mRNA_16356 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|177681
Unique Name	mRNA_16356
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|177681 vs. uniprot
Match: A0A835Z941_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z941_9STRA)

HSP 1 Score: 554 bits (1427), Expect = 8.950e-200
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1

Query:    1 MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNCKPASPIFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVPVCCPLALVSTPTATDTIENTE 792
            MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNCKPASPIFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVPVCCPLALVSTPTATDTIENTE
Sbjct:    1 MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNCKPASPIFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVPVCCPLALVSTPTATDTIENTE 264

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BLAST of jgi.p|Trimin1|177681 vs. uniprot
Match: A0A836CG03_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG03_9STRA)

HSP 1 Score: 386 bits (991), Expect = 1.440e-127
Identity = 191/267 (71.54%), Postives = 212/267 (79.40%), Query Frame = 1

Query:    1 MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNCKPASPIFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVPV---CCPLALVSTPTATDTIENTE 792
            MSDFQA+IER+ND +DY  EN+ALCALEFNVRAGWSVAKVKYAATHTDRV+I TVEANV EALIKPT+ +PA  IFKKEED VTLTRCNTCCEWRAQQDF D ER TCKRCV D++K+YG TWRGAF  LV +A H CK  T EARGLVCEITFED VN+Y+EQ G C YSGIPLT +GDWKVSLERRDV VGY+  NCCL+A EFQG D+T  SKYGG G G WSR KY +FR NY PA+VPV     P AL    +  DT+E  E
Sbjct:  418 MSDFQASIERLNDDEDYLVENTALCALEFNVRAGWSVAKVKYAATHTDRVEITTVEANVREALIKPTSYRPAGRIFKKEEDRVTLTRCNTCCEWRAQQDFYDYERITCKRCVIDKKKLYGFTWRGAFMNLVHSAKHRCKTGTIEARGLVCEITFEDIVNIYKEQCGTCSYSGIPLTTDGDWKVSLERRDVRVGYSRENCCLIAMEFQGTDYTAVSKYGGDGCGGWSREKYLFFRANYKPADVPVQSLAPPRAL----SVADTLETIE 680

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BLAST of jgi.p|Trimin1|177681 vs. uniprot
Match: A0A835Z7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X8_9STRA)

HSP 1 Score: 374 bits (961), Expect = 1.410e-121
Identity = 185/265 (69.81%), Postives = 204/265 (76.98%), Query Frame = 1

Query:    1 MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNCKPASPIFK-KEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVPVCCPLALVSTPTATDTIENTE 792
            MSD+QA+IER+ND +DY  ENSALCALEFNVRAGW+VAK +YAATHTD VD ATVEANV EAL KP   + A  + + KEE GV +  C+TCC W+ Q DF +C R+ CK C+  R K YG+TWRGAF  LV NAT  CK PTREARGLVC+ITFED  NMYR+Q GVC YSGIPLT EGDWKVSLERRDV VGYT  NCCL+A EFQ  D T  SKY GTG   WS  KYEYFR NYDPANVPV  PLALVS PTATDTIENTE
Sbjct:  548 MSDWQASIERLNDDEDYLVENSALCALEFNVRAGWTVAKARYAATHTDSVDAATVEANVREALCKPPTSRRARGLRQQKEEQGVIIALCDTCCVWKPQNDFYECTRTICKGCMISRAKQYGSTWRGAFFILVNNATKRCKVPTREARGLVCDITFEDLANMYRDQCGVCSYSGIPLTTEGDWKVSLERRDVRVGYTRENCCLIAMEFQSADLTAVSKYEGTGCAGWSLQKYEYFRANYDPANVPVRRPLALVSAPTATDTIENTE 812

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BLAST of jgi.p|Trimin1|177681 vs. uniprot
Match: A0A835YXZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ2_9STRA)

HSP 1 Score: 325 bits (832), Expect = 7.650e-108
Identity = 156/242 (64.46%), Postives = 181/242 (74.79%), Query Frame = 1

