mRNA_16428 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|147039
Unique Name	mRNA_16428
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|147039 vs. uniprot
Match: A0A836CHW8_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW8_9STRA)

HSP 1 Score: 209 bits (533), Expect = 6.270e-69
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1

Query:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 294
            WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP
Sbjct:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 98

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BLAST of jgi.p|Trimin1|147039 vs. uniprot
Match: A0A835Z2I1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2I1_9STRA)

HSP 1 Score: 143 bits (361), Expect = 4.430e-42
Identity = 67/98 (68.37%), Postives = 74/98 (75.51%), Query Frame = 1

Query:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 294
            WTAEEDERLR  V   GE  WK IAA+VG+R+HVQCLQRWKKVLRPGL+KG WT AED  LAR V A    NW  V   L GRTS+QCRERW+HHL+P
Sbjct:    2 WTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDP 99

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BLAST of jgi.p|Trimin1|147039 vs. uniprot
Match: A0A835Z3R6_9STRA (Homeodomain-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.050e-40
Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = 1

Query:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 294
            W  +EDERL   V   G ++WKRIAA+VGTRNHVQCLQRWKKVLRP LKKG+WT  ED LL   V++G  KNWG VA  L  RT +QC+ RWQHHL+P
Sbjct:   12 WAPDEDERLNAAVQAHGATKWKRIAAQVGTRNHVQCLQRWKKVLRPDLKKGDWTPEEDALLTDTVQSGTCKNWGKVALHLPNRTYRQCQLRWQHHLDP 109

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BLAST of jgi.p|Trimin1|147039 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.890e-40
Identity = 69/98 (70.41%), Postives = 74/98 (75.51%), Query Frame = 1

Query:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 294
            WT  EDE LRH V   GES WK IA EVGTRNHVQCLQRWKKVL+PGL KG W+  ED  L  LV  G FKNWG +AAQ+ GRTSKQCRERW HHL+P
Sbjct:   30 WTLVEDEELRHAVRKYGESNWKDIAREVGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKG-FKNWGQLAAQMPGRTSKQCRERWSHHLDP 126

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BLAST of jgi.p|Trimin1|147039 vs. uniprot
Match: A0A662WMC1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMC1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.530e-36
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 1

Query:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 294
            WTA EDE LR  V    E  WK IAA V  RNH QCLQRW KVL PGL KG+W+  EDELL RLV A + KNWG VAA++ GRTSKQCRERW +HL+P
Sbjct:    8 WTAAEDEALRSAVESHREKNWKAIAAHVAGRNHTQCLQRWTKVLAPGLVKGHWSPHEDELLRRLV-AADQKNWGDVAAKIPGRTSKQCRERWHNHLDP 104

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BLAST of jgi.p|Trimin1|147039 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM)

HSP 1 Score: 129 bits (325), Expect = 2.660e-36
Identity = 62/98 (63.27%), Postives = 69/98 (70.41%), Query Frame = 1

Query:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 294
            WT EEDE+LR  V   GE  WK IA EV  RNH QCLQRW KVL PGL KG+W   ED+LL  LV  G  KNWG VA ++ GRTSKQCRERW +HL+P
Sbjct:   12 WTPEEDEKLREAVNRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGR-KNWGQVATRIPGRTSKQCRERWYNHLDP 108

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BLAST of jgi.p|Trimin1|147039 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT)

HSP 1 Score: 129 bits (325), Expect = 2.000e-35
Identity = 61/98 (62.24%), Postives = 69/98 (70.41%), Query Frame = 1

Query:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 294
            WT EED++LR  V   GE  WK IA EV  RNH QCLQRW KVL PGL KG+W   ED+LL  LV  G  KNWG VA ++ GRTSKQCRERW +HL+P
Sbjct:   85 WTPEEDDKLREAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGR-KNWGQVATRIPGRTSKQCRERWYNHLDP 181

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BLAST of jgi.p|Trimin1|147039 vs. uniprot
Match: A0A2D4BRV7_PYTIN (Myblike DNAbinding protein putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRV7_PYTIN)

HSP 1 Score: 134 bits (336), Expect = 2.360e-35
Identity = 64/98 (65.31%), Postives = 72/98 (73.47%), Query Frame = 1

Query:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 294
            WT EED+ LR  V    E  WK IAA+V  RNH QCLQRW KVL PGL KG+W+  EDELL RLV  GN KNWG VAA++ GRTSKQCRERW +HL+P
Sbjct:  225 WTKEEDDALRQAVENHKEKNWKAIAAQVPGRNHTQCLQRWTKVLAPGLVKGHWSPHEDELLKRLVAGGN-KNWGEVAAKIPGRTSKQCRERWHNHLDP 321

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BLAST of jgi.p|Trimin1|147039 vs. uniprot
Match: A0A6H5K458_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K458_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.540e-35
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 1

