mRNA_16309 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129226
Unique NamemRNA_16309
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A836CJF2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJF2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.880e-46
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1
Query:    1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 210
            GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI
Sbjct:    1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 70          
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A7S2C8L4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8L4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.140e-23
Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKW 198
            GCKRAELLAIYD+++QHK LVR+Y+  GF  +R++GD F  +GDR+ WGGVG LM TD+  ++ KW
Sbjct:   59 GCKRAELLAIYDDDKQHKVLVRFYQRIGFKSVRDVGDTFASLGDRLVWGGVGQLMETDLEAWVRKW 124          
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A7S2C8H6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8H6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 8.580e-22
Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKW 198
            GCKRAELLAIYD+++QHK LVR+Y+  GF  +R++GD F  +GDR+ WGGVG LM TD+  ++ KW
Sbjct:  211 GCKRAELLAIYDDDKQHKVLVRFYQRIGFKSVRDVGDTFASLGDRLVWGGVGQLMETDLEAWVRKW 276          
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A1Z5KB50_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB50_FISSO)

HSP 1 Score: 88.6 bits (218), Expect = 4.170e-20
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKR 204
            GCK+AE LAI DEE+QHKRLVRYYR AGF  ++ +GDD  D+ DR+ WGG GTL+  +I   +  W R
Sbjct:  143 GCKKAEFLAIDDEEKQHKRLVRYYRHAGFQFIKYVGDDIWDVPDRLVWGGCGTLLGANIDELLQFWTR 210          
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: R1CMB6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CMB6_EMIHU)

HSP 1 Score: 88.2 bits (217), Expect = 6.480e-20
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   10 RAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 210
            RA+LLAIYDE  QH  LVRYYR  GF  LRE+GD  G  GD++ WGGVGTLM TD+  F  +W  ++
Sbjct:  130 RAQLLAIYDEPRQHATLVRYYRRLGFAALREVGDGAGSFGDQLAWGGVGTLMETDVSAFRRRWGASV 196          
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A7S2FV87_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FV87_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 7.840e-20
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   13 AELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 210
            A+LLAI D+E QH+ ++RYYR  GF+PLRE+   FG +GDRV WGG GT+M  ++ +F  KW  TI
Sbjct:   45 ADLLAIRDDERQHRSILRYYRRLGFSPLREVDGGFGSLGDRVLWGGEGTIMRVELEDFARKWTPTI 110          
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: K0TEB6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEB6_THAOC)