Query:    1 MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNCKPASPIFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANV 726
            M+ +QA+I R+++ DDY   NSALCALEFNVRAGW+ AK KYAATHTD VD ATVE NV EAL K T  KP   + +KEE GV LT C  CC+W+ Q DF D   +TCK C SD+ K Y +TWRGAF RLV NA H+C+ PTREARGLVC+ITF+D VNMY EQ G C YSG+PLT EGDWKVSLER++VHVGY  +NCCL+A EFQG DHT  S    TG G W+R KY +FR NYDPANV
Sbjct:  103 MTHWQASIVRLDNNDDYLVNNSALCALEFNVRAGWTAAKAKYAATHTDSVDNATVEDNVCEALSKRTIRKPYCRMQRKEEGGVILTLCGICCKWKLQTDFYDSMGTTCKGCTSDKSKHYVSTWRGAFLRLVGNALHSCRTPTREARGLVCDITFKDIVNMYSEQSGCCMYSGVPLTKEGDWKVSLERKNVHVGYIRKNCCLIAMEFQGNDHTARSMLDSTGGGGWTRDKYLFFRANYDPANV 344

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BLAST of jgi.p|Trimin1|177681 vs. uniprot
Match: A0A835YI85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI85_9STRA)

HSP 1 Score: 326 bits (835), Expect = 6.640e-106
Identity = 164/265 (61.89%), Postives = 192/265 (72.45%), Query Frame = 1

Query:    1 MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNC-KPASPIFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVPVCCPLALVSTPTATDTIENTE 792
            MSD+QA+IER+ND +DY   NS LCALEFNVRAGW+VAK KYAATHTD VD ATV A VH+AL  PT   K  SP+ +KE DG  LT CN CC W+   DF +  ++ CK+C+ D  + Y ATWRGAF  LV NAT  C+  TREARGLVC+ITFED VNMY+EQ G C YSGIPLT +GDWK+SLER+DVHVGYT +N CL+A EFQ  DHT  + YGGTGSG WSR K  +FR NY+PA VPV   LA     +A DT+E  E
Sbjct:  270 MSDWQASIERLNDNEDYIVHNSTLCALEFNVRAGWTVAKAKYAATHTDSVDTATVAAVVHKALSTPTTKHKRPSPMQQKEVDGSNLTLCNICCIWKVHGDFHESNKTLCKKCMKDSSEKYAATWRGAFFILVNNATKRCQTRTREARGLVCDITFEDVVNMYQEQLGGCLYSGIPLTTKGDWKMSLERKDVHVGYTRQNSCLIAMEFQSADHTACTTYGGTGSGGWSREKSLFFRANYNPAYVPVR-QLAPPREVSAADTLEMIE 533

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BLAST of jgi.p|Trimin1|177681 vs. uniprot
Match: A0A835YM24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM24_9STRA)

HSP 1 Score: 324 bits (831), Expect = 4.010e-101
Identity = 159/244 (65.16%), Postives = 181/244 (74.18%), Query Frame = 1

Query:    1 MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNC-KPASPIFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVP 729
            MSD+QA+IERI D +DYT  NSAL ALEFNVRAGW+VAK +YAATHTDRVD A VEA   EAL KPTN  + A P  +KEEDG TLT C +C  W+ Q+DF    R+ CK C+ +  K + +TWRGAFKRLV NAT  CK PTR ARGLVC ITFED V+MY EQ G C YS IP+T EGDWK+SLER+DVHVGY+  NCC++A EFQ  D T  SKYGG G  AWS  KY YFR NYDPANVP
Sbjct:  694 MSDWQASIERIRDDEDYTVANSALSALEFNVRAGWTVAKARYAATHTDRVDTAIVEAVAREALSKPTNQHRAARPWQQKEEDGATLTLCTSCAAWKLQEDFYASSRTICKECMCNAVKRFESTWRGAFKRLVKNATAHCKLPTRAARGLVCSITFEDLVDMYSEQGGACCYSRIPVTIEGDWKLSLERKDVHVGYSRENCCIIAMEFQSADFTATSKYGGDGCAAWSAIKYNYFRANYDPANVP 937

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BLAST of jgi.p|Trimin1|177681 vs. uniprot
Match: A0A836CFZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ5_9STRA)

HSP 1 Score: 322 bits (826), Expect = 4.580e-101
Identity = 156/244 (63.93%), Postives = 183/244 (75.00%), Query Frame = 1

