mRNA_16256 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|179550
Unique NamemRNA_16256
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|179550 vs. uniprot
Match: A0A835Z817_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z817_9STRA)

HSP 1 Score: 399 bits (1025), Expect = 1.980e-139
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 
Query:  145 PAAVTLIERSDLRCALCNEGHSPDTPLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHRRGGGGSIAAIRAQQVSACFWSAAAGVRCAQHVYIYVRVLARGCFVLC 708
            PAAVTLIERSDLRCALCNEGHSPDTPLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHRRGGGGSIAAIRAQQVSACFWSAAAGVRCAQHVYIYVRVLARGCFVLC
Sbjct:   49 PAAVTLIERSDLRCALCNEGHSPDTPLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHRRGGGGSIAAIRAQQVSACFWSAAAGVRCAQHVYIYVRVLARGCFVLC 236
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BLAST of jgi.p|Trimin1|179550 vs. uniprot
Match: A0A4D9DDC7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDC7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.540e-31
Identity = 60/135 (44.44%), Postives = 76/135 (56.30%), Query Frame = 1 
Query:  163 IERSDLRCALCNEGHSPDTPLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHR 567
            ++R  L CALC +GHS   PLPGP++G HP       +W HDDCA WSPQ F              G+    W+N+ VEVRRGRK +C  C  +GATIGC ++ C  S+H PCA  TGW         F+C +HR
Sbjct: 1377 VDRRTLLCALCGKGHSEAQPLPGPVLGSHPLKIRDRPVWVHDDCAHWSPQTF-------------VGQEDGRWYNILVEVRRGRKTKCKGCNKLGATIGCYVRTCSRSYHYPCAVATGWTFSPEVY--FHCEKHR 1496
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BLAST of jgi.p|Trimin1|179550 vs. uniprot
Match: A0A7R9UGP6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGP6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.470e-30
Identity = 66/144 (45.83%), Postives = 84/144 (58.33%), Query Frame = 1 
Query:  145 PAAVTLIERSDLRCALCNEGHSPDTPLPGPLVGVHPFVFGR-ERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHRRG 573
            P   T ++R DL CA C+ GH    PLPGP +G HP + G  ERLWAHD CA+ SPQAF+              E+G L+ N+  E+RRGR + C LC   GAT+GC  + CR ++H+ CA  TGWD   T+   F CP  RRG
Sbjct: 1157 PNPDTWVKRDDLVCAFCHRGHLDGWPLPGPTLGPHPLLAGNGERLWAHDQCALLSPQAFQ-------------DEAGNLY-NIMKEIRRGRVMDCVLCNQRGATVGCYRRSCRGNYHVHCAMETGWD--FTSGEPFRCPNDRRG 1284
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BLAST of jgi.p|Trimin1|179550 vs. uniprot
Match: A0A8K1CCN8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN8_PYTOL)

HSP 1 Score: 107 bits (267), Expect = 6.240e-23
Identity = 54/129 (41.86%), Postives = 68/129 (52.71%), Query Frame = 1 
Query:  184 CALCNEGHSPDT-PLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHR 567
            CA C +G       LPG  +GVHP +FG +RL+ HD CAI SP  F+                G  W+NL+ E+RRGR ++C  C   GAT+GC L+ C  SFH  CA  TGW  +      FYC  HR
Sbjct: 1169 CAFCQQGDDGGVLKLPGEEMGVHPLIFGTQRLFVHDQCAIASPLCFK---------------RGGKWYNLSKEIRRGRSIQCFGCKRRGATLGCTLERCPKSFHWKCAMETGWSANSIH---FYCSEHR 1279
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BLAST of jgi.p|Trimin1|179550 vs. uniprot
Match: T0S0U0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S0U0_SAPDV)

