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Homology
BLAST of jgi.p|Trimin1|353341 vs. uniprot
Match: A0A835Z950_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z950_9STRA) HSP 1 Score: 561 bits (1446), Expect = 5.350e-193 Identity = 519/519 (100.00%), Postives = 519/519 (100.00%), Query Frame = 1
Query: 1 MKGGAAVDATAFGAGATSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXQQLQPHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQHRQPQXXXXXXXXXXXXXXVHASWQELRPDPRVLDLYYSMDDHVQSLLGRIAAARARLLNTADRSQWSQQQRQQQLDAFNKRAAALIAEEQRLQQDFRGVTVHQMWQAEADRRADFLRYANKTAFVVHESWMQFERWRQISNLKVDCTFATPEQRAELAEWSRRQEHKWRAKVDTWLQDEVAELEGDWRQLEAWAARRGVCVTRAPYNVAGAPHASQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPPHLSETEPGQQVLQELAGGPQAESAAEADGTPAAVHNDAPTAAXXXXXXXXXXXXXXXXYVSDASAEYERANKSSTAAVAGTDADTPAVTATAAPSAPASDTDSIISSSAGD 1557
MKGGAAVDATAFGAGATSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXQQLQPHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQHRQPQXXXXXXXXXXXXXXVHASWQELRPDPRVLDLYYSMDDHVQSLLGRIAAARARLLNTADRSQWSQQQRQQQLDAFNKRAAALIAEEQRLQQDFRGVTVHQMWQAEADRRADFLRYANKTAFVVHESWMQFERWRQISNLKVDCTFATPEQRAELAEWSRRQEHKWRAKVDTWLQDEVAELEGDWRQLEAWAARRGVCVTRAPYNVAGAPHASQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPPHLSETEPGQQVLQELAGGPQAESAAEADGTPAAVHNDAPTAAXXXXXXXXXXXXXXXXYVSDASAEYERANKSSTAAVAGTDADTPAVTATAAPSAPASDTDSIISSSAGD
Sbjct: 1 MKGGAAVDATAFGAGATSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXQQLQPHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQHRQPQXXXXXXXXXXXXXXVHASWQELRPDPRVLDLYYSMDDHVQSLLGRIAAARARLLNTADRSQWSQQQRQQQLDAFNKRAAALIAEEQRLQQDFRGVTVHQMWQAEADRRADFLRYANKTAFVVHESWMQFERWRQISNLKVDCTFATPEQRAELAEWSRRQEHKWRAKVDTWLQDEVAELEGDWRQLEAWAARRGVCVTRAPYNVAGAPHASQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPPHLSETEPGQQVLQELAGGPQAESAAEADGTPAAVHNDAPTAAXXXXXXXXXXXXXXXXYVSDASAEYERANKSSTAAVAGTDADTPAVTATAAPSAPASDTDSIISSSAGD 519
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|353341|estExt_Genemark1.C_Ctg_1570033 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 353663 |
| Track | FilteredModels1 |
