mRNA_16244 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|36602
Unique NamemRNA_16244
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: A0A836CIL9_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL9_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.550e-63
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 2
Query:   50 MDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
            MDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL
Sbjct:    1 MDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 101          
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: D8LC00_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC00_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.060e-29
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 2
Query:   41 SANMDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
            S ++DA +   V    VV+YSK+YCP+C KAK+AL+ + A +E IELD+V NG+ IQ AL+ +TG  +VP VF+GG  IGGGDDT R Q++GEL+  VTA G +
Sbjct:    2 SEHVDA-VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDEVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 104          
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: A0A6F9DEC3_9ASCI (Monothiol glutaredoxin-S6-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DEC3_9ASCI)

HSP 1 Score: 107 bits (267), Expect = 8.600e-28
Identity = 48/97 (49.48%), Postives = 71/97 (73.20%), Query Frame = 2
Query:   44 ANMDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLV 334
            A+ D +IKA +    +V+YSK+YCPYC  AK AL+ + A F+AIELD++++GA+ Q AL+ +TG  +VPQVF+GGKY+GGG D  +   +G+L  +V
Sbjct:    2 ASYDQKIKAAINGDKIVMYSKTYCPYCKMAKSALKGVNATFKAIELDEMNDGADYQNALQAITGVRSVPQVFIGGKYVGGGTDMKKLHDSGKLATMV 98          
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: A0A2V0NRF1_9CHLO (Glutaredoxin domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NRF1_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 9.380e-28
Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 2
Query:   56 AQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
            A +K  + +  VV++SK+YCPYC KAKRALQ +  +F  +ELDQ  +G  IQ AL  +TG+ +VP+VFV GK+IGGGDDTA K  +GEL  L+   G L
Sbjct:    4 AFVKDTIKANKVVVFSKTYCPYCVKAKRALQQLTTNFHVVELDQRGDGDAIQDALLDLTGARSVPRVFVAGKFIGGGDDTAAKAASGELKTLLADVGAL 102          
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: UPI0002657DC2 (glutaredoxin n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002657DC2)

HSP 1 Score: 107 bits (267), Expect = 1.670e-27
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 2
Query:   56 AQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAG 346
            A +  K+ ++P+V++SK+ CPYC KAKR L+  KA ++ IEL+Q  +G  IQ  LKG+TG+ +VP+VF+GGK IGGGDDTAR    G+L  L+  AG
Sbjct:   19 AFVNQKITASPLVVFSKTTCPYCDKAKRILEKYKAQYDLIELNQREDGQAIQDVLKGITGARSVPRVFIGGKCIGGGDDTARLDSEGKLESLLKEAG 115          
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: H3G9V5_PHYRM (Glutaredoxin domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3G9V5_PHYRM)

HSP 1 Score: 106 bits (265), Expect = 2.000e-27
Identity = 49/97 (50.52%), Postives = 70/97 (72.16%), Query Frame = 2
Query:   62 IKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
            ++A++A++PVV+YSKSYCPYC K K  L  + A FE +ELDQ++ G+E Q AL+ +TG STVP VFVGG+ IGG  D  +  ++G+L  L+  +G L
Sbjct:    8 VEAQIAASPVVVYSKSYCPYCTKTKTLLTELGAKFEVVELDQINGGSEQQDALEDLTGQSTVPNVFVGGQSIGGNSDVRKLHKSGDLEPLLKHSGAL 104          
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: UPI0009019487 (glutaredoxin-C6-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009019487)

HSP 1 Score: 106 bits (265), Expect = 2.120e-27
Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 2
Query:   56 AQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
            A+ K  VAS PVV++SKSYCP+C   K+ L  + A F+AIELD  S+G+EIQ AL   TG  TVP VF+GGK+IGG D T    Q G+LV L+T AG L
Sbjct:    4 AKAKEIVASNPVVVFSKSYCPFCVDVKKLLTQLGASFKAIELDTESDGSEIQSALAEWTGQRTVPNVFIGGKHIGGCDKTIAVNQEGKLVPLLTEAGAL 102          
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: A0A7S1B3V4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3V4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.380e-27
Identity = 51/105 (48.57%), Postives = 76/105 (72.38%), Query Frame = 2
Query:   41 SANMDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKA-HFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
            S +M + I+  + S  VV++SK+YCP+C KAKR+L  +   +F+++ELDQ+++G+ IQ  L  +TG  TVP VF+GGK IGGGDDTA  +Q+G+L  ++ AAG L
Sbjct:    6 SKDMSSYIQDTIGSNKVVVFSKTYCPFCTKAKRSLANVGCTNFKSVELDQMADGSSIQSGLLSLTGQRTVPNVFIGGKSIGGGDDTAALEQSGKLKTMLQAAGAL 110          
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: F6GSM3_VITVI (Glutaredoxin domain-containing protein n=2 Tax=Vitis TaxID=3603 RepID=F6GSM3_VITVI)

