mRNA_1641 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A836CDN4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN4_9STRA) HSP 1 Score: 171 bits (432), Expect = 9.060e-54 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 Query: 1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS 270 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS Sbjct: 1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS 90
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A835YMG0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG0_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.540e-34 Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 1 Query: 1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQAN 228 AA LRR ALLCRENLLGSVKLLRK+EHTA AVLELFPDLTLAVEE+EPALA EFF+TVR+WVG+LY AVKEVQ N Sbjct: 27 AATLRRSALLCRENLLGSVKLLRKIEHTAGAVLELFPDLTLAVEEQEPALAHEFFSTVRSWVGDLYGAVKEVQAKN 102
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: D7G8N3_ECTSI (Calcium/ calmodulin-dependent protein kinase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N3_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 4.080e-21 Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1 Query: 1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANA 240 AA+LRR A LCRE+L SV LL+K+E TAA V+ LFPDLTLAVEE EP LAR+FFATV++WV E+Y V VQ N ANA Sbjct: 563 AASLRRSAALCRESLRESVTLLKKIERTAAQVITLFPDLTLAVEEGEPDLARDFFATVKSWVREMYTDVNVVQAHNKANA 642
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A6H5L327_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L327_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.380e-20 Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANA 240 AA+LRR A LCRE+L SV LL+K+E TAA V+ LFPDL LAVEE EP LAR+FFATV++WV E+Y V VQ N ANA Sbjct: 13 AASLRRSAALCRESLRESVTLLKKIERTAAQVITLFPDLALAVEEGEPDLARDFFATVKSWVREMYTEVNVVQAHNKANA 92
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A7S3XQ85_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ85_HETAK) HSP 1 Score: 87.4 bits (215), Expect = 1.980e-19 Identity = 44/87 (50.57%), Postives = 65/87 (74.71%), Query Frame = 1 Query: 1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVM 261 AA LR+GA+LCRE + + LLRK+E TAAAVL++F DL LAVEE+EP LA++FF ++R WVGEL+ ++E+Q ++ + + +M Sbjct: 75 AATLRQGAVLCREQMRENAALLRKIERTAAAVLDIFADLELAVEEKEPELAQQFFESLRKWVGELHTQIQELQVQQRSSTNQVHDLM 161
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A7S3HNC2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNC2_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.800e-18 Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1 Query: 1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS 270 A+ +R GA LCRE L S+K+LR++E TAAAVL +FPDL LAVEE EP LA FFATV+ WV +L V Q N A+ H I+ ++ S Sbjct: 476 ASEIREGASLCREQLTQSMKMLRQVEQTAAAVLSMFPDLELAVEEGEPQLALNFFATVKVWVKDLRELVNSTQSINKASMHQIQLIVERS 565
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A4D9CU84_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU84_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 7.420e-16 Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1 Query: 13 RRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQAN 228 +R A+LCR L+ ++KLL+K+E TAA+VLE+FPDL LA+E+ EP+LA +FF TVR WV L +V E Q N Sbjct: 461 KRSAILCRAQLIYTIKLLKKIEQTAASVLEMFPDLELAIEDDEPSLAHDFFETVRKWVAALRHSVAEAQHRN 532
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A7S3UW18_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW18_HETAK) HSP 1 Score: 77.8 bits (190), Expect = 8.780e-15 Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1 Query: 1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQANHANAHAIRWVMSIS 270 A+ LR+GA+LCR + + KLL+++EH ++A+LELF DL LAVEE EP LAR FF ++R WV EL +V+ Q+ + ++ + +M S Sbjct: 57 ASTLRQGAILCRGQMRENDKLLKRIEHISSAILELFGDLELAVEENEPELARGFFESLRKWVSELGKSVRNAQKTHKSSTQEVHDLMEKS 146
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: W7TGE4_9STRA (Calcium calmodulin-dependent protein kinase 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGE4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 7.770e-14 Identity = 33/55 (60.00%), Postives = 46/55 (83.64%), Query Frame = 1 Query: 13 RRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVR 177 +R A+LCR L+ ++KLL+K+E TAA+VLE+FPDL LA+E+ EP+LA +FF TVR Sbjct: 42 KRSAILCRAQLIYTIKLLKKIEQTAASVLEMFPDLELAIEDDEPSLAHDFFETVR 96
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Match: A0A7S1UJ38_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ38_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.830e-12 Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1 Query: 1 AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALAREFFATVRAWVGELYAAVKEVQQAN 228 AA +RR A++CR + S LLR+++ TA +VL+L PDL LAV E+EP LA EFF+TVR WV L + VQ N Sbjct: 419 AAEVRRSAIICRTAQVESAALLRRVQQTADSVLDLIPDLELAVREQEPELAMEFFSTVRTWVQRLTDEITRVQGEN 494 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129722 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1641 ID=mRNA_1641|Name=jgi.p|Trimin1|129722|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_4:993604..993873+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGGCGGCGCTGCGGCGCGGCGCGCTGCTGTGCCGCGAGAACCTCCTCGGback to top protein sequence of jgi.p|Trimin1|129722 >Trimin1|129722|gw1.4.19.1 ID=Trimin1|129722|gw1.4.19.1|Name=jgi.p|Trimin1|129722|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp AAALRRGALLCRENLLGSVKLLRKMEHTAAAVLELFPDLTLAVEEREPALback to top mRNA from alignment at Contig_4:993604..993873+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1641 ID=mRNA_1641|Name=jgi.p|Trimin1|129722|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_4:993604..993873+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_4:993604..993873+ >mRNA_1641 ID=mRNA_1641|Name=jgi.p|Trimin1|129722|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_4:993604..993873+ (Tribonema minus UTEX_B_3156 )back to top |