HSP 1 Score: 107 bits (266), Expect = 8.360e-23
Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 1 
Query:  172 SDLRCALCNEGHSPDTPLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRH 564
            + + C  C  G      LPG  +GVHP V G +R++ HD CAI SPQ+F               + G  W+N+A E+RRGR L+C LCG  GAT+GC    C  + H  CA  TGW  +DT    +YC  H
Sbjct: 1090 AQILCGFCGRGDVAGMTLPGETLGVHPLVNGSQRVFVHDPCAITSPQSFY--------------DDGH-WYNIAKELRRGRLLKCNLCGQKGATLGCNYDACIVTMHFHCALATGWKDEDT----YYCGDH 1201
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BLAST of jgi.p|Trimin1|179550 vs. uniprot
Match: A0A024GCR1_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GCR1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.150e-22
Identity = 61/153 (39.87%), Postives = 79/153 (51.63%), Query Frame = 1 
Query:  184 CALCNEGHSPD---TPLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHRR---GGGGSIAAIRAQQVSACF 624
            CA C  GHS D     LP   +GVHP + G +RL+ H+ CAI SP  F                   LW+N+A E+RRGRKL C++C   GATIGC +  CR  +H  CA T GW  + T    FYCP H +      G+   ++A+ VS  F
Sbjct: 1251 CAFC--GHSDDGGIMKLPSESMGVHPLINGSQRLFVHEQCAIASPLCFH---------------RDGLWYNVAKEIRRGRKLECSICHIKGATIGCCVPECRSVYHWKCALTCGWSLNQTE---FYCPSHEQHDDNSAGTRLTVQAESVSKRF 1383
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BLAST of jgi.p|Trimin1|179550 vs. uniprot
Match: F0WUE4_9STRA (Uncharacterized protein AlNc14C271G9965 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WUE4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.810e-21
Identity = 55/130 (42.31%), Postives = 69/130 (53.08%), Query Frame = 1 
Query:  184 CALCNEGHSPD---TPLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRH 564
            CA C  GHS D     LP   +GVHP + G +R++ HD CAI SP  F                  E W+N+A E+RRGRKL C++C   GATIGC +  CR  +H  CA T GW  + +    FYCP H
Sbjct: 1279 CAFC--GHSDDGGIMKLPSESMGVHPLINGCQRVFVHDQCAIASPLCFH---------------RDESWYNVAKEIRRGRKLECSVCHNKGATIGCCVPECRSVYHWKCALTCGWSLNKSQ---FYCPSH 1388
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BLAST of jgi.p|Trimin1|179550 vs. uniprot
Match: G4YIG9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIG9_PHYSP)

HSP 1 Score: 102 bits (253), Expect = 4.480e-21
Identity = 57/144 (39.58%), Postives = 72/144 (50.00%), Query Frame = 1 
Query:  148 AAVTLIERSD---LRCALCNEGHSPDT-PLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHR 567
            AA    E SD   + CA C  G       LPG  +G HP ++G +R++ HD CAI SP  F                 G  W+N+A E+RRGR L C  C   GATIGC +  CR+S+H  CA T GW  D      F+CP H+
Sbjct:  976 AAPVPAESSDEALIPCAFCGVGDDDAMLKLPGDGMGAHPLIYGVQRVFVHDQCAIASPLCFN--------------RDGN-WYNVAREIRRGRSLTCVACNKRGATIGCTIAACRNSYHWKCAITYGWSVDQMH---FFCPTHQ 1101
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BLAST of jgi.p|Trimin1|179550 vs. uniprot
Match: V9F004_PHYPR (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=V9F004_PHYPR)