Query:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 294
            W+ EEDERLR  V     + WK IAAEV TRNHVQCLQRWKKVL PGL KG WT  ED+LL  +V  G+ KNWG ++A++ GRTSKQCRERW HHL+P
Sbjct:   71 WSPEEDERLRAAVERYHGTSWKEIAAEVKTRNHVQCLQRWKKVLTPGLVKGQWTPEEDKLLVSIVNEGH-KNWGSLSARVPGRTSKQCRERWCHHLDP 167

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BLAST of jgi.p|Trimin1|147039 vs. uniprot
Match: A0A3M6VKU0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKU0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 5.140e-35
Identity = 62/98 (63.27%), Postives = 68/98 (69.39%), Query Frame = 1

Query:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP 294
            WT  EDE+LR  V   GE  WK IA EV  RNH QCLQRW KVL PGL KG+W   EDELL  LV  G  KNWG VA ++ GRTSKQCRERW +HL+P
Sbjct:  102 WTPTEDEKLRDAVGRHGERNWKSIAEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPDEDELLKELVAEGR-KNWGQVATRIPGRTSKQCRERWYNHLDP 198

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|147039 vs. uniprot

BLAST of jgi.p|Trimin1|147039 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CHW8_9STRA	6.270e-69	100.00	Homeodomain-like protein (Fragment) n=1 Tax=Tribon...	[more]
A0A835Z2I1_9STRA	4.430e-42	68.37	Homeodomain-like protein (Fragment) n=1 Tax=Tribon...	[more]
A0A835Z3R6_9STRA	2.050e-40	64.29	Homeodomain-like protein (Fragment) n=2 Tax=Tribon...	[more]
A0A7S2UU49_9STRA	2.890e-40	70.41	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A662WMC1_9STRA	2.530e-36	65.31	Uncharacterized protein (Fragment) n=1 Tax=Nothoph...	[more]
H3G911_PHYRM	2.660e-36	63.27	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
D0NJN5_PHYIT	2.000e-35	62.24	Myb-like DNA-binding protein, putative n=2 Tax=Phy...	[more]
A0A2D4BRV7_PYTIN	2.360e-35	65.31	Myblike DNAbinding protein putative n=1 Tax=Pythiu...	[more]
A0A6H5K458_9PHAE	2.540e-35	65.31	MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
A0A3M6VKU0_9STRA	5.140e-35	63.27	Uncharacterized protein n=2 Tax=Peronospora effusa...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_197	contig	Contig_197:84303..85798 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|147039\|gw1.197.29.1
Description	RNA polymerase II transcription regulator recruiting activity
COG category	ADK
Max annot lvl	2880.D7FQG8\|-
EggNOG OGs	COG5147@1\|root,KOG0048@2759\|Eukaryota
Evalue	1.11e-35
Seed ortholog	2880.D7FQG8
Hectar predicted targeting category	other localisation
TranscriptId	147361
Track	FilteredModels1
ProteinId	147039

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|147039	gene_16428	Tribonema minus UTEX_B_3156	gene	Contig_197 84303..85798 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_16428_1	exon_16428_1	Tribonema minus UTEX_B_3156	exon	Contig_197 84303..84383 +
exon_16428_2	exon_16428_2	Tribonema minus UTEX_B_3156	exon	Contig_197 85245..85424 +
exon_16428_3	exon_16428_3	Tribonema minus UTEX_B_3156	exon	Contig_197 85766..85798 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_16428	CDS_16428	Tribonema minus UTEX_B_3156	CDS	Contig_197 84303..84383 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|147039	Trimin1\|147039\|gw1.197.29.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_197 84303..85798 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_197:84303..85798+
coding sequence from alignment at Contig_197:84303..85798+

spliced messenger RNA

>mRNA_16428 ID=mRNA_16428|Name=jgi.p|Trimin1|147039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_197:84303..85798+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGACAGCCGAGGAGGACGAGCGGCTGCGGCACGTCGTCGCGCTGCGCGG
CGAGTCGCAGTGGAAGCGCATCGCCGCGGAGGTCGGCACGCGCAACCACG
TGCAGTGCCTGCAGCGCTGGAAGAAGGTGCTGCGGCCGGGGCTCAAGAAG
GGCAACTGGACGGACGCGGAGGACGAGCTGCTCGCGCGTCTCGTCGAGGC
CGGCAACTTCAAGAACTGGGGCGTCGTCGCCGCACAGCTGGCGGGCAGGA
CTTCCAAGCAGTGCCGCGAGCGCTGGCAGCACCATCTCAACCCT

protein sequence of jgi.p|Trimin1|147039

>Trimin1|147039|gw1.197.29.1 ID=Trimin1|147039|gw1.197.29.1|Name=jgi.p|Trimin1|147039|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKK
GNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQCRERWQHHLNP

