mRNA_16216 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177348
Unique NamemRNA_16216
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177348 vs. uniprot
Match: A0A835Z7A3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A3_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.590e-52
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1 
Query:    1 MCEILERGDEERAPLAPLRQQRCPHGKERYFCRECGGGTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRRTRXXXXXXXXXXXXXQLRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLALTTVCAHGRKHQCKACGGKPIKNAAAEQQSVDATVAAVAEVGDGPGLAAGDAMIITADAL 729
            MCEILERGDEERAPLAPLRQQRCPHGKERYFCRECGGGTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRRTRXXXXXXXXXXXXXQLRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLALTTVCAHGRKHQCKACGGKPIKNAAAEQQSVDATVAAVAEVGDGPGLAAGDAMIITADAL
Sbjct:    1 MCEILERGDEERAPLAPLRQQRCPHGKERYFCRECGGGTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRRTRXXXXXXXXXXXXXQLRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLALTTVCAHGRKHQCKACGGKPIKNAAAEQQSVDATVAAVAEVGDGPGLAAGDAMIITADAL 243
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BLAST of jgi.p|Trimin1|177348 vs. uniprot
Match: A0A836CKQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.650e-23
Identity = 188/245 (76.73%), Postives = 192/245 (78.37%), Query Frame = 1 
Query:    4 CEILERGDEER--APLAPLRQQRCPHGKER-YFCRECGGGTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRRTRXXXXXXXXXXXXXQLRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLALTTVCAHGRKHQCKACGGKPIKNAAAEQQSVDATVAAVAEVGDGPGLAAGDAMIITADAL 729
             E LER DEER  +PLAPLR Q CPHGK+R YFCRECGGG F       XXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXX    XXXX                  X     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN AL   C HGR+HQCKACGGKPIKNAAA Q+SVDATVAAVAEVGDGPGLAAGDAMI TADAL
Sbjct:   91 AETLEREDEERPRSPLAPLRHQPCPHGKQRSYFCRECGGGAFCTHGRNRXXXXXXXXXXXXXXXXXXXXXKEEXXXXXXXXXXXXXXXXXXXSGGAXXXX------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPALMMTCTHGRRHQCKACGGKPIKNAAAGQRSVDATVAAVAEVGDGPGLAAGDAMITTADAL 317
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177348 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z7A3_9STRA1.590e-52100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKQ3_9STRA2.650e-2376.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_150contigContig_150:172235..172966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177348|e_gw1.150.16.1
Hectar predicted targeting categoryother localisation
TranscriptId177670
TrackFilteredModels1
ProteinId177348
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177348gene_16216Tribonema minus UTEX_B_3156 geneContig_150 172235..172966 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16216_1exon_16216_1Tribonema minus UTEX_B_3156 exonContig_150 172235..172966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16216CDS_16216Tribonema minus UTEX_B_3156 CDSContig_150 172235..172966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177348Trimin1|177348|e_gw1.150.16.1Tribonema minus UTEX_B_3156 polypeptideContig_150 172235..172966 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16216 ID=mRNA_16216|Name=jgi.p|Trimin1|177348|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_150:172235..172966+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGAAATCTTGGAGCGCGGGGACGAAGAACGGGCTCCACTGGCGCC