HSP 1 Score: 107 bits (266), Expect = 2.500e-27
Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 2
Query:   56 AQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
            A+ K  V+STPVV++SK+YC YC + K+ L  +KA  + IELDQ S+GAEIQ AL+  TG STVP VF+GGK++GG D    K Q G+LV L+  AG +
Sbjct:   19 AKAKEIVSSTPVVVFSKTYCGYCKRVKQLLSQLKATHKTIELDQESDGAEIQSALREWTGQSTVPNVFIGGKHMGGCDSVMEKHQEGKLVPLLKEAGAI 117          
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Match: H3G8S4_PHYRM (Glutaredoxin domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3G8S4_PHYRM)

HSP 1 Score: 105 bits (263), Expect = 4.020e-27
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 2
Query:   62 IKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 352
            ++AK+A++PVV+YSKSYCPYCAK K  L  + A ++ IELDQ++ G+E Q AL+ ++G STVP VFVGGK IGG  D  +  + G L  L+   G L
Sbjct:    8 VEAKIAASPVVVYSKSYCPYCAKTKTLLTQLGAKYDVIELDQIAGGSEQQDALEQISGQSTVPNVFVGGKSIGGNSDVQKLHKAGNLESLLEQNGAL 104          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|36602 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIL9_9STRA1.550e-63100.00Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
D8LC00_ECTSI1.060e-2952.88Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A6F9DEC3_9ASCI8.600e-2849.48Monothiol glutaredoxin-S6-like n=1 Tax=Phallusia m... [more]
A0A2V0NRF1_9CHLO9.380e-2852.53Glutaredoxin domain-containing protein n=1 Tax=Rap... [more]
UPI0002657DC21.670e-2751.55glutaredoxin n=1 Tax=Galendromus occidentalis TaxI... [more]
H3G9V5_PHYRM2.000e-2750.52Glutaredoxin domain-containing protein n=20 Tax=Ph... [more]
UPI00090194872.120e-2755.56glutaredoxin-C6-like n=2 Tax=Ipomoea TaxID=4119 Re... [more]
A0A7S1B3V4_9STRA2.380e-2748.57Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
F6GSM3_VITVI2.500e-2753.54Glutaredoxin domain-containing protein n=2 Tax=Vit... [more]
H3G8S4_PHYRM4.020e-2751.55Glutaredoxin domain-containing protein n=5 Tax=Phy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_196contigContig_196:113853..114874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|36602|CE36601_329
DescriptionGlutaredoxin. Source PGD
COG categoryO
Max annot lvl121069|Pythiales
EggNOG OGsCOG0695@1|root,KOG1752@2759|Eukaryota,1MHP3@121069|Pythiales
Evalue1.68e-32
Seed ortholog42099.EPrPV00000021772
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-20_003920.1
TranscriptId36924
TrackFilteredModels1
ProteinId36602
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|36602gene_16244Tribonema minus UTEX_B_3156 geneContig_196 113853..114874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|36602Trimin1|36602|CE36601_329Tribonema minus UTEX_B_3156 polypeptideContig_196 113900..114825 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16244_3exon_16244_3Tribonema minus UTEX_B_3156 exonContig_196 113853..114135 -
exon_16244_2exon_16244_2Tribonema minus UTEX_B_3156 exonContig_196 114622..114688 -
exon_16244_1exon_16244_1Tribonema minus UTEX_B_3156 exonContig_196 114823..114874 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16244UTR3_16244Tribonema minus UTEX_B_3156 three_prime_UTRContig_196 113853..113899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16244CDS_16244Tribonema minus UTEX_B_3156 CDSContig_196 114823..114825 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_16244UTR5_16244Tribonema minus UTEX_B_3156 five_prime_UTRContig_196 114826..114874 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16244 ID=mRNA_16244|Name=jgi.p|Trimin1|36602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_196:113853..114874- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGACACACACACTACACCAGTTTCGACGCACAGGAGACCTTCAGCAAACA
TGGACGCCCAGATCAAAGCGAAGGTGGCAAGCACGCCCGTGGTCATCTAC
AGCAAGTCGTACTGCCCATACTGCGCGAAGGCCAAGCGCGCATTGCAAGC
CATCAAGGCGCATTTTGAGGCCATTGAACTGGACCAGGTCTCCAACGGTG
CCGAAATCCAGCAGGCTCTCAAGGGTGTCACTGGTTCCAGCACAGTCCCG
CAGGTCTTTGTGGGGGGGAAGTACATAGGCGGCGGTGATGACACCGCGCG
GAAGCAGCAGAACGGAGAGCTGGTGCAGCTGGTCACAGCGGCGGGAGGGC
TCTAAGTTGCAGACGCACCAGCATCACAGAACGGATGTAACATGATAGGC
GG
back to top