| ProteinId | 353341 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16374 ID=mRNA_16374|Name=jgi.p|Trimin1|353341|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1825bp|location=Sequence derived from alignment at Contig_157:312068..315394- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGAAGGGGGGTGCTGCTGTCGACGCCACCGCATTTGGAGCTGGCGCCAC TTCTTCTGCCGCTGCCGCCGTCGCCGCCGCCCCCCAGCAGTACCACCAGC AGCACCACCAGCAGTACCACCAACAGCACCACCAGCAGCACCAACAGCTG CAGCCGCACCACCACCACCACCACCAGCAGCAGCAGCCGCAACAGCAGCA GCCGCAGTACCCCCAGCCGCAGCCGCAGCACCACCAGCACCAGCACCAGC AGCAGCAGCAGCAGGCGCAGCAGCACCGGCAGCCGCAGCAGCACGGACAG CAGCAGCAGCAGCAGCCGCAGCAGCCACCGGTGCACGCAAGCTGGCAGGA GTTACGCCCAGATCCGCGTGTGCTGGACCTTTACTATTCCATGGACGACC ATGTGCAGAGCCTGCTGGGCAGGATCGCGGCTGCCAGGGCTCGGCTCCTG AACACTGCTGACCGGTCGCAATGGTCGCAGCAGCAGCGGCAACAGCAGCT CGATGCCTTCAATAAACGTGCGGCAGCGCTCATCGCCGAGGAGCAGCGCT TGCAGCAGGACTTCAGAGGCGTCACCGTCCACCAGATGTGGCAGGCGGAG GCAGACAGGCGCGCCGACTTTCTGCGCTACGCCAACAAAACCGCTTTCGT GGTGCACGAGAGCTGGATGCAGTTCGAGCGCTGGAGGCAGATCTCGAATC TGAAGGTTGACTGCACCTTTGCCACGCCGGAGCAGCGGGCGGAGCTGGCG GAGTGGTCACGCAGGCAGGAGCACAAGTGGCGCGCCAAGGTGGACACCTG GCTGCAAGATGAGGTGGCAGAGCTGGAGGGCGACTGGCGCCAGCTGGAGG CCTGGGCTGCACGCAGGGGGGTATGTGTGACGCGTGCCCCCTACAATGTG GCCGGCGCACCCCATGCGTCGCAGCAGCAGCAGCAGCAGCAGGACCAGCA GGTGCGGCAGCAGCAGCCACGGCAGCAGCAGCCACAGCAGCAGCAGCAGC AGCGGGTTCCGCAGCAGCAGCAGGAGGGCCGGCAGGTGCAGCAGCAGCAG CAGCAGCAGCCACAGCAGCAGCGGCAGCAGCGGGTGCTGCAGCAGCAGGA ACATGAGCAGCGCCAGCCACAGCAGCGCCCGCCGCCGCAGCAGCAGCAGC GGGCACAGCAGCAGCAGCAGCGGCGCGCGCAGCAGCAAGAGCAGCAGCAG CAGCAGCAGCAGCACGAGCCCCCTCACCTGAGCGAGACTGAGCCTGGGCA GCAGGTCCTGCAAGAGCTTGCAGGCGGGCCTCAGGCTGAGTCGGCGGCAG AGGCGGATGGTACCCCTGCAGCTGTGCACAATGATGCGCCCACTGCAGCC GAAGAGTCAGAGGCGGAGGCGACTCGTGCAGCTGTGCAAGCAGACGGCTA TGTGTCCGACGCCTCTGCAGAATATGAGCGCGCCAATAAATCGAGCACTG CTGCGGTGGCCGGCACGGACGCAGACACACCTGCCGTAACCGCAACTGCT GCGCCGTCCGCACCTGCGAGTGACACTGACTCTATCATCAGCAGCAGTGC TGGCGACTAGAGAGGAGCACCGCAGCAAAATATGACCAGTAAAGACAACG GCACCACCAGCAGCGCAACTCACCGCTGCACGGTACGTTGCTCAACAGCG GAGGTATTGTCCCCGCTGTGCCGTCGCAAGCGTTGAGTGTGGGAGCTGGG CGCAATTAGAGTGAAGCCCGCAGTACGCTGTTGTGAGGCAGGCCCTGTGC CAAGTAGTAAATGGTGAGGGGAGGTGTGTGTGTGTGTGGGGGGGGGGGGG GGGGGTCAAGTCTGTGTGCAAGCGC back to topprotein sequence of jgi.p|Trimin1|353341 >Trimin1|353341|estExt_Genemark1.C_Ctg_1570033 ID=Trimin1|353341|estExt_Genemark1.C_Ctg_1570033|Name=jgi.p|Trimin1|353341|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=520bp
