mRNA_16309 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A836CJF2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJF2_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.880e-46 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 Query: 1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 210 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI Sbjct: 1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 70
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A7S2C8L4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8L4_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 3.140e-23 Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = 1 Query: 1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKW 198 GCKRAELLAIYD+++QHK LVR+Y+ GF +R++GD F +GDR+ WGGVG LM TD+ ++ KW Sbjct: 59 GCKRAELLAIYDDDKQHKVLVRFYQRIGFKSVRDVGDTFASLGDRLVWGGVGQLMETDLEAWVRKW 124
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A7S2C8H6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8H6_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 8.580e-22 Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = 1 Query: 1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKW 198 GCKRAELLAIYD+++QHK LVR+Y+ GF +R++GD F +GDR+ WGGVG LM TD+ ++ KW Sbjct: 211 GCKRAELLAIYDDDKQHKVLVRFYQRIGFKSVRDVGDTFASLGDRLVWGGVGQLMETDLEAWVRKW 276
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A1Z5KB50_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB50_FISSO) HSP 1 Score: 88.6 bits (218), Expect = 4.170e-20 Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1 Query: 1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKR 204 GCK+AE LAI DEE+QHKRLVRYYR AGF ++ +GDD D+ DR+ WGG GTL+ +I + W R Sbjct: 143 GCKKAEFLAIDDEEKQHKRLVRYYRHAGFQFIKYVGDDIWDVPDRLVWGGCGTLLGANIDELLQFWTR 210
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: R1CMB6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CMB6_EMIHU) HSP 1 Score: 88.2 bits (217), Expect = 6.480e-20 Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1 Query: 10 RAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 210 RA+LLAIYDE QH LVRYYR GF LRE+GD G GD++ WGGVGTLM TD+ F +W ++ Sbjct: 130 RAQLLAIYDEPRQHATLVRYYRRLGFAALREVGDGAGSFGDQLAWGGVGTLMETDVSAFRRRWGASV 196
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A7S2FV87_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FV87_9EUKA) HSP 1 Score: 85.1 bits (209), Expect = 7.840e-20 Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 13 AELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 210 A+LLAI D+E QH+ ++RYYR GF+PLRE+ FG +GDRV WGG GT+M ++ +F KW TI Sbjct: 45 ADLLAIRDDERQHRSILRYYRRLGFSPLREVDGGFGSLGDRVLWGGEGTIMRVELEDFARKWTPTI 110
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: K0TEB6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEB6_THAOC) HSP 1 Score: 87.8 bits (216), Expect = 1.260e-19 Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1 Query: 1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 210 GC + E LAI D E QHKRLVRYYR AGF +R +G++ DIGDR+ WGG GTLM+ ++ + KW R I Sbjct: 159 GCGKIEFLAIDDAEFQHKRLVRYYRTAGFKEVRYVGEELKDIGDRLVWGGCGTLMTENVDKVLRKWTRII 228
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A7S3LDP4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDP4_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 7.640e-19 Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1 Query: 1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKW 198 GCK AE LAI DE+ QHKRLVRYY+ AGF ++ +GDD DI DR+ WGG GTL+ DI + W Sbjct: 171 GCKEAEFLAIDDEDRQHKRLVRYYKTAGFDFIKYVGDDLKDIPDRMVWGGCGTLLRKDISYLLSYW 236
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: D7FJC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC5_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.500e-18 Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKW 198 G +R ELLAI D ++QH RLVRYYRIAGF R++G+D G + DR+TWG GTLM+ +FM +W Sbjct: 215 GARRVELLAIRDNDKQHSRLVRYYRIAGFKAERKVGEDLGSLRDRLTWGAEGTLMAASADDFMRRW 280
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A7S0AW50_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AW50_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.690e-18 Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1 Query: 1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 210 GC AE LAI DEE QHKRLVRYY+ +GF ++ +G+D G+I DR+ WGG GTLM + + KW + + Sbjct: 53 GCVDAEFLAIDDEEYQHKRLVRYYKNSGFKVIKYVGEDIGNIPDRLIWGGCGTLMREKVDVLLEKWTKNL 122 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16309 ID=mRNA_16309|Name=jgi.p|Trimin1|129226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_154:29153..29362+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCTGCAAGCGCGCAGAACTGCTCGCCATCTACGACGAGGAAGAGCAGCAback to top protein sequence of jgi.p|Trimin1|129226 >Trimin1|129226|gw1.154.1.1 ID=Trimin1|129226|gw1.154.1.1|Name=jgi.p|Trimin1|129226|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=70bp GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGback to top mRNA from alignment at Contig_154:29153..29362+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16309 ID=mRNA_16309|Name=jgi.p|Trimin1|129226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_154:29153..29362+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_154:29153..29362+ >mRNA_16309 ID=mRNA_16309|Name=jgi.p|Trimin1|129226|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=210bp|location=Sequence derived from alignment at Contig_154:29153..29362+ (Tribonema minus UTEX_B_3156 )back to top |