protein sequence of jgi.p|Trimin1|36602

>Trimin1|36602|CE36601_329 ID=Trimin1|36602|CE36601_329|Name=jgi.p|Trimin1|36602|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=102bp
MDAQIKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNG
AEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGG
L*
back to top

mRNA from alignment at Contig_196:113853..114874-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16244 ID=mRNA_16244|Name=jgi.p|Trimin1|36602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1022bp|location=Sequence derived from alignment at Contig_196:113853..114874- (Tribonema minus UTEX_B_3156 )
GGACACACACACTACACCAGTTTCGACGCACAGGAGACCTTCAGCAAACA TGGTGAGTGTAGCGCTGCAGCTGGGCGAGCTTGCAGGCTGTTGTGTGGAG TTGTACGATCAACTCAGAACGCTGTTGATTGATTTGACCCTAGATGCATT TCTGACAGCACACATGCTGCTCATGATCCTTGAAAGGACGCCCAGATCAA AGCGAAGGTGGCAAGCACGCCCGTGGTCATCTACAGCAAGTCGTACTGCC CATGTAAGTCGAGCTTCTCACGCTGTGGCGCGAGAGCTCTGTGCTGTGGT TGTGGATGTCTTTCGGCCTGTTGTTAGTCACCAACACGTCTGTGTCCTTG TCGGCAGCTCCTAGTTGCATTGACTCTGATGTGCTTCTCGTTTGCAGTGA CAAGCGCACGAGCTGGGTGCTGTATGTGTAGAGTGTCCGACGTTGCGCTA GCTCAAAACATGGATAGTTTCAATAGTCAATCCTAGACTCAGGAATCGTA GTATCATGACTTGTATTCGCTGTGCATGCCACGGCAGCTAGCAAAGTATG CATAAGATTCTCAAAGTGTTTATTGGCAATTGAAGCACTGCACTGTGCTC TGACAAGGCAGCAGCTAGCGAATGTAGTGAGCGATTCGCATCAGCGGGAA ACCCTCAGCACTATTGCCAATGTCTGCATAATCAAGCTGCTGGTGACAAC AGCTCATCTCTCCACCCTTGTTATCTGCACCACTCACAGACTGCGCGAAG GCCAAGCGCGCATTGCAAGCCATCAAGGCGCATTTTGAGGCCATTGAACT GGACCAGGTCTCCAACGGTGCCGAAATCCAGCAGGCTCTCAAGGGTGTCA CTGGTTCCAGCACAGTCCCGCAGGTCTTTGTGGGGGGGAAGTACATAGGC GGCGGTGATGACACCGCGCGGAAGCAGCAGAACGGAGAGCTGGTGCAGCT GGTCACAGCGGCGGGAGGGCTCTAAGTTGCAGACGCACCAGCATCACAGA ACGGATGTAACATGATAGGCGG
back to top

Coding sequence (CDS) from alignment at Contig_196:113853..114874-

>mRNA_16244 ID=mRNA_16244|Name=jgi.p|Trimin1|36602|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=306bp|location=Sequence derived from alignment at Contig_196:113853..114874- (Tribonema minus UTEX_B_3156 )
ATGGACGCCCAGATCAAAGCGAAGGTGGCAAGCACGCCCGTGGTCATCTA
CAGCAAGTCGTACTGCCCATACTGCGCGAAGGCCAAGCGCGCATTGCAAG
CCATCAAGGCGCATTTTGAGGCCATTGAACTGGACCAGGTCTCCAACGGT
GCCGAAATCCAGCAGGCTCTCAAGGGTGTCACTGGTTCCAGCACAGTCCC
GCAGGTCTTTGTGGGGGGGAAGTACATAGGCGGCGGTGATGACACCGCGC
GGAAGCAGCAGAACGGAGAGCTGGTGCAGCTGGTCACAGCGGCGGGAGGG
CTCTAA
back to top