MKGGAAVDATAFGAGATSSAAAAVAAAPQQYHQQHHQQYHQQHHQQHQQL QPHHHHHHQQQQPQQQQPQYPQPQPQHHQHQHQQQQQQAQQHRQPQQHGQ QQQQQPQQPPVHASWQELRPDPRVLDLYYSMDDHVQSLLGRIAAARARLL NTADRSQWSQQQRQQQLDAFNKRAAALIAEEQRLQQDFRGVTVHQMWQAE ADRRADFLRYANKTAFVVHESWMQFERWRQISNLKVDCTFATPEQRAELA EWSRRQEHKWRAKVDTWLQDEVAELEGDWRQLEAWAARRGVCVTRAPYNV AGAPHASQQQQQQQDQQVRQQQPRQQQPQQQQQQRVPQQQQEGRQVQQQQ QQQPQQQRQQRVLQQQEHEQRQPQQRPPPQQQQRAQQQQQRRAQQQEQQQ QQQQHEPPHLSETEPGQQVLQELAGGPQAESAAEADGTPAAVHNDAPTAA EESEAEATRAAVQADGYVSDASAEYERANKSSTAAVAGTDADTPAVTATA APSAPASDTDSIISSSAGD* back to topmRNA from alignment at Contig_157:312068..315394- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_16374 ID=mRNA_16374|Name=jgi.p|Trimin1|353341|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3327bp|location=Sequence derived from alignment at Contig_157:312068..315394- (Tribonema minus UTEX_B_3156 ) ATGAAGGGGGGTGCTGCTGTCGACGCCACCGCATTTGGAGCTGGCGCCAC
TTCTTCTGCCGCTGCCGCCGTCGCCGCCGCCCCCCAGCAGTACCACCAGC
AGCACCACCAGCAGTACCACCAACAGCACCACCAGCAGCACCAACAGCTG
CAGCCGCACCACCACCACCACCACCAGCAGCAGCAGCCGCAACAGCAGCA
GCCGCAGTACCCCCAGCCGCAGCCGCAGCACCACCAGCACCAGCACCAGC
AGCAGCAGCAGCAGGCGCAGCAGCACCGGCAGCCGCAGCAGCACGGACAG
CAGCAGCAGCAGCAGCCGCAGCAGCCACCGGTGCACGCAAGCTGGCAGGA
GTTACGCCCAGATCCGCGTGTGCTGGACCTTTACTATTCCATGGACGACC
ATGTGCAGAGCCTGCTGGGCAGGATCGCGGCTGCCAGGGCTCGGCTCCTG
AACACTGCTGACCGGTCGCAATGGTCGCAGCAGCAGCGGCAACAGCAGCT
CGATGCCTTCAATAAACGTGCGGCAGCGCTCATCGCCGAGGAGCAGCGCT
TGCAGCAGGACTTCAGAGGCGTCACCGTCCACCAGATGTGGCAGGCGGAG
GCAGACAGGCGCGCCGACTTTCTGCGCTACGCCAACAAAACCGCTTTCGT
GGTGCACGAGAGCTGGATGCAGTTCGAGCGCTGGAGGCAGATCTCGAATC
TGAAGGTTGACTGCACCTTTGCCACGCCGGAGCAGCGGGCGGAGCTGGCG
GAGTGGTCACGCAGGCAGGAGCACAAGTGGCGCGCCAAGGTGGACACCTG
GCTGCAAGATGAGGTGGCAGAGCTGGAGGGCGACTGGCGCCAGCTGGAGG
CCTGGGCTGCACGCAGGGGGGTATGTGTGACGCGTGCCCCCTACAATGTG
GCCGGCGCACCCCATGCGTCGCAGCAGCAGCAGCAGCAGCAGGACCAGCA
GGTGCGGCAGCAGCAGCCACGGCAGCAGCAGCCACAGCAGCAGCAGCAGC
AGCGGGTTCCGCAGCAGCAGCAGGAGGGCCGGCAGGTGCAGCAGCAGCAG