Query:    1 MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNCKPASP-IFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVP 729
            MSD+QA++ER++D  DY   N ALCALEFNV AGW+ AK KYAATHTD ++ ATVEAN+ EAL++P   + A+  +F++EE GVTLT CN C  W+ QQ F    R+TC  C   RQ   G+TWRGA +RLV NA  +CK PTREARGLVCEITFED V MYREQRG C YSGIPL   GDWKVSLERRDV +GYT +N CL+AAEFQGIDHT  S    TGSGAW+R KY +FR NY+PANVP
Sbjct:  612 MSDWQASLERLDDNIDYRVANCALCALEFNVAAGWTAAKAKYAATHTDSIEPATVEANMREALLQPPKKRRAARRLFQREEGGVTLTLCNVCKVWKLQQKFQTSNRATCSACRGRRQNEIGSTWRGALRRLVANANSSCKMPTREARGLVCEITFEDVVGMYREQRGACLYSGIPLAKAGDWKVSLERRDVRIGYTLQNTCLIAAEFQGIDHTAHSIIESTGSGAWTRQKYLFFRANYNPANVP 855

[Close]

BLAST of jgi.p|Trimin1|177681 vs. uniprot
Match: A0A836CDF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF9_9STRA)

HSP 1 Score: 306 bits (784), Expect = 3.470e-98
Identity = 149/244 (61.07%), Postives = 173/244 (70.90%), Query Frame = 1

Query:    1 MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNC-KPASPIFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVP 729
            MSD+QATIER+ D +DYT  N+AL ALEFN RA W+    +YAATHTD VD A VEA   EAL KPTN  + A P  +KEEDG TLT C +C  W+ QQDF    R+ CK C+ +  K   ATWRGAFKRLV NAT  CK P R ARGL+C ITF+D V+MYREQ G CFYS IP+T EGDWK+SL+R+DVHVGY   NCC++A EFQ  D T  SKYGG G   WS  KY YFR +Y+PANVP
Sbjct:  286 MSDWQATIERLRDDEDYTVANTALSALEFNTRAKWTAENARYAATHTDSVDAAIVEAVAREALFKPTNQHRVAQPWQQKEEDGATLTLCTSCAVWKLQQDFYASLRTICKECMCNAVKQVEATWRGAFKRLVNNATAHCKLPARAARGLICTITFKDLVDMYREQGGACFYSRIPVTTEGDWKMSLKRKDVHVGYARANCCIIAMEFQSADFTATSKYGGEGCAGWSAIKYNYFRASYNPANVP 529

[Close]

BLAST of jgi.p|Trimin1|177681 vs. uniprot
Match: A0A835YK65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK65_9STRA)

HSP 1 Score: 309 bits (791), Expect = 1.760e-96
Identity = 150/244 (61.48%), Postives = 172/244 (70.49%), Query Frame = 1

Query:    1 MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEAL-IKPTNCKPASPIFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVP 729
            MSD+QA+IER+N+ +DYT  NSALC LEFNV AGW+ AK  YAATHTD V  ATV+  V EAL    T CK   P+ +KEEDGV +T C  C  W+   DF   +R  CK C  DR K Y +TWRGAF  +VT+A+  CK  T EARGLVC I F+D VNMY EQ G C YSGIPLT +GDWKVSLERRDV VGYT  NCCL+A EFQG D+T  SKYGG G   WSR KY +FR NY+PANVP
Sbjct:  546 MSDWQASIERLNNDEDYTISNSALCVLEFNVAAGWTAAKAAYAATHTDSVHTATVQTIVREALSTSATACKYPIPMQQKEEDGVIMTLCYKCSNWKHDSDFYKSDRVMCKGCCCDRAKQYASTWRGAFFMMVTHASQRCKTTTHEARGLVCNIRFDDVVNMYSEQGGGCLYSGIPLTTKGDWKVSLERRDVRVGYTRENCCLIAMEFQGTDYTAVSKYGGDGCSGWSREKYLFFRTNYNPANVP 789

[Close]

BLAST of jgi.p|Trimin1|177681 vs. uniprot
Match: A0A836CHC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC7_9STRA)

HSP 1 Score: 270 bits (690), Expect = 2.140e-88
Identity = 130/207 (62.80%), Postives = 154/207 (74.40%), Query Frame = 1

