCCCCCCACCCCCCTCCCCCGCCC
CCCCTTCACGATCTCCGCGCCCGCGCAGCCATCAAGCGCACCGACTACAC
GCCCGCGGAGGACGCCGCCGTGCTGGCGGGCCACGCGCAGCTCGGCAACC
GCTGGTCGCAGATCGCGCTGTCCGTCCCCGGCCGCACCGAGAACAGCATC
CGC
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