CAGCAGCAGCCACAGCAGCAGCGGCAGCAGCGGGTGCTGCAGCAGCAGGA
ACATGAGCAGCGCCAGCCACAGCAGCGCCCGCCGCCGCAGCAGCAGCAGC
GGGCACAGCAGCAGCAGCAGCGGCGCGCGCAGCAGCAAGAGCAGCAGCAG
CAGCAGCAGCAGCACGAGCCCCCTCACCTGAGCGAGACTGAGCCTGGGCA
GCAGGTCCTGCAAGAGCTTGCAGGCGGGCCTCAGGCTGAGTCGGCGGCAG
AGGCGGATGGTACCCCTGCAGCTGTGCACAATGATGCGCCCACTGCAGCC
GAAGAGGTGAGCATTTTTGACACACTTCAACCATACTCTAGTTGGCTGCT
GACGAGCAAGCACGTGTTGGCGCTCATGTGTGTGAGAGAAAGAGAGAGAG
AGACAGAGGATGAGCAGTGATGGGCTGTCAGAAAGCAGGCAGGCTGAGCC
CTGCTGACGATGACAGCCGACCCGCTTTGGCTGTAGGCGTTGCCCATTTT
GTCAAAATTGGAGATTGTTGTCAAGATCAAGCCGCAGTGATCTCATTTCA
TCAGGTGAAGTGTGCATTCACATTCATTAAACCTCGGTGTATGCTCTGTG
TCGCACTGCCGTTGCGCATCATGAAAAACGCAACCATCTGTGGTTCCTCA
TGCCCCTCTACGATGGTATGCTGCATGTTGAGATGACCACGCGCGCAGCA
TTTCTGATTTATGTACGTCATCATCACGAACATGACAATGTGCTACTTGC
AAAGTGTTGTCCATGTACCAAGCGAACAATAGAGTATCACTGACAGCAAG
TGCGCTGTGCCGACATCATTGCAGGCCTACTTTTGGCTCACCTACATGAC
TTGTAGATAATGACTACAGCTGGTGGTGTAGCGCTGCCCAATCACACGAG
AGGCAGAGCCTAGGCCTCATTGCGCTCTCCTGATATCGGTGATGTTTTTC
CCCACAGGACCAAGGGGATGAAGCAATTTGGCTGCTGTCTGACCAAGACT
CTCAGTCTGACTCAGGGTCTCCGCGGGCTGAGGCAGAGTCTGACTTGGCG
GTGTCTGAGTCAGAGGCGGAGGCGACTCGTGCAGCTGTGCAAGCAGACGG
CTATGTGTCCGACGCCTCTGCAGAATATGAGGTGAGCATTTGACACGCCC
GAACATATCTTCAACCGTCACTCTTCAACTCTGGTTGTTCGCTGGTGAAC
GTATGCACGTTGGCGTAGCAGATGTACCACACAGTCAGAGAGGGTGCCTG
CTGTAGAGAGTATACATGACCTGCAAAGGAATACTTCAAAGTATGCAGCG
CTGCTGACAATGACTGTAAACTCTCATTTGCCAGTAGGTCGCTGATATCA
TGGTCAACATCTCTCGACAGACACGCCGCACTCTCTTGCCACTTCATTGT
CACAAAGAGTCTGTGTATTTACATTTGTGAACCTTTACTGTTTGGAACTA
CAGACATCAGTGCTCACAAGCTCATGTGTCACATCACTGATGCGCATGAT
GAAAAACACCTGCAGCGCCAACAATGCCCTCATTTTCAAGTGTACGCTGT
GTCTGATGATGCCTGTCGTGAAGACGTGCAGTGCACTTGTGCCCTACATT
TGCTTTCAAATCCACACACAGGCGTGATTTGTGCGGTGTGTCTTGTACCA
GGGAGTACTGAAGCTGACTGAGCATCGCAACGACACACTGCGGCCTGCTT
TTTGGCCTATCTAAATATACGTGAGCTATGGTAATGTCATGTGATCTCTC
AGTCACTTGTGAGAAAGTATCTCACGTTTGCTCCCTCGATTTCGCTGCGT
TTGCTCCCAACTGCAGAATGAAGACGATGGCGCAGCGCCGACTGGCTTTC
AAACCGCCGCAACCATGGCACATTTCACAGCGCGCCAATAAATCGAGCAC
TGCTGCGGTGGCCGGCACGGACGCAGACACACCTGCCGTAACCGCAACTG
CTGCGCCGTCCGCACCTGCGAGTGACACTGACTCTATCATCAGCAGCAGT
GCTGGCGACTAGAGAGGAGCACCGCAGCAAAATATGACCAGTAAAGACAA
CGGCACCACCAGCAGCGCAACTCACCGCTGCACGGTACGTTGCTCAACAG