HSP 1 Score: 101 bits (252), Expect = 6.180e-21
Identity = 52/129 (40.31%), Postives = 66/129 (51.16%), Query Frame = 1 
Query:  184 CALCNEGHSPDT-PLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHR 567
            CA C  G+      LPG  +GVHP +FG +R++ HD CAI SP  F                 G  W+N+  E+RRGR L C  C   GATIGC +  CR+S+H  CA   GW  D      F+CP H+
Sbjct: 1314 CAFCGVGNDDGMLKLPGDGMGVHPLIFGVQRVFVHDQCAIASPLCFN--------------RDGN-WYNVTREIRRGRSLSCVACTKRGATIGCTISACRNSYHWKCAINLGWSVDQMH---FFCPAHQ 1424
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BLAST of jgi.p|Trimin1|179550 vs. uniprot
Match: A0A662Y5I9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5I9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.140e-20
Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:  166 ERSDLRCALCNEGHSPDT-PLPGPLVGVHPFVFGRERLWAHDDCAIWSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGATIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHR 567
            E + + CA C  G       LPG  +GVHP ++G +RL+ HD CAI SP  F                 G  W+N+  E+RRGR L C  C   GAT+GC +  CR+S+H  CA   GW  D      F+CP H+
Sbjct: 1259 EEALIPCAFCGVGDDGAMLKLPGDGMGVHPLIYGTQRLFVHDQCAIASPLCFN---------------RGGSWYNVTKEIRRGRSLDCVGCHKRGATVGCTVPSCRNSYHWKCAINCGWSMDQIQ---FFCPDHQ 1375
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|179550 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z817_9STRA1.980e-139100.00PHD-type domain-containing protein n=1 Tax=Tribone... [more]
A0A4D9DDC7_9STRA2.540e-3144.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7R9UGP6_9STRA5.470e-3045.83Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8K1CCN8_PYTOL6.240e-2341.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
T0S0U0_SAPDV8.360e-2340.46Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A024GCR1_9STRA1.150e-2239.87Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
F0WUE4_9STRA1.810e-2142.31Uncharacterized protein AlNc14C271G9965 n=1 Tax=Al... [more]
G4YIG9_PHYSP4.480e-2139.58Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
V9F004_PHYPR6.180e-2140.31Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A662Y5I9_9STRA1.140e-2038.52Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_196contigContig_196:170006..170716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|179550|e_gw1.196.24.1
BRITEko00000,ko04121
KEGG koko:K11798
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0008150,GO:0008360,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022603,GO:0022604,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0065008,GO:0071840,GO:0080090,GO:1903506,GO:2000112,GO:2001141
DescriptionDNA binding
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2319@1|root,COG2940@1|root,KOG0644@2759|Eukaryota,KOG1084@2759|Eukaryota
Evalue1.37e-23
Seed ortholog112098.XP_008610458.1
Hectar predicted targeting categoryother localisation
TranscriptId179872
TrackFilteredModels1
ProteinId179550
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179550gene_16256Tribonema minus UTEX_B_3156 geneContig_196 170006..170716 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16256_1exon_16256_1Tribonema minus UTEX_B_3156 exonContig_196 170006..170716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16256CDS_16256Tribonema minus UTEX_B_3156 CDSContig_196 170006..170716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179550Trimin1|179550|e_gw1.196.24.1Tribonema minus UTEX_B_3156 polypeptideContig_196 170006..170716 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16256 ID=mRNA_16256|Name=jgi.p|Trimin1|179550|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_196:170006..170716- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGATGCAGCGTCAGCAGCTGCAGCGCCATCAGCAGCAGCAGCAGT
GACACCACCACCACAAGCAGCAGCAGCACCAGCAGCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAAGCGCCGCCGCGGCAGCAGCGCCCGCA
GCAGTCACCCTTATCGAGCGCAGCGACCTGCGCTGCGCGCTGTGCAACGA
GGGGCACTCGCCGGACACGCCGCTGCCAGGGCCACTCGTCGGCGTGCACC
CCTTTGTGTTCGGTCGCGAGCGCCTCTGGGCGCACGACGACTGCGCCATC
TGGTCGCCGCAGGCGTTCCGCGCGGCGCCGGCGGGTGCAGCGGGACTGGG
GCTAGGGGCAGGAGAGAGCGGTGAGCTGTGGTGGAACCTGGCGGTGGAGG
TGCGGCGGGGGCGCAAGCTGCGCTGCGCGCTGTGCGGCACGATGGGAGCG
ACGATTGGGTGCCAGCTGCAGGTTTGCCGGCACTCGTTCCACCTGCCGTG
CGCGCGGACTACGGGCTGGGATGGTGATGATACCGCCGTGGGTGCCTTCT
ACTGCCCCAGGCACCGCCGCGGCGGCGGCGGCAGCATTGCGGCGATACGC
GCGCAGCAGGTGAGCGCGTGTTTTTGGAGTGCTGCTGCTGGTGTCAGATG
TGCGCAGCATGTGTACATATATGTGCGCGTACTTGCAAGAGGATGTTTTG
TGTTGTGCTGA
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protein sequence of jgi.p|Trimin1|179550