GCTGCGACAACAACGCTGCCCACACGGGAAGGAGCGCTACTTCTGCAGGG
AGTGCGGCGGCGGCACCTTTTGCACGCATGGGCGCAAACGCTACTACTGC
AGGGAGTGCGGCGGCGGCGCCTTTTGTACGCATGGGCTTAATCGCTACAC
CTGCAAGGAGTGCGGCGGCAAAGGTACCTGTGGGCACGGACGGCTGCGTA
CAGCCTGTAAGGAATGTGGCGGCGGCTCCGTCTGCAAACACGGGCGGACG
CGGCGCACAAGGTGTAAGGAATGTGGCGGCGGCTCCGTCTGCAAACACGG
GCAGCTGCGTTCAAAGTGCTTGGACTGCGGCGGCAGCGCTATGTGCTCAC
ACGGGCGGCAGCGCTACACCTGCAAGGAGTGCGGCAGCAAAGGCATCTGT
GGGCACGGGCGGCAGCGTGCACAGTGCAAGGAATGCGGCGGGGGCGGCAT
CTGCGAGCATGTGCAGGTTCGGCGGGAGTGTCGGACTTGCAATCTGGCGC
TGACGACGGTGTGTGCGCACGGGCGAAAGCACCAGTGCAAGGCATGCGGC
GGCAAGCCCATCAAGAACGCAGCCGCTGAGCAGCAGAGCGTCGACGCCAC
AGTAGCTGCAGTGGCAGAGGTAGGTGACGGCCCGGGACTAGCAGCTGGAG
ATGCCATGATCATAACGGCCGATGCCCTTTAA
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protein sequence of jgi.p|Trimin1|177348

>Trimin1|177348|e_gw1.150.16.1 ID=Trimin1|177348|e_gw1.150.16.1|Name=jgi.p|Trimin1|177348|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=244bp
MCEILERGDEERAPLAPLRQQRCPHGKERYFCRECGGGTFCTHGRKRYYC
RECGGGAFCTHGLNRYTCKECGGKGTCGHGRLRTACKECGGGSVCKHGRT
RRTRCKECGGGSVCKHGQLRSKCLDCGGSAMCSHGRQRYTCKECGSKGIC
GHGRQRAQCKECGGGGICEHVQVRRECRTCNLALTTVCAHGRKHQCKACG
GKPIKNAAAEQQSVDATVAAVAEVGDGPGLAAGDAMIITADAL*
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mRNA from alignment at Contig_150:172235..172966+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16216 ID=mRNA_16216|Name=jgi.p|Trimin1|177348|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_150:172235..172966+ (Tribonema minus UTEX_B_3156 )
ATGTGCGAAATCTTGGAGCGCGGGGACGAAGAACGGGCTCCACTGGCGCC
GCTGCGACAACAACGCTGCCCACACGGGAAGGAGCGCTACTTCTGCAGGG
AGTGCGGCGGCGGCACCTTTTGCACGCATGGGCGCAAACGCTACTACTGC
AGGGAGTGCGGCGGCGGCGCCTTTTGTACGCATGGGCTTAATCGCTACAC
CTGCAAGGAGTGCGGCGGCAAAGGTACCTGTGGGCACGGACGGCTGCGTA
CAGCCTGTAAGGAATGTGGCGGCGGCTCCGTCTGCAAACACGGGCGGACG
CGGCGCACAAGGTGTAAGGAATGTGGCGGCGGCTCCGTCTGCAAACACGG
GCAGCTGCGTTCAAAGTGCTTGGACTGCGGCGGCAGCGCTATGTGCTCAC
ACGGGCGGCAGCGCTACACCTGCAAGGAGTGCGGCAGCAAAGGCATCTGT
GGGCACGGGCGGCAGCGTGCACAGTGCAAGGAATGCGGCGGGGGCGGCAT
CTGCGAGCATGTGCAGGTTCGGCGGGAGTGTCGGACTTGCAATCTGGCGC
TGACGACGGTGTGTGCGCACGGGCGAAAGCACCAGTGCAAGGCATGCGGC
GGCAAGCCCATCAAGAACGCAGCCGCTGAGCAGCAGAGCGTCGACGCCAC
AGTAGCTGCAGTGGCAGAGGTAGGTGACGGCCCGGGACTAGCAGCTGGAG
ATGCCATGATCATAACGGCCGATGCCCTTTAA
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Coding sequence (CDS) from alignment at Contig_150:172235..172966+

>mRNA_16216 ID=mRNA_16216|Name=jgi.p|Trimin1|177348|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=732bp|location=Sequence derived from alignment at Contig_150:172235..172966+ (Tribonema minus UTEX_B_3156 )
ATGTGCGAAATCTTGGAGCGCGGGGACGAAGAACGGGCTCCACTGGCGCC
GCTGCGACAACAACGCTGCCCACACGGGAAGGAGCGCTACTTCTGCAGGG
AGTGCGGCGGCGGCACCTTTTGCACGCATGGGCGCAAACGCTACTACTGC
AGGGAGTGCGGCGGCGGCGCCTTTTGTACGCATGGGCTTAATCGCTACAC
CTGCAAGGAGTGCGGCGGCAAAGGTACCTGTGGGCACGGACGGCTGCGTA
CAGCCTGTAAGGAATGTGGCGGCGGCTCCGTCTGCAAACACGGGCGGACG
CGGCGCACAAGGTGTAAGGAATGTGGCGGCGGCTCCGTCTGCAAACACGG
GCAGCTGCGTTCAAAGTGCTTGGACTGCGGCGGCAGCGCTATGTGCTCAC
ACGGGCGGCAGCGCTACACCTGCAAGGAGTGCGGCAGCAAAGGCATCTGT
GGGCACGGGCGGCAGCGTGCACAGTGCAAGGAATGCGGCGGGGGCGGCAT
CTGCGAGCATGTGCAGGTTCGGCGGGAGTGTCGGACTTGCAATCTGGCGC
TGACGACGGTGTGTGCGCACGGGCGAAAGCACCAGTGCAAGGCATGCGGC
GGCAAGCCCATCAAGAACGCAGCCGCTGAGCAGCAGAGCGTCGACGCCAC
AGTAGCTGCAGTGGCAGAGGTAGGTGACGGCCCGGGACTAGCAGCTGGAG
ATGCCATGATCATAACGGCCGATGCCCTTTAA
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