CGGAGGTATTGTCCCCGCTGTGCCGTCGCAAGCGTTGAGTGTGGGAGCTG
GGCGCAATTAGAGTGAAGCCCGCAGTACGCTGTTGTGAGGCAGGCCCTGT
GCCAAGTAGTAAATGGTGAGGGGAGGTGTGTGTGTGTGTGGGGGGGGGGG
GGGGGGGTCAAGTCTGTGTGCAAGCGC back to topCoding sequence (CDS) from alignment at Contig_157:312068..315394- >mRNA_16374 ID=mRNA_16374|Name=jgi.p|Trimin1|353341|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1560bp|location=Sequence derived from alignment at Contig_157:312068..315394- (Tribonema minus UTEX_B_3156 ) ATGAAGGGGGGTGCTGCTGTCGACGCCACCGCATTTGGAGCTGGCGCCAC TTCTTCTGCCGCTGCCGCCGTCGCCGCCGCCCCCCAGCAGTACCACCAGC AGCACCACCAGCAGTACCACCAACAGCACCACCAGCAGCACCAACAGCTG CAGCCGCACCACCACCACCACCACCAGCAGCAGCAGCCGCAACAGCAGCA GCCGCAGTACCCCCAGCCGCAGCCGCAGCACCACCAGCACCAGCACCAGC AGCAGCAGCAGCAGGCGCAGCAGCACCGGCAGCCGCAGCAGCACGGACAG CAGCAGCAGCAGCAGCCGCAGCAGCCACCGGTGCACGCAAGCTGGCAGGA GTTACGCCCAGATCCGCGTGTGCTGGACCTTTACTATTCCATGGACGACC ATGTGCAGAGCCTGCTGGGCAGGATCGCGGCTGCCAGGGCTCGGCTCCTG AACACTGCTGACCGGTCGCAATGGTCGCAGCAGCAGCGGCAACAGCAGCT CGATGCCTTCAATAAACGTGCGGCAGCGCTCATCGCCGAGGAGCAGCGCT TGCAGCAGGACTTCAGAGGCGTCACCGTCCACCAGATGTGGCAGGCGGAG GCAGACAGGCGCGCCGACTTTCTGCGCTACGCCAACAAAACCGCTTTCGT GGTGCACGAGAGCTGGATGCAGTTCGAGCGCTGGAGGCAGATCTCGAATC TGAAGGTTGACTGCACCTTTGCCACGCCGGAGCAGCGGGCGGAGCTGGCG GAGTGGTCACGCAGGCAGGAGCACAAGTGGCGCGCCAAGGTGGACACCTG GCTGCAAGATGAGGTGGCAGAGCTGGAGGGCGACTGGCGCCAGCTGGAGG CCTGGGCTGCACGCAGGGGGGTATGTGTGACGCGTGCCCCCTACAATGTG GCCGGCGCACCCCATGCGTCGCAGCAGCAGCAGCAGCAGCAGGACCAGCA GGTGCGGCAGCAGCAGCCACGGCAGCAGCAGCCACAGCAGCAGCAGCAGC AGCGGGTTCCGCAGCAGCAGCAGGAGGGCCGGCAGGTGCAGCAGCAGCAG CAGCAGCAGCCACAGCAGCAGCGGCAGCAGCGGGTGCTGCAGCAGCAGGA ACATGAGCAGCGCCAGCCACAGCAGCGCCCGCCGCCGCAGCAGCAGCAGC GGGCACAGCAGCAGCAGCAGCGGCGCGCGCAGCAGCAAGAGCAGCAGCAG CAGCAGCAGCAGCACGAGCCCCCTCACCTGAGCGAGACTGAGCCTGGGCA GCAGGTCCTGCAAGAGCTTGCAGGCGGGCCTCAGGCTGAGTCGGCGGCAG AGGCGGATGGTACCCCTGCAGCTGTGCACAATGATGCGCCCACTGCAGCC GAAGAGTCAGAGGCGGAGGCGACTCGTGCAGCTGTGCAAGCAGACGGCTA TGTGTCCGACGCCTCTGCAGAATATGAGCGCGCCAATAAATCGAGCACTG CTGCGGTGGCCGGCACGGACGCAGACACACCTGCCGTAACCGCAACTGCT GCGCCGTCCGCACCTGCGAGTGACACTGACTCTATCATCAGCAGCAGTGC TGGCGACTAG back to top
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