mRNA from alignment at Contig_197:84303..85798+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_16428 ID=mRNA_16428|Name=jgi.p|Trimin1|147039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1496bp|location=Sequence derived from alignment at Contig_197:84303..85798+ (Tribonema minus UTEX_B_3156 )
TGGACAGCCGAGGAGGACGAGCGGCTGCGGCACGTCGTCGCGCTGCGCGG
CGAGTCGCAGTGGAAGCGCATCGCCGCGGAGGTGGGTCAATGTGCCGCGC
CGCGCGTGCGCACGCGCGCTGCGAGCTGCAGCAGCGCAGCGCCGCGCGTC
AGCGCTCCGCAGTCTGCGCGAAGCGCGTCACCGTAGGGCTAGAGCGTAGA
AGTATGAGACATCGTGTAAGCCAACTGCCTTCAACGATACCACTCGGGTG
AAGGCGGCGTGCACTTTGGCAGCCGGGCGGCGCGCTGCTGCAGCGTAATG
CAACCAACGCTCTAGCGATGAGCACCATCGGCACGAGCATCGATCATTAT
GGTTGAACTTGATGGCCTGCGTGCCGCATGCCTCAGCCCCCTCCTGCACG
TGCTGTGCCGATGCTCAGTCAGCAGCGGCGCTCCACCTTCGCACGCATAC
TCTTCAAACAGCAATAGAACATGTGCTGCTGCTGCTGCTGCACGAGCACT
TGTTGCCCGAGTCACAGGCACAGACCGCACCGCTGTGCTGGCGCGCACTC
GTGCTGCGCATGTCATCCCTCCGCCCTGAACCCTAGCCCTACGCCTGACT
GCGAAACCGCCACCACGTGCTGGGATGCGCAACAACGTGCAGTAGTGCCT
GCAGCGGTAGAACGAGGTTCTTTCACGTCATCGCTCTGCACGAAACCCCT
AACCCTAACCCTCGCATGAAACCCCCTGACCCCAACTTCAACTCCATCTT
CAACCCCGAAACCGCCGCAGGTCGGCACGCGCAGCCACGTGCAGTGCCTG
CAGCGGTGGAAGAAGGTGCTACCGAGTCATCGCTGTGCATGAACCCCTAA
CCTAACCCTCGCACTAAAGCCCCTCACTCCAACTTCAACCCTGCGAAACC
CCCCTAACTCCAACTTCAACCCTGGAACCGCCTCCGCCGCAGGTCGGCAC
GCGCAACCACGTGCAGTGCCTGCAGCGCTGGAAGAAGGTGCTGCGGCCGG
GGCTCAAGAAGGGCAACTGGACGGACGCGGAGGACGAGCTGCTCGCGCGT
CTCGTCGAGGCCGGCAACTTCAAGAACTGGGGCGTCGTCGCCGCACAGCT
GGCGGGCAGGACTTCCAAGCAGGTACGGTAACGTGCTGGTATGGTATGTG
TGTGTCGAGCGGAGTCAGCTGACAGGGTACGCGCATGGCTCCGCTGGGCC
TGCCGCGGCCCTCGTGTGTGGTCCCTGAGCGGCAGGGCACGCGGACGCCG
CGCGCGGCTGCGCGCGCGCGCGCTGAGTCACGGGTAGTCCGCACTGCGCC
CTGCGTTGTGCAATCCAGACGCTTTCAACGCGCCGCTGGCAGCGCCGCTG
GACTCGCGCACGCTCACTGCAAGTGCCGCTGCCTTTTTGCCAGTTCGCCT
CTCACGCATGCGCCGCTGTTTCCCATTGCCCCGCTTGCTGCTGTCTGCTC
CTCCCCGTCACAGTGCCGCGAGCGCTGGCAGCACCATCTCAACCCT

Coding sequence (CDS) from alignment at Contig_197:84303..85798+

>mRNA_16428 ID=mRNA_16428|Name=jgi.p|Trimin1|147039|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_197:84303..85798+ (Tribonema minus UTEX_B_3156 )
TGGACAGCCGAGGAGGACGAGCGGCTGCGGCACGTCGTCGCGCTGCGCGG
CGAGTCGCAGTGGAAGCGCATCGCCGCGGAGGTCGGCACGCGCAACCACG
TGCAGTGCCTGCAGCGCTGGAAGAAGGTGCTGCGGCCGGGGCTCAAGAAG
GGCAACTGGACGGACGCGGAGGACGAGCTGCTCGCGCGTCTCGTCGAGGC
CGGCAACTTCAAGAACTGGGGCGTCGTCGCCGCACAGCTGGCGGGCAGGA
CTTCCAAGCAGTGCCGCGAGCGCTGGCAGCACCATCTCAACCCT