Query:   19 TIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRVDIATVEANVHEALIKPTNCKPASPIFKKEEDGVTLTRCNTCCEWRAQQDFSDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGI--PLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDH 633
            ++ER+ND +DYT +N+A  ALEFN RAGW VAK KYAATHTD VD ATV+ANV EAL KPT  K    + + EE GVTL RC+ CC W+ + DF +   +TC  CVSDR K+Y  TWRGAFK LV +ATH+CK PTR ARGLVCEITFED V+MYREQ G C +S I  PLT  GDWKVSLE+RDV++GY+   CC +A EFQG DH
Sbjct:    2 SVERLNDDEDYTVDNTAASALEFNTRAGWKVAKAKYAATHTDSVDNATVKANVREALSKPTKRKHYGRMQQNEEGGVTLIRCSVCCVWKLRDDFYEDAGTTCNACVSDRAKLYFTTWRGAFKGLVGSATHSCKTPTRAARGLVCEITFEDLVDMYREQCGACAHSDIDIPLTTNGDWKVSLEKRDVNIGYSRHTCCFIAQEFQGSDH 208

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|177681 vs. uniprot

BLAST of jgi.p|Trimin1|177681 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z941_9STRA	8.950e-200	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CG03_9STRA	1.440e-127	71.54	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z7X8_9STRA	1.410e-121	69.81	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YXZ2_9STRA	7.650e-108	64.46	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YI85_9STRA	6.640e-106	61.89	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YM24_9STRA	4.010e-101	65.16	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CFZ5_9STRA	4.580e-101	63.93	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CDF9_9STRA	3.470e-98	61.07	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YK65_9STRA	1.760e-96	61.48	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CHC7_9STRA	2.140e-88	62.80	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_157	contig	Contig_157:144198..144992 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|177681\|e_gw1.157.2.1
Hectar predicted targeting category	other localisation
TranscriptId	178003
Track	FilteredModels1
ProteinId	177681

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177681	gene_16356	Tribonema minus UTEX_B_3156	gene	Contig_157 144198..144992 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_16356_1	exon_16356_1	Tribonema minus UTEX_B_3156	exon	Contig_157 144198..144992 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_16356	CDS_16356	Tribonema minus UTEX_B_3156	CDS	Contig_157 144198..144992 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177681	Trimin1\|177681\|e_gw1.157.2.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_157 144198..144992 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_157:144198..144992+
coding sequence from alignment at Contig_157:144198..144992+

spliced messenger RNA

>mRNA_16356 ID=mRNA_16356|Name=jgi.p|Trimin1|177681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=795bp|location=Sequence derived from alignment at Contig_157:144198..144992+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGACTTCCAGGCTACCATTGAACGAATCAATGATCAAGATGACTA
CACTTTCGAGAATAGTGCTCTGTGTGCGCTTGAATTCAACGTGCGCGCTG
GTTGGAGTGTGGCGAAGGTCAAGTATGCAGCCACACACACTGACAGGGTA
GATATAGCTACTGTGGAGGCCAATGTGCATGAAGCGCTCATCAAGCCCAC
AAATTGCAAGCCCGCCAGCCCCATCTTCAAGAAGGAGGAGGATGGGGTAA
CTTTGACTCGCTGCAACACCTGCTGCGAATGGCGAGCACAACAGGACTTC
TCTGATTGTGAAAGAAGTACGTGCAAGAGATGCGTGAGCGACAGGCAGAA
AATGTATGGGGCCACATGGCGTGGAGCATTTAAGAGATTGGTAACAAACG
CGACTCACACTTGCAAAAGACCGACCCGTGAGGCGCGGGGGTTGGTGTGT
GAGATCACATTCGAGGACGCCGTCAACATGTACCGCGAGCAGAGGGGTGT
GTGTTTCTACAGTGGCATTCCGCTGACGGCGGAGGGTGACTGGAAAGTGT
CACTAGAGAGGAGAGATGTGCATGTGGGATACACCGGTCGGAACTGCTGC
TTGGTTGCTGCAGAATTTCAGGGAATAGACCATACAGTGGACAGCAAATA
TGGGGGCACGGGGTCTGGCGCATGGTCACGTTCGAAATATGAGTACTTCA
GGGACAATTATGACCCTGCCAATGTCCCTGTGTGTTGTCCTCTGGCGCTA
GTTTCTACTCCGACAGCGACTGATACCATTGAGAACACTGAGTAA

protein sequence of jgi.p|Trimin1|177681

>Trimin1|177681|e_gw1.157.2.1 ID=Trimin1|177681|e_gw1.157.2.1|Name=jgi.p|Trimin1|177681|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=265bp
MSDFQATIERINDQDDYTFENSALCALEFNVRAGWSVAKVKYAATHTDRV
DIATVEANVHEALIKPTNCKPASPIFKKEEDGVTLTRCNTCCEWRAQQDF
SDCERSTCKRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVC
EITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCC
LVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVPVCCPLAL
VSTPTATDTIENTE*

