mRNA_16244 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: A0A836CIL9_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL9_9STRA) HSP 1 Score: 197 bits (502), Expect = 1.550e-63 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 2
Query: 50 MDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
MDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL
Sbjct: 1 MDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 101
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: D8LC00_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC00_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.060e-29 Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 2
Query: 41 SANMDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
S ++DA + V VV+YSK+YCP+C KAK+AL+ + A +E IELD+V NG+ IQ AL+ +TG +VP VF+GG IGGGDDT R Q++GEL+ VTA G +
Sbjct: 2 SEHVDA-VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDEVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 104
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: A0A6F9DEC3_9ASCI (Monothiol glutaredoxin-S6-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DEC3_9ASCI) HSP 1 Score: 107 bits (267), Expect = 8.600e-28 Identity = 48/97 (49.48%), Postives = 71/97 (73.20%), Query Frame = 2
Query: 44 ANMDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLV 334
A+ D +IKA + +V+YSK+YCPYC AK AL+ + A F+AIELD++++GA+ Q AL+ +TG +VPQVF+GGKY+GGG D + +G+L +V
Sbjct: 2 ASYDQKIKAAINGDKIVMYSKTYCPYCKMAKSALKGVNATFKAIELDEMNDGADYQNALQAITGVRSVPQVFIGGKYVGGGTDMKKLHDSGKLATMV 98
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: A0A2V0NRF1_9CHLO (Glutaredoxin domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NRF1_9CHLO) HSP 1 Score: 107 bits (267), Expect = 9.380e-28 Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 2
Query: 56 AQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
A +K + + VV++SK+YCPYC KAKRALQ + +F +ELDQ +G IQ AL +TG+ +VP+VFV GK+IGGGDDTA K +GEL L+ G L
Sbjct: 4 AFVKDTIKANKVVVFSKTYCPYCVKAKRALQQLTTNFHVVELDQRGDGDAIQDALLDLTGARSVPRVFVAGKFIGGGDDTAAKAASGELKTLLADVGAL 102
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: UPI0002657DC2 (glutaredoxin n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002657DC2) HSP 1 Score: 107 bits (267), Expect = 1.670e-27 Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 2
Query: 56 AQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAG 346
A + K+ ++P+V++SK+ CPYC KAKR L+ KA ++ IEL+Q +G IQ LKG+TG+ +VP+VF+GGK IGGGDDTAR G+L L+ AG
Sbjct: 19 AFVNQKITASPLVVFSKTTCPYCDKAKRILEKYKAQYDLIELNQREDGQAIQDVLKGITGARSVPRVFIGGKCIGGGDDTARLDSEGKLESLLKEAG 115
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: H3G9V5_PHYRM (Glutaredoxin domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3G9V5_PHYRM) HSP 1 Score: 106 bits (265), Expect = 2.000e-27 Identity = 49/97 (50.52%), Postives = 70/97 (72.16%), Query Frame = 2
Query: 62 IKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
++A++A++PVV+YSKSYCPYC K K L + A FE +ELDQ++ G+E Q AL+ +TG STVP VFVGG+ IGG D + ++G+L L+ +G L
Sbjct: 8 VEAQIAASPVVVYSKSYCPYCTKTKTLLTELGAKFEVVELDQINGGSEQQDALEDLTGQSTVPNVFVGGQSIGGNSDVRKLHKSGDLEPLLKHSGAL 104
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: UPI0009019487 (glutaredoxin-C6-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009019487) HSP 1 Score: 106 bits (265), Expect = 2.120e-27 Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 2
Query: 56 AQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
A+ K VAS PVV++SKSYCP+C K+ L + A F+AIELD S+G+EIQ AL TG TVP VF+GGK+IGG D T Q G+LV L+T AG L
Sbjct: 4 AKAKEIVASNPVVVFSKSYCPFCVDVKKLLTQLGASFKAIELDTESDGSEIQSALAEWTGQRTVPNVFIGGKHIGGCDKTIAVNQEGKLVPLLTEAGAL 102
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: A0A7S1B3V4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3V4_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.380e-27 Identity = 51/105 (48.57%), Postives = 76/105 (72.38%), Query Frame = 2
Query: 41 SANMDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKA-HFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
S +M + I+ + S VV++SK+YCP+C KAKR+L + +F+++ELDQ+++G+ IQ L +TG TVP VF+GGK IGGGDDTA +Q+G+L ++ AAG L
Sbjct: 6 SKDMSSYIQDTIGSNKVVVFSKTYCPFCTKAKRSLANVGCTNFKSVELDQMADGSSIQSGLLSLTGQRTVPNVFIGGKSIGGGDDTAALEQSGKLKTMLQAAGAL 110
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: F6GSM3_VITVI (Glutaredoxin domain-containing protein n=2 Tax=Vitis TaxID=3603 RepID=F6GSM3_VITVI) HSP 1 Score: 107 bits (266), Expect = 2.500e-27 Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 2
Query: 56 AQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
A+ K V+STPVV++SK+YC YC + K+ L +KA + IELDQ S+GAEIQ AL+ TG STVP VF+GGK++GG D K Q G+LV L+ AG +
Sbjct: 19 AKAKEIVSSTPVVVFSKTYCGYCKRVKQLLSQLKATHKTIELDQESDGAEIQSALREWTGQSTVPNVFIGGKHMGGCDSVMEKHQEGKLVPLLKEAGAI 117
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: H3G8S4_PHYRM (Glutaredoxin domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3G8S4_PHYRM) HSP 1 Score: 105 bits (263), Expect = 4.020e-27 Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 2
Query: 62 IKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
++AK+A++PVV+YSKSYCPYCAK K L + A ++ IELDQ++ G+E Q AL+ ++G STVP VFVGGK IGG D + + G L L+ G L
Sbjct: 8 VEAKIAASPVVVYSKSYCPYCAKTKTLLTQLGAKYDVIELDQIAGGSEQQDALEQISGQSTVPNVFVGGKSIGGNSDVQKLHKAGNLESLLEQNGAL 104 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16244 ID=mRNA_16244|Name=jgi.p|Trimin1|36602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_196:113853..114874- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGACACACACACTACACCAGTTTCGACGCACAGGAGACCTTCAGCAAACAback to top protein sequence of jgi.p|Trimin1|36602 >Trimin1|36602|CE36601_329 ID=Trimin1|36602|CE36601_329|Name=jgi.p|Trimin1|36602|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=102bp MDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGback to top mRNA from alignment at Contig_196:113853..114874- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16244 ID=mRNA_16244|Name=jgi.p|Trimin1|36602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1022bp|location=Sequence derived from alignment at Contig_196:113853..114874- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_196:113853..114874- >mRNA_16244 ID=mRNA_16244|Name=jgi.p|Trimin1|36602|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=306bp|location=Sequence derived from alignment at Contig_196:113853..114874- (Tribonema minus UTEX_B_3156 )back to top |