HSP 1 Score: 87.8 bits (216), Expect = 1.260e-19
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 210
            GC + E LAI D E QHKRLVRYYR AGF  +R +G++  DIGDR+ WGG GTLM+ ++   + KW R I
Sbjct:  159 GCGKIEFLAIDDAEFQHKRLVRYYRTAGFKEVRYVGEELKDIGDRLVWGGCGTLMTENVDKVLRKWTRII 228          
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A7S3LDP4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDP4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 7.640e-19
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKW 198
            GCK AE LAI DE+ QHKRLVRYY+ AGF  ++ +GDD  DI DR+ WGG GTL+  DI   +  W
Sbjct:  171 GCKEAEFLAIDDEDRQHKRLVRYYKTAGFDFIKYVGDDLKDIPDRMVWGGCGTLLRKDISYLLSYW 236          
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: D7FJC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.500e-18
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKW 198
            G +R ELLAI D ++QH RLVRYYRIAGF   R++G+D G + DR+TWG  GTLM+    +FM +W
Sbjct:  215 GARRVELLAIRDNDKQHSRLVRYYRIAGFKAERKVGEDLGSLRDRLTWGAEGTLMAASADDFMRRW 280          
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Match: A0A7S0AW50_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AW50_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.690e-18
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGGVGTLMSTDIRNFMLKWKRTI 210
            GC  AE LAI DEE QHKRLVRYY+ +GF  ++ +G+D G+I DR+ WGG GTLM   +   + KW + +
Sbjct:   53 GCVDAEFLAIDDEEYQHKRLVRYYKNSGFKVIKYVGEDIGNIPDRLIWGGCGTLMREKVDVLLEKWTKNL 122          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129226 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJF2_9STRA1.880e-46100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2C8L4_9STRA3.140e-2359.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C8H6_9STRA8.580e-2259.09Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A1Z5KB50_FISSO4.170e-2057.35Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
R1CMB6_EMIHU6.480e-2058.21Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2FV87_9EUKA7.840e-2054.55Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
K0TEB6_THAOC1.260e-1955.71Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3LDP4_9STRA7.640e-1957.58Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
D7FJC5_ECTSI1.500e-1856.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0AW50_9STRA2.690e-1851.43Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_154contigContig_154:29153..29362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129226|gw1.154.1.1
BRITEko00000,ko00001,ko01000,ko03400
KEGG Pathwayko03460,ko05200,ko05202,ko05210,ko05212,ko05213,ko05214,ko05216,ko05217,ko05218,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map03460,map05200,map05202,map05210,map05212,map05213,map05214,map05216,map05217,map05218,map05220,map05222,map05223,map05224,map05225,map05226
KEGG koko:K03511
EC2.7.7.7
DescriptionDNA-directed DNA polymerase activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0389@1|root,KOG2094@2759|Eukaryota
Evalue3.63e-21
Seed ortholog2903.EOD41292
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_005820.1
TranscriptId129548
TrackFilteredModels1
ProteinId129226
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129226gene_16309Tribonema minus UTEX_B_3156 geneContig_154 29153..29362 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16309_1exon_16309_1Tribonema minus UTEX_B_3156 exonContig_154 29153..29362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16309CDS_16309Tribonema minus UTEX_B_3156 CDSContig_154 29153..29362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129226Trimin1|129226|gw1.154.1.1Tribonema minus UTEX_B_3156 polypeptideContig_154 29153..29362 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16309 ID=mRNA_16309|Name=jgi.p|Trimin1|129226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_154:29153..29362+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCTGCAAGCGCGCAGAACTGCTCGCCATCTACGACGAGGAAGAGCAGCA
CAAGCGCCTCGTGCGCTACTACCGCATCGCGGGTTTCACCCCGCTGCGCG
AGATAGGCGACGACTTTGGGGACATAGGGGACAGGGTGACCTGGGGGGGC
GTAGGGACGCTGATGAGCACTGACATCCGCAACTTCATGTTGAAGTGGAA
ACGCACCATC
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protein sequence of jgi.p|Trimin1|129226

>Trimin1|129226|gw1.154.1.1 ID=Trimin1|129226|gw1.154.1.1|Name=jgi.p|Trimin1|129226|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=70bp
GCKRAELLAIYDEEEQHKRLVRYYRIAGFTPLREIGDDFGDIGDRVTWGG
VGTLMSTDIRNFMLKWKRTI
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mRNA from alignment at Contig_154:29153..29362+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16309 ID=mRNA_16309|Name=jgi.p|Trimin1|129226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_154:29153..29362+ (Tribonema minus UTEX_B_3156 )
GGCTGCAAGCGCGCAGAACTGCTCGCCATCTACGACGAGGAAGAGCAGCA CAAGCGCCTCGTGCGCTACTACCGCATCGCGGGTTTCACCCCGCTGCGCG AGATAGGCGACGACTTTGGGGACATAGGGGACAGGGTGACCTGGGGGGGC GTAGGGACGCTGATGAGCACTGACATCCGCAACTTCATGTTGAAGTGGAA ACGCACCATC
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Coding sequence (CDS) from alignment at Contig_154:29153..29362+

>mRNA_16309 ID=mRNA_16309|Name=jgi.p|Trimin1|129226|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=210bp|location=Sequence derived from alignment at Contig_154:29153..29362+ (Tribonema minus UTEX_B_3156 )
GGCTGCAAGCGCGCAGAACTGCTCGCCATCTACGACGAGGAAGAGCAGCA
CAAGCGCCTCGTGCGCTACTACCGCATCGCGGGTTTCACCCCGCTGCGCG
AGATAGGCGACGACTTTGGGGACATAGGGGACAGGGTGACCTGGGGGGGC
GTAGGGACGCTGATGAGCACTGACATCCGCAACTTCATGTTGAAGTGGAA
ACGCACCATC
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