>Trimin1|179550|e_gw1.196.24.1 ID=Trimin1|179550|e_gw1.196.24.1|Name=jgi.p|Trimin1|179550|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=237bp
MADAASAAAAPSAAAAVTPPPQAAAAPAAPAAAAAAAAAAASAAAAAAPA
AVTLIERSDLRCALCNEGHSPDTPLPGPLVGVHPFVFGRERLWAHDDCAI
WSPQAFRAAPAGAAGLGLGAGESGELWWNLAVEVRRGRKLRCALCGTMGA
TIGCQLQVCRHSFHLPCARTTGWDGDDTAVGAFYCPRHRRGGGGSIAAIR
AQQVSACFWSAAAGVRCAQHVYIYVRVLARGCFVLC*
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mRNA from alignment at Contig_196:170006..170716-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16256 ID=mRNA_16256|Name=jgi.p|Trimin1|179550|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=711bp|location=Sequence derived from alignment at Contig_196:170006..170716- (Tribonema minus UTEX_B_3156 )
ATGGCAGATGCAGCGTCAGCAGCTGCAGCGCCATCAGCAGCAGCAGCAGT
GACACCACCACCACAAGCAGCAGCAGCACCAGCAGCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAAGCGCCGCCGCGGCAGCAGCGCCCGCA
GCAGTCACCCTTATCGAGCGCAGCGACCTGCGCTGCGCGCTGTGCAACGA
GGGGCACTCGCCGGACACGCCGCTGCCAGGGCCACTCGTCGGCGTGCACC
CCTTTGTGTTCGGTCGCGAGCGCCTCTGGGCGCACGACGACTGCGCCATC
TGGTCGCCGCAGGCGTTCCGCGCGGCGCCGGCGGGTGCAGCGGGACTGGG
GCTAGGGGCAGGAGAGAGCGGTGAGCTGTGGTGGAACCTGGCGGTGGAGG
TGCGGCGGGGGCGCAAGCTGCGCTGCGCGCTGTGCGGCACGATGGGAGCG
ACGATTGGGTGCCAGCTGCAGGTTTGCCGGCACTCGTTCCACCTGCCGTG
CGCGCGGACTACGGGCTGGGATGGTGATGATACCGCCGTGGGTGCCTTCT
ACTGCCCCAGGCACCGCCGCGGCGGCGGCGGCAGCATTGCGGCGATACGC
GCGCAGCAGGTGAGCGCGTGTTTTTGGAGTGCTGCTGCTGGTGTCAGATG
TGCGCAGCATGTGTACATATATGTGCGCGTACTTGCAAGAGGATGTTTTG
TGTTGTGCTGA
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Coding sequence (CDS) from alignment at Contig_196:170006..170716-

>mRNA_16256 ID=mRNA_16256|Name=jgi.p|Trimin1|179550|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=711bp|location=Sequence derived from alignment at Contig_196:170006..170716- (Tribonema minus UTEX_B_3156 )
ATGGCAGATGCAGCGTCAGCAGCTGCAGCGCCATCAGCAGCAGCAGCAGT
GACACCACCACCACAAGCAGCAGCAGCACCAGCAGCACCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAAGCGCCGCCGCGGCAGCAGCGCCCGCA
GCAGTCACCCTTATCGAGCGCAGCGACCTGCGCTGCGCGCTGTGCAACGA
GGGGCACTCGCCGGACACGCCGCTGCCAGGGCCACTCGTCGGCGTGCACC
CCTTTGTGTTCGGTCGCGAGCGCCTCTGGGCGCACGACGACTGCGCCATC
TGGTCGCCGCAGGCGTTCCGCGCGGCGCCGGCGGGTGCAGCGGGACTGGG
GCTAGGGGCAGGAGAGAGCGGTGAGCTGTGGTGGAACCTGGCGGTGGAGG
TGCGGCGGGGGCGCAAGCTGCGCTGCGCGCTGTGCGGCACGATGGGAGCG
ACGATTGGGTGCCAGCTGCAGGTTTGCCGGCACTCGTTCCACCTGCCGTG
CGCGCGGACTACGGGCTGGGATGGTGATGATACCGCCGTGGGTGCCTTCT
ACTGCCCCAGGCACCGCCGCGGCGGCGGCGGCAGCATTGCGGCGATACGC
GCGCAGCAGGTGAGCGCGTGTTTTTGGAGTGCTGCTGCTGGTGTCAGATG
TGCGCAGCATGTGTACATATATGTGCGCGTACTTGCAAGAGGATGTTTTG
TGTTGTGCTGA
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