mRNA from alignment at Contig_157:144198..144992+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_16356 ID=mRNA_16356|Name=jgi.p|Trimin1|177681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=795bp|location=Sequence derived from alignment at Contig_157:144198..144992+ (Tribonema minus UTEX_B_3156 )
ATGTCGGACTTCCAGGCTACCATTGAACGAATCAATGATCAAGATGACTA
CACTTTCGAGAATAGTGCTCTGTGTGCGCTTGAATTCAACGTGCGCGCTG
GTTGGAGTGTGGCGAAGGTCAAGTATGCAGCCACACACACTGACAGGGTA
GATATAGCTACTGTGGAGGCCAATGTGCATGAAGCGCTCATCAAGCCCAC
AAATTGCAAGCCCGCCAGCCCCATCTTCAAGAAGGAGGAGGATGGGGTAA
CTTTGACTCGCTGCAACACCTGCTGCGAATGGCGAGCACAACAGGACTTC
TCTGATTGTGAAAGAAGTACGTGCAAGAGATGCGTGAGCGACAGGCAGAA
AATGTATGGGGCCACATGGCGTGGAGCATTTAAGAGATTGGTAACAAACG
CGACTCACACTTGCAAAAGACCGACCCGTGAGGCGCGGGGGTTGGTGTGT
GAGATCACATTCGAGGACGCCGTCAACATGTACCGCGAGCAGAGGGGTGT
GTGTTTCTACAGTGGCATTCCGCTGACGGCGGAGGGTGACTGGAAAGTGT
CACTAGAGAGGAGAGATGTGCATGTGGGATACACCGGTCGGAACTGCTGC
TTGGTTGCTGCAGAATTTCAGGGAATAGACCATACAGTGGACAGCAAATA
TGGGGGCACGGGGTCTGGCGCATGGTCACGTTCGAAATATGAGTACTTCA
GGGACAATTATGACCCTGCCAATGTCCCTGTGTGTTGTCCTCTGGCGCTA
GTTTCTACTCCGACAGCGACTGATACCATTGAGAACACTGAGTAA

Coding sequence (CDS) from alignment at Contig_157:144198..144992+

>mRNA_16356 ID=mRNA_16356|Name=jgi.p|Trimin1|177681|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=795bp|location=Sequence derived from alignment at Contig_157:144198..144992+ (Tribonema minus UTEX_B_3156 )
ATGTCGGACTTCCAGGCTACCATTGAACGAATCAATGATCAAGATGACTA
CACTTTCGAGAATAGTGCTCTGTGTGCGCTTGAATTCAACGTGCGCGCTG
GTTGGAGTGTGGCGAAGGTCAAGTATGCAGCCACACACACTGACAGGGTA
GATATAGCTACTGTGGAGGCCAATGTGCATGAAGCGCTCATCAAGCCCAC
AAATTGCAAGCCCGCCAGCCCCATCTTCAAGAAGGAGGAGGATGGGGTAA
CTTTGACTCGCTGCAACACCTGCTGCGAATGGCGAGCACAACAGGACTTC
TCTGATTGTGAAAGAAGTACGTGCAAGAGATGCGTGAGCGACAGGCAGAA
AATGTATGGGGCCACATGGCGTGGAGCATTTAAGAGATTGGTAACAAACG
CGACTCACACTTGCAAAAGACCGACCCGTGAGGCGCGGGGGTTGGTGTGT
GAGATCACATTCGAGGACGCCGTCAACATGTACCGCGAGCAGAGGGGTGT
GTGTTTCTACAGTGGCATTCCGCTGACGGCGGAGGGTGACTGGAAAGTGT
CACTAGAGAGGAGAGATGTGCATGTGGGATACACCGGTCGGAACTGCTGC
TTGGTTGCTGCAGAATTTCAGGGAATAGACCATACAGTGGACAGCAAATA
TGGGGGCACGGGGTCTGGCGCATGGTCACGTTCGAAATATGAGTACTTCA
GGGACAATTATGACCCTGCCAATGTCCCTGTGTGTTGTCCTCTGGCGCTA
GTTTCTACTCCGACAGCGACTGATACCATTGAGAACACTGAGTAA